Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h12
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica...    35   0.042
At2g37420.1 68415.m04589 kinesin motor protein-related                 29   2.1  
At4g13370.1 68417.m02090 expressed protein                             29   3.6  
At5g17090.1 68418.m02002 expressed protein                             28   4.8  

>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger protein-related
           similar to ATPase [Homo sapiens] GI:531196; contains
           Pfam profiles PF00271: Helicase conserved C-terminal
           domain, PF00176: SNF2 family N-terminal domain, PF00097:
           Zinc finger, C3HC4 type (RING finger)
          Length = 1287

 Score = 35.1 bits (77), Expect = 0.042
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +2

Query: 203 ENSIGGTAYQHNNVNQWTSAVVESCLGQLTKLQKPYKYVVTCTILQKNGAGLHTSSSCYW 382
           E S+   AY     N+W S    S +   T ++K Y Y+   T L    +G   SS+ ++
Sbjct: 360 EFSVRDDAYLSGETNRWWSGASSSAVSYQTDIEKGYSYMAPQTALPSQDSG-KISSNHFY 418

Query: 383 DNTT 394
           D+ T
Sbjct: 419 DSDT 422


>At2g37420.1 68415.m04589 kinesin motor protein-related 
          Length = 1039

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
 Frame = +2

Query: 140  DLDEENQFIVDDVSKIIKEAIENSIGGTAYQHNNVN----------QWTSAVVESCLGQL 289
            D+ +EN+ + D+ +        N +  T   H  VN          + T A+VE+C+ Q+
Sbjct: 889  DMAKENEKVQDEFTSTFSSMDANFVSRTNELHAAVNDSLMQDRENKETTEAIVETCMNQV 948

Query: 290  TKLQKPYKYVVT 325
            T LQ+ +   V+
Sbjct: 949  TLLQENHGQAVS 960


>At4g13370.1 68417.m02090 expressed protein
          Length = 673

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +2

Query: 137 NDLDEENQF--IVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQLTKLQKPY 310
           N L   N+F  I +DV K  K A ENS   ++ Q N ++ W  A + + L ++  L K +
Sbjct: 483 NPLRIINEFLKIYEDVMKYSKIASENSFSLSSDQQNPISLWVEAALATNL-EVVSLVKSH 541

Query: 311 K 313
           +
Sbjct: 542 E 542


>At5g17090.1 68418.m02002 expressed protein
          Length = 230

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 21/82 (25%), Positives = 36/82 (43%)
 Frame = +2

Query: 110 NKIMEVKECNDLDEENQFIVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQL 289
           N  ME +E      EN+  + D    I +AI+N + G AY +    ++ + +  SC+ +L
Sbjct: 101 NAYMEYREVRIQALENRGFLPDPFNFI-DAIQN-LDGPAYDNMTNREYLAGLASSCVKKL 158

Query: 290 TKLQKPYKYVVTCTILQKNGAG 355
             L+      V+       G G
Sbjct: 159 NDLKAKTVEFVSIVRATTTGGG 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,535,239
Number of Sequences: 28952
Number of extensions: 266821
Number of successful extensions: 661
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)