Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10g24
(566 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 133 9e-32
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 75 4e-14
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 72 2e-13
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 72 3e-13
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 71 4e-13
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 70 1e-12
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 69 3e-12
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 68 4e-12
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 68 4e-12
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 68 4e-12
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 68 4e-12
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 68 4e-12
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 68 4e-12
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 67 9e-12
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 66 1e-11
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 66 1e-11
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 66 1e-11
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 66 2e-11
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 66 2e-11
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 66 2e-11
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 66 2e-11
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 66 2e-11
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 66 2e-11
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 64 5e-11
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 64 5e-11
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 64 6e-11
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 63 1e-10
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 63 1e-10
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 63 1e-10
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 63 1e-10
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 63 1e-10
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 63 1e-10
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 63 1e-10
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 63 1e-10
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 62 2e-10
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 62 2e-10
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 62 3e-10
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 62 3e-10
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 62 3e-10
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 62 3e-10
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 62 3e-10
At5g51300.2 68418.m06360 splicing factor-related contains simila... 61 4e-10
At5g51300.1 68418.m06359 splicing factor-related contains simila... 61 4e-10
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 61 4e-10
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 61 6e-10
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 60 8e-10
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 60 8e-10
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 60 8e-10
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 60 1e-09
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 60 1e-09
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 60 1e-09
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 60 1e-09
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 60 1e-09
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 60 1e-09
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 58 3e-09
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 58 3e-09
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 58 3e-09
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 58 4e-09
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 58 5e-09
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 58 5e-09
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 57 9e-09
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 57 9e-09
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 57 9e-09
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 57 9e-09
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 57 9e-09
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 57 9e-09
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 56 1e-08
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 56 2e-08
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 56 2e-08
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 56 2e-08
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 56 2e-08
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 56 2e-08
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 56 2e-08
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 56 2e-08
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 56 2e-08
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 56 2e-08
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 55 3e-08
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 55 3e-08
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 55 3e-08
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 55 3e-08
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 55 4e-08
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 55 4e-08
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 54 5e-08
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 54 5e-08
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 54 5e-08
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 54 5e-08
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 54 7e-08
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 54 7e-08
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 54 7e-08
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 54 7e-08
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 54 7e-08
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 53 1e-07
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 53 1e-07
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 53 1e-07
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 53 1e-07
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 53 1e-07
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 53 2e-07
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 53 2e-07
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 53 2e-07
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 53 2e-07
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 52 2e-07
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 52 2e-07
