Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h14
         (336 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81487-4|CAB03998.2|  420|Caenorhabditis elegans Hypothetical pr...    32   0.12 
Z50872-2|CAA90755.1|  273|Caenorhabditis elegans Hypothetical pr...    29   0.83 
AF098992-3|AAC67458.1|  323|Caenorhabditis elegans Hypothetical ...    28   1.4  
U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical pr...    27   2.5  
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.        27   3.3  
AL110500-13|CAB54495.1|  791|Caenorhabditis elegans Hypothetical...    27   3.3  
AC025726-18|AAK73910.1|  996|Caenorhabditis elegans Hypothetical...    27   3.3  
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical...    27   3.3  
AC006674-13|AAF39942.1|  281|Caenorhabditis elegans Hypothetical...    27   3.3  
Z81041-9|CAJ55253.1|  824|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z81041-8|CAB02784.1|  829|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z98866-25|CAL22710.1|  325|Caenorhabditis elegans Hypothetical p...    26   5.8  
U40958-2|ABQ13074.1|  150|Caenorhabditis elegans Hypothetical pr...    26   5.8  
Z73102-3|CAA97409.1|  337|Caenorhabditis elegans Hypothetical pr...    26   7.7  
Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical pr...    26   7.7  
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas...    26   7.7  
AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.      26   7.7  

>Z81487-4|CAB03998.2|  420|Caenorhabditis elegans Hypothetical
           protein C54E10.5 protein.
          Length = 420

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 274 HVSFKALFAWWKVN-RNESCWLDVSQDFNR 188
           HV F  +F WW+V  R+ + WL  S +F R
Sbjct: 196 HVKFYKMFQWWEVQMRDTATWLMHSDEFRR 225


>Z50872-2|CAA90755.1|  273|Caenorhabditis elegans Hypothetical
           protein C05D12.4 protein.
          Length = 273

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +1

Query: 43  EYNNETINNIHDSIDMYRCKRETYSSEKHR 132
           E NNE I N  +SID  R  R T +SE+H+
Sbjct: 123 EENNEVIKNQKESIDKMRISR-TETSEEHK 151


>AF098992-3|AAC67458.1|  323|Caenorhabditis elegans Hypothetical
           protein F53C3.7 protein.
          Length = 323

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 131 VHSTGLDEFDSPIFEVDEIPIEILR--NIKPTRFVPINFPPCEEGLERDVT 277
           V   G+   D+ I E+DE  IEI+   N+ P   +     P  +   +DVT
Sbjct: 154 VEQPGISNGDAEIQEIDEDDIEIIEDPNVAPEIIIEAELTPQRQVNRKDVT 204


>U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical
           protein C01G5.4 protein.
          Length = 1079

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 119 PRSIVHSTGLDEFDSPIFEVDEIPIE 196
           P  +  ST LDE +S I E+D+I +E
Sbjct: 214 PNDLKASTELDELESKILELDQIRME 239


>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
          Length = 2553

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
 Frame = -3

Query: 235 NRNESCWLDVSQDFNRYLVYFED-----RRIKLIKSRGMHDA 125
           N ++S W+D  + F  YLV  +D     R+I+L+K R +  A
Sbjct: 56  NPSKSLWMDNGRTFEHYLVRNKDEIEYKRKIRLLKVRMLDGA 97


>AL110500-13|CAB54495.1|  791|Caenorhabditis elegans Hypothetical
           protein Y87G2A.12 protein.
          Length = 791

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +1

Query: 1   DQMIRRVYTRRI*SEYNNETINNIHDSIDMYRCKRETYSSEKH 129
           D  I  V T+ I +  NNE  +   D+++ Y   R ++SSEKH
Sbjct: 603 DDFIETVETKSI-TRINNEGFSP--DAMEKYGQSRSSFSSEKH 642


>AC025726-18|AAK73910.1|  996|Caenorhabditis elegans Hypothetical
           protein Y71G12B.11b protein.
          Length = 996

