Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h05
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    29   0.040
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.6  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   4.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.1  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 29.1 bits (62), Expect = 0.040
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +1

Query: 202 SAFAVYRSNKQSNYEKKKNKSKRITNSSKALPI 300
           S F +Y++NK S  +++K+ +K+   ++K L I
Sbjct: 591 SRFTIYKANKASKKKREKSSAKKERKATKTLAI 623


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 290 HFRSPQKHFRNP 325
           HFRSPQ H   P
Sbjct: 328 HFRSPQTHVMAP 339


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 541 DSDDIPSLIPISFTNFHESNLDSVDSCSSNGSID 642
           D +D P  IP S  N  E+N  S+ +  +NG ++
Sbjct: 153 DYNDKP--IPASCCNSPENNTCSISNSYTNGCVE 184


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 532  DKHDSDDIPSLIPISFTNFHESNLDSVDSCSSNGSIDFEPVQT 660
            DKH  D +P+LI        E    +V+   +  S+   P +T
Sbjct: 890  DKHILDKLPTLISNYIEAVKEGKFMNVNMLDTYESVHSFPTET 932


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 556 PSLIPISFTNFHESNLDSVDSCS 624
           P LIP   +  HE+N  +++ CS
Sbjct: 860 PFLIPEQTSISHENNQPTMNKCS 882


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 290 HFRSPQKHFRNP 325
           HFRSPQ H   P
Sbjct: 332 HFRSPQTHKMAP 343


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 290 HFRSPQKHFRNP 325
           HFRSPQ H   P
Sbjct: 332 HFRSPQTHKMAP 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,402
Number of Sequences: 438
Number of extensions: 2712
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)