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 52 2e-07
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 52 2e-07
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 52 2e-07
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 52 2e-07
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 52 2e-07
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 52 2e-07
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 52 2e-07
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 52 2e-07
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 52 3e-07
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 52 3e-07
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 52 3e-07
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 52 3e-07
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 52 3e-07
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 52 3e-07
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 52 3e-07
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 52 3e-07
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 52 4e-07
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 52 4e-07
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 52 4e-07
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 51 5e-07
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 51 5e-07
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 51 5e-07
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 51 5e-07
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 51 5e-07
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 51 5e-07
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 51 6e-07
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 51 6e-07
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 51 6e-07
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 51 6e-07
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 51 6e-07
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 50 8e-07
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 50 8e-07
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 50 8e-07
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 50 8e-07
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 50 1e-06
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 50 1e-06
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 50 1e-06
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 50 1e-06
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 50 1e-06
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 49 2e-06
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 49 2e-06
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 49 2e-06
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 48 3e-06
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 48 3e-06
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 48 3e-06
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 48 3e-06
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 48 3e-06
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 48 3e-06
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 48 3e-06
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 48 3e-06
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 48 3e-06
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 48 4e-06
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 48 4e-06
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 48 6e-06
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 47 8e-06
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 47 1e-05
At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing ... 46 2e-05
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 46 2e-05
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 46 2e-05
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 46 2e-05
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 45 3e-05
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 45 4e-05
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 45 4e-05
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 44 5e-05
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 44 5e-05
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 44 7e-05
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 44 9e-05
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 44 9e-05
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 43 1e-04
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 42 3e-04
At2g33440.1 68415.m04099 splicing factor family protein similar ... 42 3e-04
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 42 4e-04
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 41 7e-04
At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protei... 41 7e-04
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 40 0.001
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 40 0.001
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 40 0.001
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 40 0.001
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 40 0.002
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 40 0.002
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 40 0.002
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 40 0.002
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 40 0.002
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 38 0.004
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 38 0.004
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 38 0.005
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 38 0.005
At2g47310.1 68415.m05906 flowering time control protein-related ... 38 0.005
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.005
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.005
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 37 0.008
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 37 0.011
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 37 0.011
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 36 0.014
At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) famil... 36 0.014
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 36 0.025
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 34 0.058
At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing ... 33 0.10
At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing ... 33 0.10
At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing ... 33 0.13
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 33 0.18
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 33 0.18
