Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h05
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)                 29   4.5  
SB_56695| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_49831| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   6.0  

>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
          Length = 440

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 266 KE*RTPQKHFRSPQKHFRNPQK 331
           K  RTP+K  RSP+K  R+P+K
Sbjct: 213 KRSRTPRKRSRSPRKRSRSPRK 234


>SB_56695| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 560 H*YLYLSLTSTNQIWIVLIHVQAMAVLILSLY 655
           H YLY +L S  ++ + ++ + A AVLI  LY
Sbjct: 133 HPYLYHNLMSRAKVAMTIVFIWAYAVLIAGLY 164


>SB_49831| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 339

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 560 H*YLYLSLTSTNQIWIVLIHVQAMAVLILSLY 655
           H YLY +L S  ++ + ++ + A AVLI  LY
Sbjct: 133 HPYLYHNLMSRAKVAMTIVFIWAYAVLIAGLY 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,765,534
Number of Sequences: 59808
Number of extensions: 243044
Number of successful extensions: 818
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)