BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov10h11 (535 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical pr... 158 2e-39 AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal pro... 158 2e-39 Z83217-2|CAB05680.2| 319|Caenorhabditis elegans Hypothetical pr... 27 8.5 >Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical protein T05F1.3 protein. Length = 146 Score = 158 bits (384), Expect = 2e-39 Identities = 76/134 (56%), Positives = 97/134 (72%), Gaps = 1/134 (0%) Frame = +1 Query: 40 RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 219 R+ ++KDV+Q + K++A LKK+GKVKVPE DLVK KELAP DPDWFY R A++ Sbjct: 3 RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62 Query: 220 RHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-G 396 RH+Y R P G+ K++GG KR GV P+HF S+G+ RKA+Q LE +K VEK DG G Sbjct: 63 RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKG 121 Query: 397 RILTTQGRRDLDRI 438 RIL+ QGR+DLDRI Sbjct: 122 RILSKQGRKDLDRI 135 >AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal protein S19 protein. Length = 146 Score = 158 bits (384), Expect = 2e-39 Identities = 76/134 (56%), Positives = 97/134 (72%), Gaps = 1/134 (0%) Frame = +1 Query: 40 RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 219 R+ ++KDV+Q + K++A LKK+GKVKVPE DLVK KELAP DPDWFY R A++ Sbjct: 3 RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62 Query: 220 RHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-G 396 RH+Y R P G+ K++GG KR GV P+HF S+G+ RKA+Q LE +K VEK DG G Sbjct: 63 RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKG 121 Query: 397 RILTTQGRRDLDRI 438 RIL+ QGR+DLDRI Sbjct: 122 RILSKQGRKDLDRI 135 >Z83217-2|CAB05680.2| 319|Caenorhabditis elegans Hypothetical protein C10C6.3 protein. Length = 319 Score = 27.1 bits (57), Expect = 8.5 Identities = 20/58 (34%), Positives = 27/58 (46%) Frame = +1 Query: 232 IRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRIL 405 I S + K T ++ G R G P SGS +K + A+K EK +D GR L Sbjct: 141 IESDLKEKPDTNVYTG-SREGYVPPPAKEGSGSGGKKKDMNNVAVKPDEKKKDSGRKL 197 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,848,602 Number of Sequences: 27780 Number of extensions: 239031 Number of successful extensions: 641 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 616 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 637 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1060113800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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