Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h01
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associat...   111   1e-25
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    29   0.94 
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    27   2.2  
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    27   2.2  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    27   3.8  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    25   8.7  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     25   8.7  

>SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associated
           complex beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score =  111 bits (267), Expect = 1e-25
 Identities = 64/149 (42%), Positives = 84/149 (56%), Gaps = 8/149 (5%)
 Frame = +3

Query: 144 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTA--ATDDXXXXXXXXXXXVNTIPGIEEVN 317
           M+  KL KLQ+  RIGGKGTPRRK K    +A  A DD           +  + GI+EVN
Sbjct: 1   MDPSKLAKLQAGARIGGKGTPRRKVKKPSKSAMSAADDKKVQGALKKLNMQNLAGIQEVN 60

Query: 318 MIKEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIAS 497
           M KEDG VI+F  P   +SL   T AI G  E K  +E+LPGIL+ LGP+ L  L+++A 
Sbjct: 61  MFKEDGGVINFRAPTVHSSLPNETTAIYGKAEEKTLSEILPGILNNLGPESLTALRQMAE 120

Query: 498 SVAAPK------PLEEDDEVPNLVGNFDE 566
            +   +         +D E+P+LV  FDE
Sbjct: 121 QLKVSEGEKGADAQADDGEIPDLVEKFDE 149


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 527 FLEWLRRGNTRRNPFQSVQAVGSELAEDT 441
           F++WL  GN+ R PF       SE  E+T
Sbjct: 126 FVDWLGMGNSSRPPFDIKGQTASEKVEET 154


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 81  NSVIKKCPVLTLTQFTLKNSRMNSEKLKKLQSQVRIGG-KGTPRRKKKV 224
           NSV++K         +  NSR+NS    +  S V + G  G+P  K+K+
Sbjct: 131 NSVVEKISQKNQEARSRANSRVNSRANSRANSSVSLAGMDGSPNWKRKM 179


>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/73 (21%), Positives = 32/73 (43%)
 Frame = +3

Query: 360 KAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIASSVAAPKPLEEDDEV 539
           + + +L++   A+      ++    +   ++ LGPD  ++ K I SS      L+ +D +
Sbjct: 211 RPEEALSSLKTALDSQPNYEEALSNMTTAITDLGPDAPSQAKNILSSFTNSSTLKLNDHL 270

Query: 540 PNLVGNFDEASKQ 578
                 FD  S Q
Sbjct: 271 NEKAQEFDTFSTQ 283


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +3

Query: 447 LSQLGPDGLNRLKRIASSVAAPKPLEEDDEVPNLVGNF-DEASKQ 578
           +S +G +  +  K++A      + +E++DE  NL G+F +E++KQ
Sbjct: 420 VSSVGKEQNHTEKQVAIETPEQQKVEKEDEHLNLQGSFIEESTKQ 464


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 132 KNSRMNSEKLKKLQSQVRIGGKGTPRRKKKV 224
           K  +   +KLKK   ++++    T +RK+KV
Sbjct: 148 KEKKEKKDKLKKKSKRLKLDDSHTQKRKRKV 178


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 487 GLRRVLPRLSHSRKTTRYLTSSATLTKPQ 573
           GL+R   RL H  K+TRY+ ++A +   +
Sbjct: 26  GLKRFGCRLYHHSKSTRYIDATAKVVSQE 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,645,503
Number of Sequences: 5004
Number of extensions: 47552
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)