Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10h14
(336 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g53220.1 68418.m06616 expressed protein ; expression support... 29 1.0
At1g72550.1 68414.m08389 tRNA synthetase beta subunit family pro... 28 1.8
At1g60800.1 68414.m06844 leucine-rich repeat family protein / pr... 28 1.8
At4g19660.1 68417.m02888 ankyrin repeat family protein / BTB/POZ... 27 2.4
At3g03860.1 68416.m00398 expressed protein 27 2.4
At3g01120.1 68416.m00016 cystathionine gamma-synthase, chloropla... 27 3.1
At4g11670.1 68417.m01865 expressed protein contains Pfam PF05664... 27 4.1
At5g58310.1 68418.m07299 hydrolase, alpha/beta fold family prote... 26 7.2
At5g54300.1 68418.m06763 expressed protein contains similarity t... 26 7.2
At4g13090.1 68417.m02040 xyloglucan:xyloglucosyl transferase, pu... 26 7.2
At3g49440.1 68416.m05404 F-box family protein-related contains w... 25 9.5
At1g12370.2 68414.m01430 type II CPD photolyase PHR1 (PHR1) near... 25 9.5
At1g12370.1 68414.m01429 type II CPD photolyase PHR1 (PHR1) near... 25 9.5
>At5g53220.1 68418.m06616 expressed protein ; expression supported
by MPSS
Length = 441
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 149 DEFDSPIFEVDEIPIEILRNIKPT 220
D+ D+ + D IPI IL+N+KPT
Sbjct: 178 DDDDADDDDEDNIPISILKNLKPT 201
>At1g72550.1 68414.m08389 tRNA synthetase beta subunit family
protein contains Pfam profiles: PF03484
phenylalanine-tRNA synthetase, B5 domain, PF03483 B3/4
domain; an isoform contains a non-consensus TG acceptor
splice site at a terminal exon.
Length = 598
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 92 IVVSGKHIHPRSIVHSTGLDEFDSP 166
I+V GKHI IVH L+ FD P
Sbjct: 560 IIVRGKHIGNFGIVHPEVLNNFDIP 584
>At1g60800.1 68414.m06844 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 632
Score = 27.9 bits (59), Expect = 1.8
Identities = 7/22 (31%), Positives = 15/22 (68%)
Frame = -3
Query: 256 LFAWWKVNRNESCWLDVSQDFN 191
+F WW+ RN+ + DV++ ++
Sbjct: 257 MFLWWRYRRNKQIFFDVNEQYD 278
>At4g19660.1 68417.m02888 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 601
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 182 EIPIEILRNIKPTRFVPINFPPCEE-GLER 268
E+P+E+L IK R +N P E+ +ER
Sbjct: 224 ELPLEVLEKIKQLRVKSVNIPEVEDKSIER 253
>At3g03860.1 68416.m00398 expressed protein
Length = 300
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Frame = -3
Query: 262 KALFAWWKVNRNESCWLDVSQDFNRYLVYFEDRR----IKLIKSRGMHDASR 119
+AL+A + N N + ++SQ FNR + + RR + L+K+R H+ ++
Sbjct: 227 RALWASYVANLNLGRFGEISQLFNRGIHMVDVRRLWLKLSLVKTRNFHERAK 278
>At3g01120.1 68416.m00016 cystathionine gamma-synthase, chloroplast
/ O-succinylhomoserine (Thiol)-lyase (CGS) identical to
SP|P55217 Cystathionine gamma-synthase, chloroplast
precursor (EC 4.2.99.9) (CGS) (O-succinylhomoserine
(Thiol)-lyase) {Arabidopsis thaliana}
Length = 563
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/55 (23%), Positives = 22/55 (40%)
Frame = -3
Query: 331 FLDCLNFKCSVPHFPACSGHVSFKALFAWWKVNRNESCWLDVSQDFNRYLVYFED 167
F+D L P F C V A+ ++W + + E + + R+ ED