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 33 0.18
At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing ... 31 0.41
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil... 31 0.71
At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein... 30 0.94
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 29 1.6
At3g23710.1 68416.m02981 chloroplast inner membrane import prote... 29 2.2
At5g53180.1 68418.m06611 polypyrimidine tract-binding protein, p... 29 2.9
At5g02950.1 68418.m00238 PWWP domain-containing protein predicte... 29 2.9
At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (... 29 2.9
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 28 3.8
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 27 6.6
At3g52980.1 68416.m05840 RNA recognition motif (RRM)-containing ... 27 8.7
At3g26050.1 68416.m03244 expressed protein 27 8.7
At2g34930.1 68415.m04288 disease resistance family protein conta... 27 8.7
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 133 bits (321), Expect = 9e-32
Identities = 63/92 (68%), Positives = 73/92 (79%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
R VFVGNIPY+ATEE+L++I EVGPV+SF+LV DRETGKPKGYGFCEYKD+ETALSA R
Sbjct: 9 RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARR 68
Query: 346 NLNGYEIGGRSLRVDNACTEKSRMEMQALMQG 441
NL YEI GR LRVD A +K + + QG
Sbjct: 69 NLQSYEINGRQLRVDFAENDKGTDKTRDQSQG 100
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 74.5 bits (175), Expect = 4e-14
Identities = 34/88 (38%), Positives = 54/88 (61%)
Frame = +1
Query: 157 KSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALS 336
K+ V+VG IP++ TE L +FS+ G ++ L+ D+ TGK KG+ F Y+DQ + +
Sbjct: 33 KNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTIL 92
Query: 337 AMRNLNGYEIGGRSLRVDNACTEKSRME 420
A+ NLNG + GR+++VD+ K E
Sbjct: 93 AVDNLNGALVLGRTIKVDHCGAYKKHEE 120
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 72.1 bits (169), Expect = 2e-13
Identities = 35/97 (36%), Positives = 59/97 (60%)
Frame = +1
Query: 118 DKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGY 297
DK K +E + ++ +FVGN+ + T E L F E G V+ ++VFD +TG+ +GY
Sbjct: 162 DKPKPNKEP-LYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGY 220
Query: 298 GFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEK 408
GF Y + +A+ +L+G+E+ GR++RV+ A +K
Sbjct: 221 GFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257
Score = 45.6 bits (103), Expect = 2e-05
Identities = 23/83 (27%), Positives = 42/83 (50%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
++ GN+PY L I + +++++R+TG+ +G+ F + E + NL
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146
Query: 352 NGYEIGGRSLRVDNACTEKSRME 420
+G E GR+L+V+ A K E
Sbjct: 147 DGTEYLGRALKVNFADKPKPNKE 169
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 71.7 bits (168), Expect = 3e-13
Identities = 32/75 (42%), Positives = 45/75 (60%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+FVG +PY TE +++++ GP+ F LV DRETG KGY FC Y+D A L
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAAL 436
Query: 352 NGYEIGGRSLRVDNA 396
NG ++G ++L V A
Sbjct: 437 NGIKMGDKTLTVRRA 451
Score = 27.5 bits (58), Expect = 6.6
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFK------LVFDRETGKPKGYGFCEYKDQET 327
R V+VG +P A E+ + FS+V + V + K + F E + E
Sbjct: 255 RRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEE 314
Query: 328 ALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVENP 459
A +AM L+G + G ++V + A GP NP
Sbjct: 315 ASNAMA-LDGIILEGVPVKVRRPTDYNPSL---AATLGPSQPNP 354
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 71.3 bits (167), Expect = 4e-13
Identities = 34/83 (40%), Positives = 55/83 (66%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
SV+VG +PY+ TEE ++ +FS G VL+ K+V DR + K YGF + ++ +A A+ +
Sbjct: 8 SVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSADDAIED 66
Query: 349 LNGYEIGGRSLRVDNACTEKSRM 417
++G IGGR++RV++ T RM
Sbjct: 67 MDGKSIGGRAVRVNDVTTRGGRM 89
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 69.7 bits (163), Expect = 1e-12
Identities = 31/98 (31%), Positives = 57/98 (58%)
Frame = +1
Query: 121 KSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYG 300
++K ++ S V+ GN+ + T + LKD F + VL K++++R TG+ +G+G
Sbjct: 204 RTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFG 263
Query: 301 FCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSR 414
F ++ E SA+ +NG E+ GR+LR+ N +E+ +
Sbjct: 264 FISFESAENVQSALATMNGVEVEGRALRL-NLASEREK 300
Score = 67.3 bits (157), Expect = 7e-12
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +1
Query: 118 DKSKEKEEQSIMDKSMRS-VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKG 294
++ E+E+Q+ ++VGN+PY T +L IF E G V+ ++V+D+ T + +G
Sbjct: 99 EEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRG 158
Query: 295 YGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 390
+GF E A AM+ N +IGGR+++V+
Sbjct: 159 FGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVN 190
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 68.5 bits (160), Expect = 3e-12
Identities = 36/89 (40%), Positives = 54/89 (60%)
Frame = +1
Query: 142 QSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQ 321
QSI S +FVG I Y E L++ FS+ G V+ K++ DRETG+ +G+ F +
Sbjct: 26 QSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTST 85
Query: 322 ETALSAMRNLNGYEIGGRSLRVDNACTEK 408
E A +AM+ L+G ++ GR +RV N TE+
Sbjct: 86 EEASNAMQ-LDGQDLHGRRIRV-NYATER 112
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 68.1 bits (159), Expect = 4e-12
Identities = 29/85 (34%), Positives = 54/85 (63%)
Frame = +1
Query: 142 QSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQ 321
Q+I S +F+G + Y E+ L++ F++ G V+ +++ DRETG+ +G+GF +
Sbjct: 32 QAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSS 91
Query: 322 ETALSAMRNLNGYEIGGRSLRVDNA 396
E A SA++ L+G ++ GR ++V+ A
Sbjct: 92 EAASSAIQALDGRDLHGRVVKVNYA 116
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 68.1 bits (159), Expect = 4e-12
Identities = 31/97 (31%), Positives = 61/97 (62%)
Frame = +1
Query: 124 SKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGF 303
S+ + + + D + R ++VGN+P++ +L+ +FSE G V+ ++V DRETG+ +G+GF
Sbjct: 194 SRPERQPRVYDAAFR-IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGF 252
Query: 304 CEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSR 414
+ ++ A+ L+G + GR+++V N E++R
Sbjct: 253 VQMSNENEVNVAIAALDGQNLEGRAIKV-NVAEERTR 288
Score = 66.1 bits (154), Expect = 2e-11
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Frame = +1
Query: 103 TIIKMDKSKEKEEQSIMDKSMRS--VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRE 276