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
 Frame = -3

Query: 235 NRNESCWLDVSQDFNRYLVYFED-----RRIKLIKSRGMHDA 125
           N ++S W+D  + F  YLV  +D     R+I+L+K R +  A
Sbjct: 56  NPSKSLWMDNGRTFEHYLVRNKDEIEYKRKIRLLKVRMLDGA 97


>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
           protein Y71G12B.11a protein.
          Length = 2553

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
 Frame = -3

Query: 235 NRNESCWLDVSQDFNRYLVYFED-----RRIKLIKSRGMHDA 125
           N ++S W+D  + F  YLV  +D     R+I+L+K R +  A
Sbjct: 56  NPSKSLWMDNGRTFEHYLVRNKDEIEYKRKIRLLKVRMLDGA 97


>AC006674-13|AAF39942.1|  281|Caenorhabditis elegans Hypothetical
           protein K12H6.7 protein.
          Length = 281

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 303 QYHTSLHVPVTSLSRPSSHGGKLIGTNL 220
           Q+H ++H+ +TSL RP+ +    + TN+
Sbjct: 58  QFHEAIHLCITSLYRPTPYNKYELTTNV 85


>Z81041-9|CAJ55253.1|  824|Caenorhabditis elegans Hypothetical
           protein C27A7.1b protein.
          Length = 824

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 46  YNNETINNIHDSIDMYRCKRET 111
           Y N+T  +++D +D +RCK +T
Sbjct: 417 YINDTTISVNDVVDKFRCKIDT 438


>Z81041-8|CAB02784.1|  829|Caenorhabditis elegans Hypothetical
           protein C27A7.1a protein.
          Length = 829

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 46  YNNETINNIHDSIDMYRCKRET 111
           Y N+T  +++D +D +RCK +T
Sbjct: 422 YINDTTISVNDVVDKFRCKIDT 443


>Z98866-25|CAL22710.1|  325|Caenorhabditis elegans Hypothetical
           protein Y49E10.28 protein.
          Length = 325

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 55  ETINNIHDSIDMYRCKRETYSSEKHRAFHGT 147
           E +N+I D++D  RC R +Y+S+K +    T
Sbjct: 140 EYLNDIVDNMD--RCVRSSYASDKQKVIKET 168


>U40958-2|ABQ13074.1|  150|Caenorhabditis elegans Hypothetical
           protein F09F9.1 protein.
          Length = 150

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 53  MKLLIIFTIVLTCIVVS 103
           MKLLI++ I L C+++S
Sbjct: 83  MKLLILYVICLACLIIS 99


>Z73102-3|CAA97409.1|  337|Caenorhabditis elegans Hypothetical
           protein B0035.2 protein.
          Length = 337

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
 Frame = +2

Query: 11  YEEFIRDASKANTIMKLLIIFTIVLTCIV--VSGKHIHPRSIVHSTGLDEFDSPIFE--V 178
           Y ++ R  +     ++++I+ TI++  +   +S KH    +I ++TG+ +F +   +  +
Sbjct: 115 YYQYYRLRAAPKVDLRIVIVGTILIISLFQFLSAKHKFSEAIEYATGVGKFRNMAIKDGI 174

Query: 179 DEIPIEILRNIK 214
           D+  +E+ RN K
Sbjct: 175 DKGLLEMDRNGK 186


>Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical
           protein F22B5.7 protein.
          Length = 1415

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 170 RSENQTHQVPWNARCFSDEYVSRLQ 96
           + E Q   V WN +  +DE++S+LQ
Sbjct: 617 KEEKQLKLVKWNFQAPTDEHISQLQ 641


>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 1 protein.
          Length = 2500

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 146 LDEFDSPIFEVDEIPIEILRNIKPTRFVPINFP 244
           + EFDS  F +    I +  +I P  F P NFP
Sbjct: 447 IKEFDSEEFAICRQTIIMFADIFPIMFQPQNFP 479


>AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.
          Length = 1415

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 170 RSENQTHQVPWNARCFSDEYVSRLQ 96
           + E Q   V WN +  +DE++S+LQ
Sbjct: 617 KEEKQLKLVKWNFQAPTDEHISQLQ 641


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,860,882
Number of Sequences: 27780
Number of extensions: 129180
Number of successful extensions: 423
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)