Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10h05
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 28 1.1
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 27 1.9
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 27 2.5
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 4.3
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 26 5.7
SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces ... 26 5.7
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 25 7.5
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|... 25 9.9
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 25 9.9
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 25 9.9
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces... 25 9.9
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 9.9
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 25 9.9
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 187 MNSPVSAFAVYRSNKQSNYEKKKNKSKRITNSS 285
+ +PVS+FA +NK +N ++KK S + S
Sbjct: 1108 IRTPVSSFAKQTTNKHANLKQKKTHSSKSDKKS 1140
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 217 YRSNKQSNYEKKKNKSKRITNSSKAL-PISP 306
+R QS+Y ++ N +RI+ SSK+L +SP
Sbjct: 303 FRRFSQSSYPRRSNYRRRISTSSKSLYELSP 333
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 529 DDKHDSDDIPSLIPISFTNFHESNLDSVDSCSSNGS 636
DDK D + +P +F+N H +D +DS +GS
Sbjct: 766 DDKTDENMFEVFLPTAFSNSH--LIDEIDSTEYSGS 799
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +1
Query: 481 GDDEQPVMKRKIKRNRDDKHDSDDIPSLIPISFTNFHES 597
GD + + K RN DD H IP F + HES
Sbjct: 479 GDTRKAGKRLKYSRNLDDYHICTQIPEDYSPKFLSQHES 517
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 520 RNRDDKHDSDDIPSLIPISFTNFHESNLDSVDSCSSNGSI 639
+NR DD+P P++ T F S L ++ S S+
Sbjct: 370 KNRIISKTFDDVPKRAPVAVTEFRPSELFELNENKSQRSL 409
>SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 252
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 281 PQKHFRSPQKHFRNPQKFIRNRN 349
PQ HF QK F N K+ RN
Sbjct: 12 PQNHFSDDQKEFLNHAKYRVKRN 34
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +1
Query: 496 PVMKRKIKRNRDDKHDSDDIPSLIPISFTNFHESNLDSVDSCSSNGSIDF 645
P++++++KR+R D D D L P S N +E++ D+ N S+ F
Sbjct: 254 PILEQRLKRHRIDVSDED----LHPSSQLNDNEASSLFPDTPRLNHSLSF 299
>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
2|||Manual
Length = 482
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 490 EQPVMKRKIKRNRDDKHDSDDIPSLIPISFTNFHESNLDSVDS 618
+Q + +K+K++ D++ S DIP L S + + D +D+
Sbjct: 149 DQATIPKKLKKDVDERVVSKDIPKLHRDSVESPESQDWDDLDA 191
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 529 DDKHDSDDIPSLIPISFTNFHESN 600
D ++ DD P++IP+ F F N
Sbjct: 226 DIVYEQDDQPTIIPLRFVKFQRVN 249
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 484 DDEQPVMKR-KIKRNRDDKHDSDDIPS 561
+DE+P K+ K R D++ D D+IPS
Sbjct: 1398 EDEEPKRKKSKSDRFDDEEKDLDEIPS 1424
>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 229 KQSNYEKKKNKSKRITNSSKALPIS 303
+Q++YEK+ N I SS +PIS
Sbjct: 300 EQADYEKELNDHVNIVKSSTYIPIS 324
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 184 KMNSPVSAFAVYRSNKQSNYEKKKNKSKRITNSSKALPISPKAL 315
K+N V +Y ++ ++ ++ I NSSKA+P K L
Sbjct: 859 KLNLSVILSDIYSCREEVLFQFNRHARSWIQNSSKAIPYQVKNL 902
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 607 SVDSCSSNGSIDFEPVQTDSVE 672
SV++ S N S+D EPVQ ++E
Sbjct: 815 SVNNSSVNPSLDSEPVQLSNME 836
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,073,674
Number of Sequences: 5004
Number of extensions: 34437
Number of successful extensions: 141
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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