T + +D+S E E+ + +FVGN+PY+ + L +F + G V +++++R+
Sbjct: 90 TSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRD 149
Query: 277 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQ 426
T + +G+GF E A A+ N +E+ GR L V+ A SR E Q
Sbjct: 150 TDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQ 199
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 68.1 bits (159), Expect = 4e-12
Identities = 35/95 (36%), Positives = 51/95 (53%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+FVG +PY TE +++++ G + F LV DRETG KGY FC Y+D A L
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 352 NGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVEN 456
NG ++G ++L V R ++Q P+ EN
Sbjct: 421 NGIKMGDKTLTV-------RRANQGTMLQKPEQEN 448
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 68.1 bits (159), Expect = 4e-12
Identities = 35/95 (36%), Positives = 51/95 (53%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+FVG +PY TE +++++ G + F LV DRETG KGY FC Y+D A L
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 352 NGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVEN 456
NG ++G ++L V R ++Q P+ EN
Sbjct: 421 NGIKMGDKTLTV-------RRANQGTMLQKPEQEN 448
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 68.1 bits (159), Expect = 4e-12
Identities = 35/95 (36%), Positives = 51/95 (53%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+FVG +PY TE +++++ G + F LV DRETG KGY FC Y+D A L
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 352 NGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVEN 456
NG ++G ++L V R ++Q P+ EN
Sbjct: 421 NGIKMGDKTLTV-------RRANQGTMLQKPEQEN 448
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 68.1 bits (159), Expect = 4e-12
Identities = 31/91 (34%), Positives = 57/91 (62%)
Frame = +1
Query: 124 SKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGF 303
S+ + + + + R V+VGN+P++ +L+ +FSE G V+ ++V+DRETG+ +G+GF
Sbjct: 231 SRPERAPRVYEPAFR-VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGF 289
Query: 304 CEYKDQETALSAMRNLNGYEIGGRSLRVDNA 396
D + A+ L+G + GR++RV+ A
Sbjct: 290 VTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
Score = 60.5 bits (140), Expect = 8e-10
Identities = 27/83 (32%), Positives = 47/83 (56%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+FVGN+ Y+ + L +F + G V +++++RET + +G+GF + A +A+
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 352 NGYEIGGRSLRVDNACTEKSRME 420
N Y++ GR L V+ A SR E
Sbjct: 212 NRYDLNGRLLTVNKAAPRGSRPE 234
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 66.9 bits (156), Expect = 9e-12
Identities = 26/75 (34%), Positives = 50/75 (66%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
V+VGN+ + + L+ +FSE G V+ ++++DR++G+ KG+GF Y + +A+++L
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
Query: 352 NGYEIGGRSLRVDNA 396
+G ++ GR +RV A
Sbjct: 266 DGADLDGRQIRVSEA 280
Score = 60.9 bits (141), Expect = 6e-10
Identities = 25/73 (34%), Positives = 42/73 (57%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+FVGN+P+ +L +F G V ++++D+ TG+ +G+GF +A +
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 352 NGYEIGGRSLRVD 390
NGYE+ GR LRV+
Sbjct: 153 NGYELDGRPLRVN 165
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 66.5 bits (155), Expect = 1e-11
Identities = 26/75 (34%), Positives = 48/75 (64%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+F+G + + + L+D F+ G V+ K++ DRETG+ +G+GF + D+ A +A+ +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 352 NGYEIGGRSLRVDNA 396
+G E+ GR +RV+ A
Sbjct: 97 DGKELNGRHIRVNPA 111
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 66.5 bits (155), Expect = 1e-11
Identities = 26/75 (34%), Positives = 48/75 (64%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+F+G + + + L+D F+ G V+ K++ DRETG+ +G+GF + D+ A +A+ +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 352 NGYEIGGRSLRVDNA 396
+G E+ GR +RV+ A
Sbjct: 97 DGKELNGRHIRVNPA 111
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 66.5 bits (155), Expect = 1e-11
Identities = 44/137 (32%), Positives = 72/137 (52%)
Frame = +1
Query: 118 DKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGY 297
++ KEK E+ M + +++V N+ TEE+L+ FS+ G + S KL+ D E GK KG+
Sbjct: 288 EQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKGF 346
Query: 298 GFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVENPYGDPVE 477
GF + E A+ A++ +G G+ L V A ++ R +MQ +Q +G+ VE
Sbjct: 347 GFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDR-KMQLQVQ-------FGNRVE 398
Query: 478 PEKAPEAISKAVATLPP 528
K+ + S T P
Sbjct: 399 ARKSSSSASVNPGTYAP 415
Score = 53.2 bits (122), Expect = 1e-07
Identities = 26/84 (30%), Positives = 48/84 (57%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
+VFV N+P T L+D+F + G ++S K V E GK +GYGF +++ ++ A +A++
Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCK-VATLEDGKSRGYGFVQFEQEDAAHAAIQT 171
Query: 349 LNGYEIGGRSLRVDNACTEKSRME 420
LN + + + V + R++
Sbjct: 172 LNSTIVADKEIYVGKFMKKTDRVK 195
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/105 (23%), Positives = 54/105 (51%)
Frame = +1
Query: 109 IKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKP 288
I + K +K ++ ++ ++++ N+ + +E+ L++ F+E G ++S + D E
Sbjct: 182 IYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKD-ENRLC 240
Query: 289 KGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEM 423
+GY F + + E A A +NG + G + L V A + R ++
Sbjct: 241 RGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQL 285
Score = 40.7 bits (91), Expect = 7e-04
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
S++VG++ TE L D F+E + S +L D +G+ YG+ + ++ A A+
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 349 LNGYEIGGRSLRV 387
N + G+ +RV
Sbjct: 85 KNNSLLNGKMIRV 97
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 66.1 bits (154), Expect = 2e-11
Identities = 27/74 (36%), Positives = 47/74 (63%)
Frame = +1
Query: 175 FVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLN 354
FVG + + +E L+ FS+ G V+ K++ DRE+G+ +G+GF +KD++ A+ +N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 355 GYEIGGRSLRVDNA 396
G E+ GR + V+ A
Sbjct: 69 GKELDGRVITVNEA 82
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 66.1 bits (154), Expect = 2e-11
Identities = 27/74 (36%), Positives = 47/74 (63%)
Frame = +1
Query: 175 FVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLN 354
FVG + + +E L+ FS+ G V+ K++ DRE+G+ +G+GF +KD++ A+ +N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 355 GYEIGGRSLRVDNA 396
G E+ GR + V+ A
Sbjct: 69 GKELDGRVITVNEA 82
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 66.1 bits (154), Expect = 2e-11
Identities = 27/74 (36%), Positives = 47/74 (63%)
