Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h13
         (604 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118774-1|AAM50634.1|  189|Drosophila melanogaster GH11730p pro...    29   6.4  
AE014296-3679|AAF51834.1|  189|Drosophila melanogaster CG11404-P...    29   6.4  
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ...    28   8.5  

>AY118774-1|AAM50634.1|  189|Drosophila melanogaster GH11730p
           protein.
          Length = 189

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/50 (24%), Positives = 29/50 (58%)
 Frame = +2

Query: 359 VIMKLKKEVDINHGDSVVWKNIEMASGPNSPVQTEQDIEDIFGDSLKTWD 508
           + M++ + ++++   + +W+NI +     +P+Q E +    FG+S+  WD
Sbjct: 19  ISMEINRIINVSTAQTSLWQNIPIIGQMFAPLQPETNYGVEFGESM--WD 66


>AE014296-3679|AAF51834.1|  189|Drosophila melanogaster CG11404-PA
           protein.
          Length = 189

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/50 (24%), Positives = 29/50 (58%)
 Frame = +2

Query: 359 VIMKLKKEVDINHGDSVVWKNIEMASGPNSPVQTEQDIEDIFGDSLKTWD 508
           + M++ + ++++   + +W+NI +     +P+Q E +    FG+S+  WD
Sbjct: 19  ISMEINRIINVSTAQTSLWQNIPIIGQMFAPLQPETNYGVEFGESM--WD 66


>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
           protein.
          Length = 1092

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = +3

Query: 483 SVTP*RRGIISLTMQRKIPSTTLSVKLKGKTMR 581
           SV   + G +  T++  +P+ +++VK+KG+T++
Sbjct: 772 SVNAAKTGHVIFTLKNDLPTNSMNVKIKGQTIK 804


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,704,593
Number of Sequences: 53049
Number of extensions: 405757
Number of successful extensions: 961
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2462276481
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)