Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h01
         (751 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   1.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   1.1  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    21   8.0  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 78  LNSVIKKCPVLTLTQFTLKNSRMNSEK 158
           LN  IKK P+  +  FT+   ++N  +
Sbjct: 266 LNLTIKKMPIAIVAPFTIVEPKLNKHE 292


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 78  LNSVIKKCPVLTLTQFTLKNSRMNSEK 158
           LN  IKK P+  +  FT+   ++N  +
Sbjct: 158 LNLTIKKMPIAIVAPFTIVEPKLNKHE 184


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 539 YLVVFLEWLRRGNTRRN 489
           YLV+F+++ +  N+R N
Sbjct: 377 YLVIFIQFDQSSNSRNN 393


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,451
Number of Sequences: 336
Number of extensions: 2970
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)