Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10h12
(661 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.) 164 7e-41
SB_14302| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_42971| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_1925| Best HMM Match : Tctex-1 (HMM E-Value=8.7e-12) 41 0.001
SB_22884| Best HMM Match : Tctex-1 (HMM E-Value=9.4e-26) 40 0.001
SB_58523| Best HMM Match : Tctex-1 (HMM E-Value=1.8e-11) 39 0.003
SB_4931| Best HMM Match : Tctex-1 (HMM E-Value=1.7e-09) 39 0.004
SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19) 38 0.010
SB_44340| Best HMM Match : Tctex-1 (HMM E-Value=5.6e-05) 36 0.022
SB_36748| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.022
SB_14303| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.022
SB_44342| Best HMM Match : Tctex-1 (HMM E-Value=1.7e-05) 36 0.039
SB_59030| Best HMM Match : Tctex-1 (HMM E-Value=8.2e-12) 34 0.089
SB_12931| Best HMM Match : Tctex-1 (HMM E-Value=0.00045) 33 0.16
SB_25366| Best HMM Match : Tctex-1 (HMM E-Value=2.6e-08) 31 0.83
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0) 29 3.4
SB_9151| Best HMM Match : WAP (HMM E-Value=0.045) 29 4.4
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 794
Score = 164 bits (398), Expect = 7e-41
Identities = 70/95 (73%), Positives = 81/95 (85%)
Frame = +2
Query: 149 EENQFIVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQLTKLQKPYKYVVTC 328
EE F+VD+VS IIKE IE +IGG AYQHN VNQWTS VVE CL QLTKL KP+KY+VTC
Sbjct: 8 EETSFVVDEVSNIIKEGIEGAIGGNAYQHNKVNQWTSNVVEQCLNQLTKLGKPFKYIVTC 67
Query: 329 TILQKNGAGLHTSSSCYWDNTTDGSCTVRWENKTM 433
I+QKNGAGLHTSSSCYWDNTTDGSCT++ +K++
Sbjct: 68 VIMQKNGAGLHTSSSCYWDNTTDGSCTIKQPDKSL 102
>SB_14302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 50.8 bits (116), Expect = 1e-06
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Frame = +2
Query: 164 IVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQLTKLQ-KPYKYVVTCTILQ 340
I++++SK+I ++ + G +Y+ ++ + E+ ++ L YK VV +I
Sbjct: 26 IIENISKVI---LQERLEGMSYEATECSKLAREMSETIRNEVKALSWDRYKIVVMVSIGS 82
Query: 341 KNGAGLHTSSSCYWDNTTDGSCTVRWENKTMYCIVSV 451
GLH SS C W TDGS T + N +++ + +V
Sbjct: 83 LKDQGLHISSRCLWYPNTDGSATAVYRNTSLFAVATV 119
>SB_42971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +1
Query: 202 RKFNWRHCLSTQQCQPMDFSSC*VMSGAVD*VTKTIQICSDLHNTAEEWCRTAYKFFLLL 381
R++ W+ C+STQQ QPMD MS D KT+Q+ L AE+ R+ Y +LL
Sbjct: 133 RRYRWK-CVSTQQSQPMDLKCRRAMSKPTDQAGKTVQVHRYLRYHAEKRSRSTYFELVLL 191
Query: 382 G 384
G
Sbjct: 192 G 192
>SB_1925| Best HMM Match : Tctex-1 (HMM E-Value=8.7e-12)
Length = 349
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Frame = +2
Query: 143 LDEENQFIVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQLTKLQKP-YKYV 319
L+ QF V +V +I++E E I Y + + ++ LQ P YK +
Sbjct: 168 LEPGKQFEVTEVQRIMREVFEEEIKDLEYDAEKCAPLCKRLSDVVKARVKGLQYPRYKII 227
Query: 320 VTCTILQKNGAGLHTSSSCYWDNTTDGSCTVRWE 421
+ QK G + +S C WD D +E
Sbjct: 228 ALVYVGQKEGQDVRITSRCVWDTRFDNCAQYAYE 261
>SB_22884| Best HMM Match : Tctex-1 (HMM E-Value=9.4e-26)
Length = 439
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Frame = +2
Query: 158 QFIVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQLTKLQ-KPYKYVVTCTI 334
