Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h05
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81127-8|CAB03393.2|  495|Caenorhabditis elegans Hypothetical pr...    31   0.75 
Z77652-14|CAB01123.2|  495|Caenorhabditis elegans Hypothetical p...    31   0.75 
AF480439-1|AAM76083.1| 1037|Caenorhabditis elegans dicer-related...    29   4.0  
AF036696-4|AAB88350.1| 1037|Caenorhabditis elegans Dicer related...    29   4.0  
U97593-7|AAB52878.1|  591|Caenorhabditis elegans Prion-like-(q/n...    27   9.2  
U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    27   9.2  
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n...    27   9.2  

>Z81127-8|CAB03393.2|  495|Caenorhabditis elegans Hypothetical
           protein C06B3.3 protein.
          Length = 495

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +2

Query: 278 TPQKHFRSPQKHFRNPQKFIRNRNLYQK 361
           T +K F +P+K   NP++FIRN NL Q+
Sbjct: 405 TNEKIFENPEKF--NPERFIRNENLMQQ 430


>Z77652-14|CAB01123.2|  495|Caenorhabditis elegans Hypothetical
           protein C06B3.3 protein.
          Length = 495

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +2

Query: 278 TPQKHFRSPQKHFRNPQKFIRNRNLYQK 361
           T +K F +P+K   NP++FIRN NL Q+
Sbjct: 405 TNEKIFENPEKF--NPERFIRNENLMQQ 430


>AF480439-1|AAM76083.1| 1037|Caenorhabditis elegans dicer-related
           helicase protein.
          Length = 1037

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 487 DEQPVMKRKIKRNRDDKHDSDDIPSLI 567
           D   V++++I+RN +D  DSD I  LI
Sbjct: 141 DAVAVLRKEIERNEEDNQDSDFIKKLI 167


>AF036696-4|AAB88350.1| 1037|Caenorhabditis elegans Dicer related
           helicase protein 1 protein.
          Length = 1037

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 487 DEQPVMKRKIKRNRDDKHDSDDIPSLI 567
           D   V++++I+RN +D  DSD I  LI
Sbjct: 141 DAVAVLRKEIERNEEDNQDSDFIKKLI 167


>U97593-7|AAB52878.1|  591|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform b protein.
          Length = 591

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 508 RKIKRNRDDKHDSDDIPSLIPISFTNFHE-SNLDSVD 615
           R  KRN ++K ++  +PSL P +   + + SN   VD
Sbjct: 460 RNYKRNYEEKTETTTVPSLAPATNVTYKDLSNAQCVD 496


>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 508 RKIKRNRDDKHDSDDIPSLIPISFTNFHE-SNLDSVD 615
           R  KRN ++K ++  +PSL P +   + + SN   VD
Sbjct: 794 RNYKRNYEEKTETTTVPSLAPATNVTYKDLSNAQCVD 830


>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
            isoform a protein.
          Length = 1175

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 508  RKIKRNRDDKHDSDDIPSLIPISFTNFHE-SNLDSVD 615
            R  KRN ++K ++  +PSL P +   + + SN   VD
Sbjct: 1044 RNYKRNYEEKTETTTVPSLAPATNVTYKDLSNAQCVD 1080


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,309,300
Number of Sequences: 27780
Number of extensions: 190730
Number of successful extensions: 669
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)