Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h13
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0391 - 20287755-20288084,20288174-20288414,20288519-202888...    28   5.0  

>06_03_0391 -
           20287755-20288084,20288174-20288414,20288519-20288844,
           20288954-20289097,20289260-20289380,20289645-20289733,
           20289821-20289891,20290165-20290309,20290390-20290479,
           20290991-20291239
          Length = 601

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
 Frame = +2

Query: 404 SVVWKNIEMASGPNSPVQTEQDIEDIFGDSLKTWDHFTDDAKK----NTFHDAISETQRE 571
           SVV K + M++ P+ PVQ E D + +       W+     A+K       H    E   E
Sbjct: 109 SVVTKLLLMSNFPSLPVQNESDSDSV---KFSLWEEPYKQARKWKPCAAKHSLPDEVPEE 165

Query: 572 NNEDF 586
           NN  F
Sbjct: 166 NNNGF 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,651,732
Number of Sequences: 37544
Number of extensions: 235968
Number of successful extensions: 550
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)