Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h08
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2672| Best HMM Match : GSHPx (HMM E-Value=4.1e-14)                  29   2.3  
SB_34228| Best HMM Match : RasGAP (HMM E-Value=0.0092)                 28   7.0  
SB_4760| Best HMM Match : EGF (HMM E-Value=8.29989e-42)                28   7.0  
SB_47417| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_2672| Best HMM Match : GSHPx (HMM E-Value=4.1e-14)
          Length = 444

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 324 TASTFFDAHLLGHEHPTLTR 265
           T +T+FD  ++G +HP LTR
Sbjct: 314 TLTTYFDGEIIGRKHPFLTR 333


>SB_34228| Best HMM Match : RasGAP (HMM E-Value=0.0092)
          Length = 633

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 605 LGCSPLVQQNSLPAEKLVGIQSPPQFFTNKK 513
           LG S +     LP +K++GI+ PP+  T KK
Sbjct: 429 LGYSSVQPPGMLPEDKVLGIEKPPKQETIKK 459


>SB_4760| Best HMM Match : EGF (HMM E-Value=8.29989e-42)
          Length = 240

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 218 KRNPPKNSTKSTMMSSRVSVGCSCPSKWASKKVDAVD 328
           ++NP  N  K     S     CSCPS +  +  D +D
Sbjct: 80  QKNPCMNGGKCVETLSGTGYECSCPSGYRGEVCDVID 116


>SB_47417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 199

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 121 KMQSGKGLVILAACLCLVMTEARRKLKR 204
           K+   +G   L ACLCL + +A R++ R
Sbjct: 113 KVYCSQGNTSLGACLCLELADALRRMNR 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,743,933
Number of Sequences: 59808
Number of extensions: 289983
Number of successful extensions: 736
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)