Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10h07
(597 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0012 - 24959542-24959684,24960132-24960192,24960995-249611... 166 1e-41
04_04_0520 - 25871932-25872074,25872234-25872294,25873267-258733... 132 2e-31
10_08_1010 + 22230329-22230658,22231033-22231298,22231411-222315... 36 0.019
02_04_0500 + 23500769-23500951,23501200-23501285,23501442-235014... 29 2.8
10_08_0927 - 21614203-21614219,21615347-21615430,21616529-216166... 29 3.7
04_04_0352 + 24619621-24619757,24620102-24620411,24621022-246214... 29 3.7
11_06_0477 + 24057677-24059099,24059556-24060448,24060456-240605... 28 4.9
05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589 27 8.6
03_05_1136 + 30634685-30634919,30635008-30635303,30635398-306357... 27 8.6
>02_05_0012 -
24959542-24959684,24960132-24960192,24960995-24961117,
24961196-24961262,24961510-24961580,24961650-24961747,
24962279-24962355,24963568-24963635,24963754-24963855,
24963945-24963976,24964066-24964112,24964263-24964316,
24964952-24965034
Length = 341
Score = 166 bits (403), Expect = 1e-41
Identities = 77/144 (53%), Positives = 100/144 (69%)
Frame = +1
Query: 166 EGLLVGIGNPLLDISASVDEDLLKKYDLHPDDAIMAEEKHMPLYSELVDKYNAEYIAGGS 345
EG+L+G+GNPLLDISA VD+ L KYD+ ++AI+AEEKH+P+Y EL K N EYIAGG+
Sbjct: 4 EGVLLGMGNPLLDISAVVDDAFLTKYDVKLNNAILAEEKHLPMYDELASKGNVEYIAGGA 63
Query: 346 VQNSLRVAQWILKKPNICTYFGCVGNDEYAKLLKERAIADGVHVQYQVSNEVATGTCAVL 525
QNS+RVAQW+L+ P +Y GC+G D++ + +K+ A A GV Y TGTCAV
Sbjct: 64 TQNSIRVAQWMLQTPGATSYMGCIGKDKFGEEMKKNAQAAGVTAHYYEDEAAPTGTCAVC 123
Query: 526 VTGTHRSLCANLGAAQHFTPXHLQ 597
V G RSL ANL AA + HL+
Sbjct: 124 VVGGERSLVANLSAANCYKSEHLK 147
>04_04_0520 -
25871932-25872074,25872234-25872294,25873267-25873389,
25873465-25873531,25873710-25873780,25873853-25874004,
25874082-25874158,25874323-25874435,25874503-25874598,
25874703-25874734,25874838-25874884,25875015-25875068,
25875212-25875289,25875607-25875698
Length = 401
Score = 132 bits (320), Expect = 2e-31
Identities = 77/183 (42%), Positives = 101/183 (55%), Gaps = 39/183 (21%)
Frame = +1
Query: 166 EGLLVGIGNPLLDISASVDEDLLKK--------------------------YDLHPDDAI 267
EG+L+G+GNPLLDISA VDE L YD+ P +AI
Sbjct: 7 EGVLLGMGNPLLDISAVVDEAFLANSVLENDDIFHLGPLGVWKGGGVEGVIYDIKPGNAI 66
Query: 268 MAEEKHMPLYSELVDKYNAEYIAGGSVQNSLRVAQWILKKPNICTYFGCVGNDEYAKLLK 447
+AEEKH+P+Y+EL K N EYIAGGS QNS+RVAQW+L+ P +Y GC+G D++ + +K
Sbjct: 67 LAEEKHLPMYNELASKVNVEYIAGGSTQNSIRVAQWMLQIPGATSYMGCIGKDKFGEEMK 126
Query: 448 ERAIADGVH-------------VQYQVSNEVATGTCAVLVTGTHRSLCANLGAAQHFTPX 588
+ A G+H Y + TGTCAV + G RSL ANL AA +
Sbjct: 127 KDAQTAGLHHCTYCLDLTIFKQAHYYEDDNAPTGTCAVCIVGGERSLVANLSAANCYRSE 186
Query: 589 HLQ 597
HL+
Sbjct: 187 HLK 189
>10_08_1010 +
22230329-22230658,22231033-22231298,22231411-22231528,
22231842-22232050,22232297-22232750
Length = 458
Score = 36.3 bits (80), Expect = 0.019