Frame = +1
Query: 175 FVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLN 354
FVG + + +E L+ FS+ G V+ K++ DRE+G+ +G+GF +KD++ A+ +N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 355 GYEIGGRSLRVDNA 396
G E+ GR + V+ A
Sbjct: 69 GKELDGRVITVNEA 82
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 66.1 bits (154), Expect = 2e-11
Identities = 26/74 (35%), Positives = 47/74 (63%)
Frame = +1
Query: 175 FVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLN 354
FVG + + + L+ F++ G V+ K++ DRETG+ +G+GF +KD++ A+ +N
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 355 GYEIGGRSLRVDNA 396
G ++ GRS+ V+ A
Sbjct: 71 GQDLDGRSITVNEA 84
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 66.1 bits (154), Expect = 2e-11
Identities = 26/74 (35%), Positives = 47/74 (63%)
Frame = +1
Query: 175 FVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLN 354
FVG + + + L+ F++ G V+ K++ DRETG+ +G+GF +KD++ A+ +N
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 355 GYEIGGRSLRVDNA 396
G ++ GRS+ V+ A
Sbjct: 71 GQDLDGRSITVNEA 84
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 65.7 bits (153), Expect = 2e-11
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEV-GPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
++FVG++ E T+ L D F V G V K+V DR TG+ KGYGF + D+ + AM
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMT 214
Query: 346 NLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVEN 456
+NG R +R+ A + + A+ Q Q N
Sbjct: 215 EMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGAN 251
Score = 48.4 bits (110), Expect = 3e-06
Identities = 32/110 (29%), Positives = 57/110 (51%)
Frame = +1
Query: 154 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 333
D + ++FVG + T+++LK IF + G +L K+ K GF +Y ++ +A
Sbjct: 256 DPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIP------PGKRCGFVQYANKASAE 309
Query: 334 SAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVENPYGDPVEPE 483
A+ LNG ++GG+S+R+ + + + QA G YG P +P+
Sbjct: 310 HALSVLNGTQLGGQSIRLSWGRSPNKQSD-QAQWNG---GGYYGYPPQPQ 355
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/65 (26%), Positives = 37/65 (56%)
Frame = +1
Query: 163 MRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAM 342
++S+++G++ E + +F++ G S K++ ++ TG+ +GYGF E+ A +
Sbjct: 59 VKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVL 118
Query: 343 RNLNG 357
+ NG
Sbjct: 119 QTYNG 123
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 64.5 bits (150), Expect = 5e-11
Identities = 28/80 (35%), Positives = 50/80 (62%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+FVG + + + LK F+ G V ++ DRETG+ +G+GF + +++A +A++ +
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 352 NGYEIGGRSLRVDNACTEKS 411
+G E+ GR +RV N TE+S
Sbjct: 97 DGKELNGRQIRV-NLATERS 115
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 64.5 bits (150), Expect = 5e-11
Identities = 28/80 (35%), Positives = 50/80 (62%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+FVG + + + LK F+ G V ++ DRETG+ +G+GF + +++A +A++ +
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 352 NGYEIGGRSLRVDNACTEKS 411
+G E+ GR +RV N TE+S
Sbjct: 97 DGKELNGRQIRV-NLATERS 115
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 64.1 bits (149), Expect = 6e-11
Identities = 25/69 (36%), Positives = 45/69 (65%)
Frame = +1
Query: 175 FVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLN 354
FVG + + E+ ++ F+E G V K++ DRETG+ KG+ F +KD+++ +A+ +N
Sbjct: 47 FVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMN 106
Query: 355 GYEIGGRSL 381
G E+ GR++
Sbjct: 107 GQELDGRNI 115
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 62.9 bits (146), Expect = 1e-10
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Frame = +1
Query: 118 DKSKEKEEQSI-MDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKG 294
D+ +EK + + VF+G +P + EE L+D+ E+G + +L+ DR++G KG
Sbjct: 99 DEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKG 158
Query: 295 YGFCEYKDQETALSAMRNLNGYEIGGRSLR 384
Y F +K ++ A A+ L+ E G+++R
Sbjct: 159 YAFVAFKTKDVAQKAIEELHSKEFKGKTIR 188
Score = 53.6 bits (123), Expect = 9e-08
Identities = 27/87 (31%), Positives = 47/87 (54%)
Frame = +1
Query: 127 KEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFC 306
K E S +++++V NIP + E+LK++F G V K+V G + +GF
Sbjct: 279 KSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVT--KIVTPPGKGGKRDFGFV 336
Query: 307 EYKDQETALSAMRNLNGYEIGGRSLRV 387
Y ++ +AL A+++ YE+ G+ L V
Sbjct: 337 HYAERSSALKAVKDTERYEVNGQPLEV 363
Score = 37.1 bits (82), Expect = 0.008
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +1
Query: 127 KEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGP-VLSFKLVFD-RETGKPKGYG 300
K K + + ++ +F+GNIP TE++ + + +VGP V + +L+ D T + +G+
Sbjct: 183 KGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFA 242
Query: 301 FCEYKDQETA 330
F Y + A
Sbjct: 243 FVLYYNNACA 252
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 62.9 bits (146), Expect = 1e-10
Identities = 24/75 (32%), Positives = 48/75 (64%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
++VGN+ + + L+++F+E G V+ ++++DR++G+ KG+GF + A+ +L
Sbjct: 251 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 310
Query: 352 NGYEIGGRSLRVDNA 396
NG ++ GR +RV A
Sbjct: 311 NGADLDGRQIRVSEA 325
Score = 57.6 bits (133), Expect = 5e-09
Identities = 29/92 (31%), Positives = 49/92 (53%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+FVGN+ + +L +F G V ++++D+ TG+ +G+GF +A +
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 352 NGYEIGGRSLRVDNACTEKSRMEMQALMQGPQ 447
NGYE GR LRV NA + E ++ +GP+
Sbjct: 161 NGYEFEGRPLRV-NAGPPPPKRE-ESFSRGPR 190
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 62.9 bits (146), Expect = 1e-10
Identities = 24/75 (32%), Positives = 48/75 (64%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
++VGN+ + + L+++F+E G V+ ++++DR++G+ KG+GF + A+ +L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 352 NGYEIGGRSLRVDNA 396
NG ++ GR +RV A
Sbjct: 319 NGADLDGRQIRVSEA 333
Score = 57.6 bits (133), Expect = 5e-09
Identities = 29/92 (31%), Positives = 49/92 (53%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+FVGN+ + +L +F G V ++++D+ TG+ +G+GF +A +
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 352 NGYEIGGRSLRVDNACTEKSRMEMQALMQGPQ 447
NGYE GR LRV NA + E ++ +GP+
Sbjct: 161 NGYEFEGRPLRV-NAGPPPPKRE-ESFSRGPR 190
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 62.9 bits (146), Expect = 1e-10
Identities = 25/90 (27%), Positives = 54/90 (60%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+FVG + ++ TE +L+ F G + +++ R+TG+P+G+GF + D+ A A++++
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 352 NGYEIGGRSLRVDNACTEKSRMEMQALMQG 441
+G E+G + + V+ A + ++ L +G
Sbjct: 74 HGRELGNKVISVNKAEPKVGGEDVDQLKKG 103
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 62.9 bits (146), Expect = 1e-10
Identities = 25/90 (27%), Positives = 54/90 (60%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+FVG + ++ TE +L+ F G + +++ R+TG+P+G+GF + D+ A A++++
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 352 NGYEIGGRSLRVDNACTEKSRMEMQALMQG 441
+G E+G + + V+ A + ++ L +G
Sbjct: 74 HGRELGNKVISVNKAEPKVGGEDVDQLKKG 103
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 62.9 bits (146), Expect = 1e-10
Identities = 30/80 (37%), Positives = 48/80 (60%)
Frame = +1
Query: 157 KSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALS 336
+S R+V+VGN+P + E +++D+FS+ GPV+ L + +P GY F E+ D A
Sbjct: 4 RSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAED 60
Query: 337 AMRNLNGYEIGGRSLRVDNA 396
A+ +GY+ G LRV+ A
Sbjct: 61 AIHGRDGYDFDGHRLRVELA 80
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 62.9 bits (146), Expect = 1e-10
Identities = 30/80 (37%), Positives = 48/80 (60%)
Frame = +1
Query: 157 KSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALS 336
+S R+V+VGN+P + E +++D+FS+ GPV+ L + +P GY F E+ D A
Sbjct: 4 RSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAED 60
Query: 337 AMRNLNGYEIGGRSLRVDNA 396
A+ +GY+ G LRV+ A
Sbjct: 61 AIHGRDGYDFDGHRLRVELA 80
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 62.9 bits (146), Expect = 1e-10
Identities = 30/80 (37%), Positives = 48/80 (60%)
Frame = +1
Query: 157 KSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALS 336
+S R+V+VGN+P + E +++D+FS+ GPV+ L + +P GY F E+ D A
Sbjct: 4 RSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAED 60
Query: 337 AMRNLNGYEIGGRSLRVDNA 396
A+ +GY+ G LRV+ A
Sbjct: 61 AIHGRDGYDFDGHRLRVELA 80
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 62.5 bits (145), Expect = 2e-10
Identities = 29/75 (38%), Positives = 43/75 (57%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
+++FV + YE++E K+K F GP+ LV D+ T KPKGY F EY +A +
Sbjct: 138 KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYK 197
Query: 346 NLNGYEIGGRSLRVD 390
+G +I GR + VD
Sbjct: 198 QADGQKIDGRRVLVD 212
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 62.5 bits (145), Expect = 2e-10
Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 2/144 (1%)
Frame = +1
Query: 118 DKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGY 297
+K + K+ + + +V V +PY T +L++ FSEVGPV LV ++ + + +G+
Sbjct: 4 NKRERKDGEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGF 63
Query: 298 GFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQA-LMQGPQV-ENPYGDP 471
F ++ QE A+ NG +GGR + V A S E + +G V +N G
Sbjct: 64 AFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAHRPSLQERRTKAAEGISVPDNSQGQS 123
Query: 472 VEPEKAPEAISKAVATLPPEQMFE 543
+ PE K PPE+ E
Sbjct: 124 DKDTSIPETDEK---VSPPEKKLE 144
Score = 54.0 bits (124), Expect = 7e-08
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+ + N+P++A +K +FS VG V + + ETG PKG+ F ++ ++ A +A++
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKF 392
Query: 352 NGYEIGGRSLRVDNACTE---KSRMEMQALMQGPQVENPYGDPVEPEKAPEAISKAVATL 522
NG+ G R + VD A + + E GD E + +AV +
Sbjct: 393 NGHMFGKRPIAVDWAVPKNIYNGAADATTASADGDKEGSDGDSENSSVDLEEVDEAVESH 452
Query: 523 PP 528
PP
Sbjct: 453 PP 454
Score = 51.6 bits (118), Expect = 4e-07
Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
Frame = +1
Query: 133 KEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEY 312
KE Q D R++F+ N+P++ T+E++K F+ G V S LV + T +P+G F ++
Sbjct: 551 KETQD-NDDFERTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKF 609
Query: 313 KDQETALSAMRNLN-----GYEIGGRSLRVDNACTEKSRMEMQ 426
K + +++A+ + G + GR L V A +K+ +++
Sbjct: 610 KTADASVAAISAADTASGVGVLLKGRQLNVMRAVGKKAAKDIE 652
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 62.1 bits (144), Expect = 3e-10
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEV-GPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
+VFVG++ + T+ L + F V V K+V DR TG+ KGYGF + D+ + AM
Sbjct: 174 TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMT 233
Query: 346 NLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVENPYGDPVEPEKAPEAISKAV 513
+NG R +R A +K A Q Q + DP A+ ++V
Sbjct: 234 EMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSV 289
Score = 46.4 bits (105), Expect = 1e-05
Identities = 25/78 (32%), Positives = 44/78 (56%)
Frame = +1
Query: 154 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 333
D + ++FVG + TE+ LK +F + G ++ K+ G K GF +Y ++ A
Sbjct: 274 DPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKI----PAG--KRCGFVQYANRACAE 327
Query: 334 SAMRNLNGYEIGGRSLRV 387
A+ LNG ++GG+S+R+
Sbjct: 328 QALSVLNGTQLGGQSIRL 345
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 62.1 bits (144), Expect = 3e-10
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGP-VLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
S+FVG++ + ++ L + FSE P V + K+V D TG+ KGYGF + D+ AM
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 346 NLNGYEIGGRSLRVDNACTEKSR--MEMQALMQGPQVENPYGD 468
+NG + R++R+ A K+ + M + P GD
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGD 300
Score = 41.1 bits (92), Expect = 5e-04
Identities = 19/81 (23%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = +1
Query: 121 KSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFS--EVGPVLSFKLVFDRETGKPKG 294
+S+ + Q+ + ++++VG++ + E L F+ + ++S K++ ++ G +G
Sbjct: 86 QSRGNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEG 145
Query: 295 YGFCEYKDQETALSAMRNLNG 357
YGF E++ + A +R NG
Sbjct: 146 YGFVEFESHDVADKVLREFNG 166
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 62.1 bits (144), Expect = 3e-10
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGP-VLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
S+FVG++ + ++ L + FSE P V + K+V D TG+ KGYGF + D+ AM
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 346 NLNGYEIGGRSLRVDNACTEKSR--MEMQALMQGPQVENPYGD 468
+NG + R++R+ A K+ + M + P GD
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGD 300
Score = 44.8 bits (101), Expect = 4e-05
Identities = 24/73 (32%), Positives = 41/73 (56%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
++FVG + T+E LK F+E G ++S K+ KG GF ++ ++ A A+
Sbjct: 305 TIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEK 358
Query: 349 LNGYEIGGRSLRV 387
LNG IG +++R+
Sbjct: 359 LNGTVIGKQTVRL 371
Score = 41.1 bits (92), Expect = 5e-04
Identities = 19/81 (23%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = +1
Query: 121 KSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFS--EVGPVLSFKLVFDRETGKPKG 294
+S+ + Q+ + ++++VG++ + E L F+ + ++S K++ ++ G +G
Sbjct: 86 QSRGNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEG 145
Query: 295 YGFCEYKDQETALSAMRNLNG 357
YGF E++ + A +R NG
Sbjct: 146 YGFVEFESHDVADKVLREFNG 166
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 61.7 bits (143), Expect = 3e-10
Identities = 29/80 (36%), Positives = 49/80 (61%)
Frame = +1
Query: 157 KSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALS 336
+S R+++VGN+P + E +++D+FS+ GPV+ L + +P GY F E++D A
Sbjct: 4 RSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADD 60
Query: 337 AMRNLNGYEIGGRSLRVDNA 396
A+ +GY+ G LRV+ A
Sbjct: 61 AIYGRDGYDFDGHHLRVELA 80
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 61.7 bits (143), Expect = 3e-10
Identities = 29/80 (36%), Positives = 49/80 (61%)
Frame = +1
Query: 157 KSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALS 336
+S R+++VGN+P + E +++D+FS+ GPV+ L + +P GY F E++D A
Sbjct: 4 RSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADD 60
Query: 337 AMRNLNGYEIGGRSLRVDNA 396
A+ +GY+ G LRV+ A
Sbjct: 61 AIYGRDGYDFDGHHLRVELA 80
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 61.3 bits (142), Expect = 4e-10
Identities = 27/73 (36%), Positives = 47/73 (64%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
++++G +P ++ L ++FS G ++ K++ DR TG KGYGF +Y D + A +A++
Sbjct: 481 NLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQA 540
Query: 349 LNGYEIGGRSLRV 387
+NGY GR+L V
Sbjct: 541 MNGYRFEGRTLAV 553
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 61.3 bits (142), Expect = 4e-10
Identities = 27/73 (36%), Positives = 47/73 (64%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
++++G +P ++ L ++FS G ++ K++ DR TG KGYGF +Y D + A +A++
Sbjct: 481 NLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQA 540
Query: 349 LNGYEIGGRSLRV 387
+NGY GR+L V
Sbjct: 541 MNGYRFEGRTLAV 553
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 61.3 bits (142), Expect = 4e-10
Identities = 29/87 (33%), Positives = 54/87 (62%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
+V+VG + + +EE L ++F + GPV++ + DR T + YGF EY+ +E A A++
Sbjct: 26 TVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKV 85
Query: 349 LNGYEIGGRSLRVDNACTEKSRMEMQA 429
LN ++ G+ +RV+ A +K +++ A
Sbjct: 86 LNMIKLHGKPIRVNKASQDKKSLDVGA 112
Score = 50.4 bits (115), Expect = 8e-07
Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Frame = +1
Query: 124 SKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSF-KLVFDRETGKPKGYG 300
+K +++ +D ++F+GN+ + E+ L D FS G + S K++ D +TG +G+G
Sbjct: 99 NKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFG 157
Query: 301 FCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRME 420
F Y E + +A+ ++ G + R + V A + ++ E
Sbjct: 158 FISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKGE 197
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 60.9 bits (141), Expect = 6e-10
Identities = 26/82 (31%), Positives = 46/82 (56%)
Frame = +1
Query: 154 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 333
D + +FVG + +E + ++ F + G ++ ++ D+ TG+ KGYGF +K+ E A+
Sbjct: 18 DTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAM 77
Query: 334 SAMRNLNGYEIGGRSLRVDNAC 399
A +N+N I GR + AC
Sbjct: 78 RACQNMNPV-IDGRRANCNLAC 98
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 60.5 bits (140), Expect = 8e-10
Identities = 26/80 (32%), Positives = 48/80 (60%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+F+G + + TE+ L + FS+ G V+ ++V DR + + KG+GF + + A A+
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEF 95
Query: 352 NGYEIGGRSLRVDNACTEKS 411
NG ++ GR++ VD A ++S
Sbjct: 96 NGQQLNGRTIFVDYAKAKQS 115
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 60.5 bits (140), Expect = 8e-10
Identities = 25/75 (33%), Positives = 46/75 (61%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+F+G + + E+ LKD FS G V ++ +D+ +G+ +G+GF ++ ++ ALSA +
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 352 NGYEIGGRSLRVDNA 396
+G + GR LR+ A
Sbjct: 103 DGKGLLGRPLRISFA 117
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 60.5 bits (140), Expect = 8e-10
Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 5/120 (4%)
Frame = +1
Query: 130 EKEEQSIMDKSMRS-VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFC 306
E+E S +K S +++ N+ +EKLK++FSE G V S K++ + + G +G+GF
Sbjct: 315 EQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFV 373
Query: 307 EYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRM-EMQAL---MQGPQVENPYGDPV 474
Y + E AL AM+ +NG IG + L V A ++ R +Q+L ++ P +P P+
Sbjct: 374 AYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPM 433
Score = 52.0 bits (119), Expect = 3e-07
Identities = 26/87 (29%), Positives = 47/87 (54%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
+VF+ N+ + L + FS G +LS K+ D G+ KGYGF +++ +ETA +A+
Sbjct: 133 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDK 191
Query: 349 LNGYEIGGRSLRVDNACTEKSRMEMQA 429
LNG + + + V + + R ++
Sbjct: 192 LNGMLLNDKQVFVGHFVRRQDRARSES 218
Score = 51.6 bits (118), Expect = 4e-07
Identities = 30/107 (28%), Positives = 55/107 (51%)
Frame = +1
Query: 100 HTIIKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRET 279
H + + D+++ +S S +V+V N+P E T+++LK F + G + S ++ D ++
Sbjct: 206 HFVRRQDRARS---ESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QS 261
Query: 280 GKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRME 420
G + +GF + E A A+ +NG +G L V A + R E
Sbjct: 262 GNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREE 308
Score = 43.6 bits (98), Expect = 9e-05
Identities = 23/73 (31%), Positives = 40/73 (54%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
S++VG++ E L D+F++V PV + ++ D T + GY + + + E A AM +
Sbjct: 46 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMES 104
Query: 349 LNGYEIGGRSLRV 387
LN I R +R+
Sbjct: 105 LNYAPIRDRPIRI 117
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 60.1 bits (139), Expect = 1e-09
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
R ++VGN+ + +E +L+ IF GPV +L D ETG+ KG+GF ++ E + +A
Sbjct: 265 RKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQI 324
Query: 346 NLNG-YEIGGRSLRVDN 393
LNG EI GR+++V +
Sbjct: 325 ALNGKLEIAGRTIKVSS 341
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 60.1 bits (139), Expect = 1e-09
Identities = 27/100 (27%), Positives = 52/100 (52%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
++V + + TE+ L+D F + G ++ +V D+ +PKG+ F Y+ +E A+ A++ +
Sbjct: 79 LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGM 138