+F ++ I+KE + ++ Y N Q T + E+ ++ +L + YK + I
Sbjct: 73 KFPEGNIRNIMKEVLIENLADVNYDPNTCRQLTKTISETLKNRVKELSVQRYKIICLVHI 132
Query: 335 LQKNGAGLHTSSSCYWDNTTDGSCTVRWENKTMYCIVSV 451
Q + S C WD D T ++N +++ + +V
Sbjct: 133 GQLGKQAMRIGSRCLWDANFDTYTTYEFKNGSLFGVATV 171
>SB_58523| Best HMM Match : Tctex-1 (HMM E-Value=1.8e-11)
Length = 541
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Frame = +2
Query: 143 LDEENQFIVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQLTKLQKP-YKYV 319
+D + F V V +II+ + ++ Y + ++ S ++ L+ P YK V
Sbjct: 432 IDPDVSFPVAKVEEIIRGVLSETLSSVEYNVTKAKEKCKSISNSIKERVKALELPRYKLV 491
Query: 320 VTCTILQKNGAGLHTSSSCYWDNTTDGSCTVRWENKTMYCIVSV 451
V + G + +S C W + D T + N +++ +V
Sbjct: 492 VLAHVGGNQGQEIKVTSRCVWSHEFDNYATASYCNSSVFAQATV 535
>SB_4931| Best HMM Match : Tctex-1 (HMM E-Value=1.7e-09)
Length = 259
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = +2
Query: 176 VSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQLTKLQKP-YKYVVTCTILQKNGA 352
+ +IK+ +E + Y+ N + ++ +L+ P YKYV + + N
Sbjct: 161 IEPLIKDTLEEHLDNQTYEPNFCRLAAIKITNQLKERMKRLRYPRYKYVCHAMLGEINNQ 220
Query: 353 GLHTSSSCYWDNTTDGSCTVRWENKTMYCI 442
+ S C WD D + N ++Y I
Sbjct: 221 DVRAVSRCAWDTCVDSFAQYEYRNCSLYGI 250
>SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)
Length = 851
Score = 37.5 bits (83), Expect = 0.010
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +2
Query: 176 VSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQLTKLQ-KPYKYVVTCTILQKNGA 352
V +I+K+A+ ++ +Y+ N+ + + L ++ +L + YK V +I KN
Sbjct: 754 VRQIVKDALV-TLDSHSYEPNDSALLAKLMSKRILDEVKQLNVERYKLVCLVSIGSKNRQ 812
Query: 353 GLHTSSSCYWDNTTDGSCTVRWENKTMYCIVSV 451
G+ +S C W+ D + + T Y I +V
Sbjct: 813 GMRIASRCLWNTEYDTCISETMDKHTFYAIATV 845
>SB_44340| Best HMM Match : Tctex-1 (HMM E-Value=5.6e-05)
Length = 369
Score = 36.3 bits (80), Expect = 0.022
Identities = 22/110 (20%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Frame = +2
Query: 110 NKIMEVKECNDLDEENQFIVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQL 289
N ++ + ND E+N + + +II E +++ + Y + S + + G++
Sbjct: 71 NNNPDIADLNDF-EDNFESQELLRQIISEELDSVLRDCDYDSERSVKQGSVISQRVEGRV 129
Query: 290 TKLQKPYKYVVTCTILQK-NGAGLHTSSSCYWDNTTDGSCTVRWENKTMY 436
K +V+ + + G+ +S C WD+ +D T + NK+++
Sbjct: 130 KSAVKSGTKIVSVVYIGEIRDQGIEITSQCLWDSKSDNFATASFRNKSLF 179
>SB_36748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 329
Score = 36.3 bits (80), Expect = 0.022
Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +2
Query: 152 ENQFIVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQLTKLQKP-YKYVVTC 328
+ + D + +I++ + + T Y+ N + + + L L L P YK+V +
Sbjct: 224 DKKIACDKIRDVIRKHLR-FLETTEYEVNRCREISKLLSNRILKDLKLLGFPRYKFVSSV 282
Query: 329 TILQKNGAGLHTSSSCYWDNTTDGSCTVRWENKTMYCIVSV 451
I Q G + +S C WD +D + +E+ +++ + +V
Sbjct: 283 CIGQMLGQSVRIASRCVWDTESDNFVSESYESLSLFAVGTV 323
>SB_14303| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 36.3 bits (80), Expect = 0.022
Identities = 19/95 (20%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Frame = +2
Query: 170 DDVSKIIKEAIENSIGG-TAYQHNNVNQWT---SAVVESCLGQLTKLQKPYKYVVTCTIL 337
+++ ++I++ + + + T Y+H + S ++++C+ +L +P K +V I
Sbjct: 72 EEMGRVIRDVLSSYLKQFTEYKHEMFERLCTLLSDLIKTCVTELC--DEPCKVIVNVFIG 129
