Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h08
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   1.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   1.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   1.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.2  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   4.2  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   7.3  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 587 VQQNSLPAEKLVGIQSPPQFFTNKKAF 507
           ++ N++PA  ++G+ +   FFT    F
Sbjct: 324 LEWNAVPARVMIGVTTMLNFFTTSNGF 350


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 587 VQQNSLPAEKLVGIQSPPQFFTNKKAF 507
           ++ N++PA  ++G+ +   FFT    F
Sbjct: 293 LEWNAVPARVMIGVTTMLNFFTTSNGF 319


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 587 VQQNSLPAEKLVGIQSPPQFFTNKKAF 507
           ++ N++PA  ++G+ +   FFT    F
Sbjct: 344 LEWNAVPARVMIGVTTMLNFFTTSNGF 370


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 587 VQQNSLPAEKLVGIQSPPQFFTNKKAF 507
           ++ N++PA  ++G+ +   FFT    F
Sbjct: 293 LEWNAVPARVMIGVTTMLNFFTTSNGF 319


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 230 PKNSTKSTMMSSRVSVGCSCPSKWASKKV 316
           P  STKST++ + ++  CS  +    KK+
Sbjct: 332 PMTSTKSTIVRNHLNSTCSVTNSPHQKKL 360


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 539 ATGFPLAFLPAK 574
           ATG+PLA++ AK
Sbjct: 140 ATGYPLAYVAAK 151


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 449 YFKITSRHVLIQCLKPPEP 393
           YF+I+ RH+L    K P P
Sbjct: 29  YFRISRRHLLELAEKIPGP 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,930
Number of Sequences: 438
Number of extensions: 2538
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)