Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10h07
(597 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15351| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 1e-13
SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13) 31 0.71
SB_23807| Best HMM Match : DUF885 (HMM E-Value=6.6e-16) 29 2.9
SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_27023| Best HMM Match : IncA (HMM E-Value=0.55) 28 6.6
SB_44856| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_55865| Best HMM Match : RRS1 (HMM E-Value=6.4e-07) 27 8.7
SB_47864| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12) 27 8.7
SB_4812| Best HMM Match : Sulfatase (HMM E-Value=0) 27 8.7
>SB_15351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 800
Score = 73.3 bits (172), Expect = 1e-13
Identities = 32/60 (53%), Positives = 41/60 (68%)
Frame = +1
Query: 415 VGNDEYAKLLKERAIADGVHVQYQVSNEVATGTCAVLVTGTHRSLCANLGAAQHFTPXHL 594
+G D + K L + A A GVHV Y ++ E+ TGTCAV +TG HRSL ANL AA ++T HL
Sbjct: 521 IGEDAFGKTLTDIATAAGVHVNYLINKEIPTGTCAVCITGKHRSLVANLAAANNYTKSHL 580
Score = 41.9 bits (94), Expect = 4e-04
Identities = 14/26 (53%), Positives = 22/26 (84%)
Frame = +1
Query: 295 YSELVDKYNAEYIAGGSVQNSLRVAQ 372
Y E++DK+N +Y+ GG+ QNS+R+AQ
Sbjct: 44 YQEMIDKFNVDYLPGGATQNSIRIAQ 69
>SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13)
Length = 1582
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 196 LLDISASVDEDLLKKYDLHPDDAIMAEEKHMPLYSELVD 312
LL++S VDE L P+ E++MPLY+ +D
Sbjct: 1198 LLNVSGLVDEGTLNSLQTRPETQEKCIEQNMPLYAVFID 1236
>SB_23807| Best HMM Match : DUF885 (HMM E-Value=6.6e-16)
Length = 879
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +1
Query: 136 MDVSDSICDQEGLLVGIGNPLLDISASVDEDLLK 237
M+VSDSI D L+ G+G PLLD+ ++ D ++
Sbjct: 317 MNVSDSILD--ALVKGLGQPLLDLINYLEGDHMR 348
>SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = -2
Query: 311 STSSE*SGMCFSSAIMASSGCRSYFFSKSSSTLADMSNKGFPMPTNNPSWSHMESETS 138
S+SS S SS+ +SS S S SSS+ + S+ +NN S S S +S
Sbjct: 191 SSSSSSSSSSSSSSSSSSSSSSSSSSSNSSSSSSSSSSSSSSSSSNNSSSSSSSSSSS 248
>SB_27023| Best HMM Match : IncA (HMM E-Value=0.55)
Length = 933
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 169 GLLVGIGNPLLDISASVDEDLLKKYDLHPDDAIMAEEKHMPLYSELVDK 315
G+ V +G PL ++ V L + H D ++AE K + SE V K
Sbjct: 794 GIGVLVGGPLAGVAGIVSRGLTSEVAKHEDTMVLAESKKNSI-SEQVSK 841
>SB_44856| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 501 SNWYMCSASNWYTPLTVRQSRCCTTLHTXS 590
S W+ CS + +T ++ RCCT T S
Sbjct: 49 STWFKCSNCSLKLLVTKQECRCCTEFATCS 78
>SB_55865| Best HMM Match : RRS1 (HMM E-Value=6.4e-07)
Length = 424
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 501 SNWYMCSASNWYTPLTVRQSRCCTTLHTXS 590
S W+ CS + +T + RCCT T S
Sbjct: 81 STWFKCSNCSLKLLVTKEECRCCTEFATCS 110
>SB_47864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 287 CHSTRNSLTSIMQSILLVEAFRIH 358
CH+T L SI +SI L AFR H
Sbjct: 49 CHATLFPLMSITRSIKLCHAFRSH 72
>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
Length = 1650
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 301 ELVDKYNAEYIAGGSVQNSLRVAQWILKKPN 393
E+V+KY G+VQN L+V++ KP+
Sbjct: 1273 EIVNKYVGSAATSGTVQNDLKVSESASYKPS 1303
>SB_4812| Best HMM Match : Sulfatase (HMM E-Value=0)
Length = 1040
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Frame = +1
Query: 382 KKPNICTYF---------GCVGNDEYAKLLKERAIADGVHVQYQVSNE-VATGTCAVLVT 531
KKPNI + GC GND A ++ +G + + ++ E + T + A L+T
Sbjct: 479 KKPNILIFIVDDLGYADLGCFGNDSLATPHIDKIATEGAKLTHNLAGESICTPSRAALLT 538
Query: 532 GTH 540
G +
Sbjct: 539 GRY 541
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,450,888
Number of Sequences: 59808
Number of extensions: 382871
Number of successful extensions: 912
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -