Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h03
         (444 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50460.1 68418.m06248 protein transport protein SEC61 gamma s...    80   6e-16
At4g24920.1 68417.m03568 protein transport protein SEC61 gamma s...    80   6e-16
At3g48570.1 68416.m05303 protein transport protein SEC61 gamma s...    75   2e-14
At3g21160.1 68416.m02673 mannosyl-oligosaccharide 1,2-alpha-mann...    26   10.0 

>At5g50460.1 68418.m06248 protein transport protein SEC61 gamma
           subunit, putative similar to Swiss-Prot:Q19967 protein
           transport protein SEC61 gamma subunit [Caenorhabditis
           elegans]
          Length = 69

 Score = 80.2 bits (189), Expect = 6e-16
 Identities = 40/68 (58%), Positives = 46/68 (67%)
 Frame = +2

Query: 89  MDQIAKFVEPGKQFAKDSIRLVRRCTKPDRKEFQKIAIATAXXXXXXXXXXXXVKLIHIP 268
           MD I   V+P + FAKDSIRLV+RC KPDRKEF K+A+ TA            VKLI IP
Sbjct: 1   MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 269 INNIIVGS 292
           INNIIVG+
Sbjct: 61  INNIIVGA 68


>At4g24920.1 68417.m03568 protein transport protein SEC61 gamma
           subunit, putative similar to Swiss-Prot:Q19967 protein
           transport protein SEC61 gamma subunit [Caenorhabditis
           elegans]
          Length = 69

 Score = 80.2 bits (189), Expect = 6e-16
 Identities = 40/68 (58%), Positives = 46/68 (67%)
 Frame = +2

Query: 89  MDQIAKFVEPGKQFAKDSIRLVRRCTKPDRKEFQKIAIATAXXXXXXXXXXXXVKLIHIP 268
           MD I   V+P + FAKDSIRLV+RC KPDRKEF K+A+ TA            VKLI IP
Sbjct: 1   MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 269 INNIIVGS 292
           INNIIVG+
Sbjct: 61  INNIIVGA 68


>At3g48570.1 68416.m05303 protein transport protein SEC61 gamma
           subunit, putative similar to Swiss-Prot:Q19967 protein
           transport protein SEC61 gamma subunit [Caenorhabditis
           elegans]
          Length = 69

 Score = 75.4 bits (177), Expect = 2e-14
 Identities = 36/68 (52%), Positives = 45/68 (66%)
 Frame = +2

Query: 89  MDQIAKFVEPGKQFAKDSIRLVRRCTKPDRKEFQKIAIATAXXXXXXXXXXXXVKLIHIP 268
           M+ I   ++P + FAK S+RLV+RC KPDRKEF K+A+ TA            VKL+ IP
Sbjct: 1   MEAIDSAIDPLRDFAKSSVRLVQRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLVFIP 60

Query: 269 INNIIVGS 292
           INNIIVGS
Sbjct: 61  INNIIVGS 68


>At3g21160.1 68416.m02673 mannosyl-oligosaccharide
           1,2-alpha-mannosidase, putative similar to
           mannosyl-oligosaccharide 1,2-alpha-mannosidase [Glycine
           max][GI:6552504]
          Length = 572

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 73  NY*FNNGSDRKIRRAWQAIR 132
           NY FN+GSD  +  +W  +R
Sbjct: 425 NYFFNSGSDMSVGTSWNILR 444


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,251,456
Number of Sequences: 28952
Number of extensions: 143882
Number of successful extensions: 288
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)