Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h08
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0585 + 20824752-20825954,20826141-20826329,20826533-208266...    33   0.24 
06_03_0267 + 18970578-18972464                                         27   9.0  
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804...    27   9.0  

>12_02_0585 +
           20824752-20825954,20826141-20826329,20826533-20826690,
           20826913-20827009,20827368-20827730,20829225-20829303,
           20830180-20830286
          Length = 731

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 499 NREKAFLFVKNCGGDWIPTSFSAGKEFCCTNGEHPKC 609
           N  +A+L + +CGG W P +++ GK    T  E   C
Sbjct: 623 NNMEAYLCIPSCGGRWTPCAWNGGKFGSATKYEWKPC 659


>06_03_0267 + 18970578-18972464
          Length = 628

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 526 KNCGGDWIPTSFSAGKEFCCTNGEHPKC 609
           K C  +  P S   G EFC  +G   +C
Sbjct: 422 KRCSAEGCPKSVHGGTEFCVAHGGGKRC 449


>01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,
            8048455-8048540,8048698-8048983,8049063-8049205,
            8049308-8049508,8049626-8049754,8050463-8050738,
            8050823-8051098,8051364-8052364,8052452-8052634,
            8052865-8052937,8053205-8053313,8053622-8053785
          Length = 1093

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 483  CXTRCQ*GKGLLVCEKLWRRLDSH*LFC 566
            C TR + G G  +C  +W+ L +H L C
Sbjct: 1037 CHTRARGGGGCHMCVFMWKLLFTHSLLC 1064


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,766,637
Number of Sequences: 37544
Number of extensions: 253990
Number of successful extensions: 603
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)