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 8/140 (5%)
Frame = +1
Query: 175 LVGIGNPLLDISASVDEDLLKKYDLHPDDAIMAEEKHMPLYSELVDKYNAEYIAGGSVQN 354
++G+G ++D S VD++ L + + + + +D + + AGGS+ N
Sbjct: 103 VLGLGQAMVDFSGMVDDEFLHRLGIQKGTRKVVNHEERGRVLRAMDGCSYKAAAGGSLSN 162
Query: 355 SLRVAQWILKKPNICTY-------FGCVGNDEYAKLLKERAIADGVHVQYQVSNEVATGT 513
SL VA L Y G VG+D + + +H + + TGT
Sbjct: 163 SL-VALSRLGSSRSTNYPELRIAMAGSVGSDPLGSFYRAKLRRANLHFLSKPVKDGTTGT 221
Query: 514 CAVLVT-GTHRSLCANLGAA 570
VL T R++ A G +
Sbjct: 222 VIVLTTPDAQRTMLAYQGTS 241
>02_04_0500 +
23500769-23500951,23501200-23501285,23501442-23501490,
23501560-23501746,23502214-23502371,23502447-23502515,
23502692-23502750,23503140-23503176,23503493-23503564,
23503694-23503841,23504124-23504219,23505042-23505181,
23505304-23505419,23505614-23505659,23505747-23505923
Length = 540
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 220 DEDLLKKYDLHPDDAIMAEEKHMPLYSELVDKYNAE 327
DE +L +YD + DD+ + ++ + P ++ LV + N E
Sbjct: 311 DEVVLGQYDGYKDDSTVPDDSNTPTFASLVLRVNNE 346
>10_08_0927 -
21614203-21614219,21615347-21615430,21616529-21616607,
21616986-21616992,21617081-21617151
Length = 85
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 187 GNPLLDISASVDEDLLKKYDLHPDD-AIMAEEKHMPLYSELVDKYNAEY 330
G ++D S+ + + L K DL D +++E KHM L E V ++EY
Sbjct: 22 GGRVMDASSGISDLGLWKMDLSDDVYQLLSEVKHMNLMMETVATAHSEY 70
>04_04_0352 +
24619621-24619757,24620102-24620411,24621022-24621429,
24621773-24622357
Length = 479
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 205 ISASVDEDLLKKYDLHPDDAIMAEEKHMPLYSELVDKYNAE 327
I+ S EDL ++ ++ + E K PLY + +DK+ +E
Sbjct: 387 ITYSESEDLSDIFETDSEEEQVQESKEQPLYLDKLDKFPSE 427
>11_06_0477 +
24057677-24059099,24059556-24060448,24060456-24060578,
24060995-24061036
Length = 826
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = +1
Query: 175 LVGIGNPLLDISASVDEDLLKKYDL-----HPDDAIMAEEKHMPLYSELVDKYN 321
+VG+GNP DI D++ + YD+ DD + + ++ + +LV++ N
Sbjct: 136 IVGLGNPTTDI-GHADDEFPQDYDIMYQNFEDDDVVGFDNEYNEIVEKLVEQEN 188
>05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589
Length = 503
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 454 AIADGVHVQYQVSNEVATGTCAVLVTGTHRSLCANLGA 567
A A G HV ++ +A+ TCA LVT T + + GA
Sbjct: 131 AAATGSHVAAAITAAIASSTCA-LVTATTSVITSTTGA 167
>03_05_1136 +
30634685-30634919,30635008-30635303,30635398-30635790,
30635856-30636348,30636422-30636918
Length = 637
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 163 QEGLLVGIGNPLLD-ISASVDEDLLKKYDLHPDDAIMAE 276
Q G V G +L+ I A+VDE + Y HPD + +AE
Sbjct: 465 QGGNNVTAGTTILEAIKAAVDESTVIDYTEHPDKSSIAE 503
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,717,553
Number of Sequences: 37544
Number of extensions: 323790
Number of successful extensions: 827
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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