Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h01
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...   186   2e-47
U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    31   1.2  
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    29   4.7  

>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score =  186 bits (452), Expect = 2e-47
 Identities = 92/152 (60%), Positives = 113/152 (74%), Gaps = 5/152 (3%)
 Frame = +3

Query: 135 NSRMNSEKLKKLQSQ---VRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGI 305
           +S+  +E++KKLQ+Q   VRIGGKGTPRRKKKV+H TAA DD           V  IPGI
Sbjct: 2   DSKAIAERIKKLQAQQEHVRIGGKGTPRRKKKVIHKTAAADDKKLQSNLKKLSVTNIPGI 61

Query: 306 EEVNMIKEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLK 485
           EEVNMIK+DGTVIHFNNPK Q S+ ANTF++TG  +NKQ TEMLPGIL+QLGP+ L  LK
Sbjct: 62  EEVNMIKDDGTVIHFNNPKVQTSVPANTFSVTGSADNKQITEMLPGILNQLGPESLTHLK 121

Query: 486 RIASSVA--APKPLEEDDEVPNLVGNFDEASK 575
           ++A++V    P    ED++VP LVG+FD ASK
Sbjct: 122 KLANNVTKLGPDGKGEDEDVPELVGDFDAASK 153


>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 450 SQLGPDGLNRLKRIASSVAAPKPLEEDDEVPNLVGNFD 563
           S+ G  G +RL   A+  A P  ++   ++PNL  NFD
Sbjct: 203 SEAGSTGKDRLLVTAAVAAGPATIDAGYDIPNLAPNFD 240


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 260 AVIAQKVVSEHNSWHRRGKYDQRGR 334
           ++I+  V + H++WH  G  D RGR
Sbjct: 34  SIISGDVNAHHSAWHSEGSEDTRGR 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,095,433
Number of Sequences: 27780
Number of extensions: 292021
Number of successful extensions: 774
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)