Sbjct: 494 FVDSLKIPYIAPSFGGCESIVDQPAIMSYWDLPQEERLKYGIKDNLVRFSFGVED 548
>At4g11670.1 68417.m01865 expressed protein contains Pfam PF05664:
Protein of unknown function (DUF810)
Length = 985
Score = 26.6 bits (56), Expect = 4.1
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +2
Query: 200 LRNIKPTRFVPINFPPCEEGLERD 271
++ +KP + +P+ PP GL D
Sbjct: 146 IKPVKPIKIIPLGLPPLRTGLSDD 169
>At5g58310.1 68418.m07299 hydrolase, alpha/beta fold family protein
low similarity to SP|Q40708 PIR7A protein {Oryza
sativa}, polyneuridine aldehyde esterase [Rauvolfia
serpentina] GI:6651393, ethylene-induced esterase
[Citrus sinensis] GI:14279437; contains Pfam profile
PF00561: hydrolase, alpha/beta fold family
Length = 263
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 86 TCIVVSGKHIHPRSIVHSTGLDEFDSPIF 172
TCI + G I+P + LD++D P++
Sbjct: 34 TCIDLKGAGINPTDPNTVSSLDDYDEPLY 62
>At5g54300.1 68418.m06763 expressed protein contains similarity to
cotton fiber expressed protein 1 [Gossypium hirsutum]
gi|3264828|gb|AAC33276
Length = 326
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +2
Query: 59 LLIIFTIVLTCIVVSGKHIHPRSIVHSTGLDEFDSPI 169
L ++ ++ CI+ + K H S V + + E +PI
Sbjct: 59 LYLVINSIIVCIIATSKLTHKSSSVDDSEISEVVTPI 95
>At4g13090.1 68417.m02040 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
endoxyloglucan transferase EXGT-A1 GI:5533309 from
[Arabidopsis thaliana]
Length = 292
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 167 IFEVDEIPIEILRNIKPTRFVPINFP 244
+F VD++PI + +NIK + +N+P
Sbjct: 161 VFYVDKVPIRVFKNIKKS---GVNYP 183
>At3g49440.1 68416.m05404 F-box family protein-related contains weak
hit to TIGRFAM TIGR01640 : F-box protein interaction
domain
Length = 200
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 5/23 (21%)
Frame = -3
Query: 307 CSVPHFPAC-----SGHVSFKAL 254
CS+PH P C +GH+ +KA+
Sbjct: 12 CSIPHTPKCVGICINGHLYYKAM 34
>At1g12370.2 68414.m01430 type II CPD photolyase PHR1 (PHR1) nearly
identical to type II CPD photolyase PHR1 [Arabidopsis
thaliana] GI:2984707; similar to class II DNA photolyase
(GI:5081541) [Chlamydomonas reinhardtii]; supporting
cDNA gi|2984706|gb|AF053365.1|AF053365
Length = 496
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 216 QQDSFRLTFHHAKRALKET*PEHAGKCGTEHL 311
Q DS ++ F + KET P +CG HL
Sbjct: 91 QIDSLQIPFFLLQGDAKETIPNFLTECGASHL 122
>At1g12370.1 68414.m01429 type II CPD photolyase PHR1 (PHR1) nearly
identical to type II CPD photolyase PHR1 [Arabidopsis
thaliana] GI:2984707; similar to class II DNA photolyase
(GI:5081541) [Chlamydomonas reinhardtii]; supporting
cDNA gi|2984706|gb|AF053365.1|AF053365
Length = 490
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 216 QQDSFRLTFHHAKRALKET*PEHAGKCGTEHL 311
Q DS ++ F + KET P +CG HL
Sbjct: 91 QIDSLQIPFFLLQGDAKETIPNFLTECGASHL 122
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,385,917
Number of Sequences: 28952
Number of extensions: 118560
Number of successful extensions: 359
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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