Query: 338 QKNGAGLHTSSSCYWDNTTDGSCTVRWENKTMYCI 442
G G+ ++ C W D T ++N+T++ +
Sbjct: 130 AIKGQGIDAATQCTWTPDCDKFATASFQNETLFAV 164
>SB_44342| Best HMM Match : Tctex-1 (HMM E-Value=1.7e-05)
Length = 608
Score = 35.5 bits (78), Expect = 0.039
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +2
Query: 158 QFIVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQLTKLQKP-YKYVVTCTI 334
+F D V+KII + +N + Y + + + +L P Y+ V TCTI
Sbjct: 477 KFDRDKVTKIIVDVFKNKLANMHYNAKDCQAMAKELASVIREKCVELHLPGYRLVCTCTI 536
Query: 335 LQKNGAGLHTSSSCYWD 385
++ S C WD
Sbjct: 537 TKRLKPAPAIESGCLWD 553
>SB_59030| Best HMM Match : Tctex-1 (HMM E-Value=8.2e-12)
Length = 178
Score = 34.3 bits (75), Expect = 0.089
Identities = 19/105 (18%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Frame = +2
Query: 143 LDEENQFIVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQLTKL--QKPYKY 316
L +++ F D+ ++ E +++++ Y + + +S ++ L K Y++
Sbjct: 68 LKDKDFFCSHDIQCLMDEILDDTLSSEHYSAESSRVLCLGLADSIKSRVKGLGMAKRYRF 127
Query: 317 VVTCTILQKNGAGLHTSSSCYWDNTTDGSCTVRWENKTMYCIVSV 451
+ +I +G GL +S W+ D T + N +++ + +V
Sbjct: 128 ICHVSIGSCSGQGLLIASKSVWNEKRDSFVTSTFRNASLFAVATV 172
>SB_12931| Best HMM Match : Tctex-1 (HMM E-Value=0.00045)
Length = 247
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Frame = +2
Query: 116 IMEVKECND--LDEENQFIVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQL 289
I+ K ND E F + +I+KE ++ G Y+ + + + + +L
Sbjct: 66 IVNPKPANDNKATEITGFDKKVIFEILKEVLDQGFEGLTYEQRDTARLCHEIARTLKERL 125
Query: 290 TKLQKP-YKYVVTCTILQKNGAGLHTSSSCYWD 385
L P +K V TC ++ + S C WD
Sbjct: 126 ALLHIPEFKLVCTCYATRRAKPCMQIESGCAWD 158
>SB_25366| Best HMM Match : Tctex-1 (HMM E-Value=2.6e-08)
Length = 556
Score = 31.1 bits (67), Expect = 0.83
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Frame = +2
Query: 143 LDEENQFIVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQLTKLQ-KPYKYV 319
++ N+F V II+EA + + +Y+ T+ + E ++ L YK +
Sbjct: 381 MEPSNRFSHKKVKDIIEEAFQEHLNEHSYEAEFCKHMTTKLSELIKQRVKHLGFTRYKLI 440
Query: 320 VTCTILQKNGAGLHTSSSCYW----DNTTDGS 403
I Q G+ S C W DN +GS
Sbjct: 441 CIVYIGQVMNQGMRIGSRCLWNTNFDNVVEGS 472
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = +2
Query: 308 YKYVVTCTILQKNGAGLHTSSSCYWDNTTDGSCTVRWENKTMYCIVSV 451
YK V I + N + S C WD D + N T++ + ++
Sbjct: 19 YKIVCLTNIGKVNDQTIRIGSRCCWDQNLDNYAEAVYTNSTLFAVTAI 66
>SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 280
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 389 CYPNNKKNLYAVLHHSSAVL-CRSLHICMVF 300
C+P+ K NLY V+ + AVL C +CM F
Sbjct: 233 CWPSIKGNLYTVIGITGAVLICIIFTMCMAF 263
>SB_9151| Best HMM Match : WAP (HMM E-Value=0.045)
Length = 1865
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 296 LQKPYKYVVTCTILQKNGAGLHTSSSCYWDNTTDGS 403
L +P+ T +L K+ GL T++S W+ TDGS
Sbjct: 500 LNRPFGSSTTMRLLTKD-VGLQTTASQSWNGITDGS 534
>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 388 HY*WLMH-GPLGE*NYVLHCLSLWAWHITWIYYIHLL 495
H WL H L NY+ H + W +H++W+ +++ +
Sbjct: 119 HVIWLFHVSLLCHVNYMYHVI--WLFHVSWLCHVNYM 153
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,312,314
Number of Sequences: 59808
Number of extensions: 380186
Number of successful extensions: 830
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -