BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov10h03 (444 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CR456979-1|CAG33260.1| 68|Homo sapiens SEC61G protein. 99 6e-21 BC051840-1|AAH51840.1| 68|Homo sapiens Sec61 gamma subunit pro... 99 6e-21 BC009480-1|AAH09480.1| 68|Homo sapiens Sec61 gamma subunit pro... 99 6e-21 >CR456979-1|CAG33260.1| 68|Homo sapiens SEC61G protein. Length = 68 Score = 99.1 bits (236), Expect = 6e-21 Identities = 47/67 (70%), Positives = 52/67 (77%) Frame = +2 Query: 89 MDQIAKFVEPGKQFAKDSIRLVRRCTKPDRKEFQKIAIATAXXXXXXXXXXXXVKLIHIP 268 MDQ+ +FVEP +QF KDSIRLV+RCTKPDRKEFQKIA+ATA VKLIHIP Sbjct: 1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIP 60 Query: 269 INNIIVG 289 INNIIVG Sbjct: 61 INNIIVG 67 >BC051840-1|AAH51840.1| 68|Homo sapiens Sec61 gamma subunit protein. Length = 68 Score = 99.1 bits (236), Expect = 6e-21 Identities = 47/67 (70%), Positives = 52/67 (77%) Frame = +2 Query: 89 MDQIAKFVEPGKQFAKDSIRLVRRCTKPDRKEFQKIAIATAXXXXXXXXXXXXVKLIHIP 268 MDQ+ +FVEP +QF KDSIRLV+RCTKPDRKEFQKIA+ATA VKLIHIP Sbjct: 1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIP 60 Query: 269 INNIIVG 289 INNIIVG Sbjct: 61 INNIIVG 67 >BC009480-1|AAH09480.1| 68|Homo sapiens Sec61 gamma subunit protein. Length = 68 Score = 99.1 bits (236), Expect = 6e-21 Identities = 47/67 (70%), Positives = 52/67 (77%) Frame = +2 Query: 89 MDQIAKFVEPGKQFAKDSIRLVRRCTKPDRKEFQKIAIATAXXXXXXXXXXXXVKLIHIP 268 MDQ+ +FVEP +QF KDSIRLV+RCTKPDRKEFQKIA+ATA VKLIHIP Sbjct: 1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIP 60 Query: 269 INNIIVG 289 INNIIVG Sbjct: 61 INNIIVG 67 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 55,397,465 Number of Sequences: 237096 Number of extensions: 988526 Number of successful extensions: 1389 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1350 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1381 length of database: 76,859,062 effective HSP length: 83 effective length of database: 57,180,094 effective search space used: 3659526016 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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