Query: 352 NGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVENPYGDP 471
+G + GR + V+ A K+R +M P P
Sbjct: 139 HGKFLDGRVIFVEEA---KTRSDMSRAKPRRDFPKPQSKP 175
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 60.1 bits (139), Expect = 1e-09
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGP-VLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
S+FVG++ + ++ L + FSE P V + K+V D TG+ KGYGF + D+ AM
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 346 NLNGYEIGGRSLRVDNACTEKS 411
+NG + R++R+ A K+
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKT 281
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/73 (34%), Positives = 41/73 (56%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
++FVG + T+E LK FSE G ++S K+ KG GF ++ ++ A A+
Sbjct: 307 TIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEK 360
Query: 349 LNGYEIGGRSLRV 387
LNG IG +++R+
Sbjct: 361 LNGTVIGKQTVRL 373
Score = 41.1 bits (92), Expect = 5e-04
Identities = 19/81 (23%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +1
Query: 121 KSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFS--EVGPVLSFKLVFDRETGKPKG 294
+S+ + Q+ + ++++VG++ E L F+ E ++S K++ ++ G +G
Sbjct: 88 QSRGNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEG 147
Query: 295 YGFCEYKDQETALSAMRNLNG 357
YGF E++ + A ++ NG
Sbjct: 148 YGFVEFESHDVADKVLQEFNG 168
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 59.7 bits (138), Expect = 1e-09
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Frame = +1
Query: 130 EKEEQSIMDKSM-RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFC 306
E+E + +KS ++++ N+ +EKLK++FSE G V S K++ + + G +G+GF
Sbjct: 319 EQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFV 377
Query: 307 EYKDQETALSAMRNLNGYEIGGRSLRVDNA-CTEKSRMEMQALMQGPQVENPYGDPVEPE 483
Y + E AL A+ +NG IG + L + A E R +QAL + P P
Sbjct: 378 AYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIRAPGPMSGFHHPP 437
Query: 484 KAP 492
P
Sbjct: 438 GGP 440
Score = 50.8 bits (116), Expect = 6e-07
Identities = 25/82 (30%), Positives = 46/82 (56%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
++F+ N+ + L + FS G +LS K+ D TG+ KGYGF +++ +E+A +A+
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDK 195
Query: 349 LNGYEIGGRSLRVDNACTEKSR 414
LNG + + + V + + R
Sbjct: 196 LNGMLMNDKQVFVGHFIRRQER 217
Score = 50.0 bits (114), Expect = 1e-06
Identities = 27/84 (32%), Positives = 46/84 (54%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
+V+V N+P E E++L+ F + G V+S +V ++G + +GF ++ E A SA+
Sbjct: 230 NVYVKNLPKEIGEDELRKTFGKFG-VISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Query: 349 LNGYEIGGRSLRVDNACTEKSRME 420
+NG +G L V A + R E
Sbjct: 289 MNGISLGDDVLYVGRAQKKSEREE 312
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 59.7 bits (138), Expect = 1e-09
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
++F+ NIP E +++L F G VLS K+ D+ TG K +GF Y Q A +A+
Sbjct: 340 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINT 399
Query: 349 LNGYEIGGRSLRV----DNACTEKSRMEMQALMQG 441
+NG ++ G+ L+V DN ++ + L G
Sbjct: 400 MNGCQLSGKKLKVQLKRDNGQQQQQQQSKNPLFNG 434
Score = 43.2 bits (97), Expect = 1e-04
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Frame = +1
Query: 130 EKEEQSIMDKSMR---SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYG 300
E E ++D S +FVG +P +E +++ +FSE G + + + KG
Sbjct: 94 ELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQ-ILRGSLQTSKGCL 152
Query: 301 FCEYKDQETALSAMRNLNGYEI---GGRSLRVDNACTEKSRMEMQAL 432
F +Y+ +E A++AM LNG I L V A TEK R + L
Sbjct: 153 FLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEKERQARRLL 199
Score = 34.3 bits (75), Expect = 0.058
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Frame = +1
Query: 139 EQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGF--CEY 312
E+++ ++ +FVG +P TE +L +F E V ++ ++ T P+G F C
Sbjct: 3 EETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPT 62
Query: 313 K-DQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEM 423
+ D + +++ N L+V A E R+++
Sbjct: 63 REDADKVINSFHNKKTLPGASSPLQVKYADGELERLDV 100
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 59.7 bits (138), Expect = 1e-09
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
++F+ NIP E +++L F G VLS K+ D+ TG K +GF Y Q A +A+
Sbjct: 331 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINT 390
Query: 349 LNGYEIGGRSLRV----DNACTEKSRMEMQALMQG 441
+NG ++ G+ L+V DN ++ + L G
Sbjct: 391 MNGCQLSGKKLKVQLKRDNGQQQQQQQSKNPLFNG 425
Score = 43.2 bits (97), Expect = 1e-04
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Frame = +1
Query: 151 MDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETA 330
+++ +FVG +P +E +++ +FSE G + + + KG F +Y+ +E A
Sbjct: 95 LERLEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQ-ILRGSLQTSKGCLFLKYESKEQA 153
Query: 331 LSAMRNLNGYEI---GGRSLRVDNACTEKSRMEMQAL 432
++AM LNG I L V A TEK R + L
Sbjct: 154 VAAMEALNGRHIMEGANVPLIVKWADTEKERQARRLL 190
Score = 35.1 bits (77), Expect = 0.033
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Frame = +1
Query: 139 EQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGF--CEY 312
E+++ ++ +FVG +P TE +L +F E V ++ ++ T P+G F C
Sbjct: 3 EETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPT 62
Query: 313 K-DQETALSAMRNLNGYEIGGRSLRVDNACTEKSRME 420
+ D + +++ N L+V A E R+E
Sbjct: 63 REDADKVINSFHNKKTLPGASSPLQVKYADGELERLE 99
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 58.4 bits (135), Expect = 3e-09
Identities = 30/99 (30%), Positives = 50/99 (50%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+ + N+P +A L+D F GP+ L + TG+P+G+GF +Y+ E A AM+ +
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108
Query: 352 NGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVENPYGD 468
N IGGR + + E++R Q + +GD
Sbjct: 109 NHKVIGGREIAI--VFAEENRKTPQEMRTTNGTSGRHGD 145
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 58.4 bits (135), Expect = 3e-09
Identities = 24/66 (36%), Positives = 41/66 (62%)
Frame = +1
Query: 175 FVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLN 354
FVG + + +E L+ FS+ G V+ K++ DRE+G+ +G+GF +KD++ A+ +N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 355 GYEIGG 372
G GG
Sbjct: 69 GSGGGG 74
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 58.4 bits (135), Expect = 3e-09
Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Frame = +1
Query: 124 SKEKEEQSIMDKSM---RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKG 294
++ +E+ + +D S R V++GNIP T E+L + E G V ++++D+ +G+ +
Sbjct: 59 TETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRR 118
Query: 295 YGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEK 408
+GF K E A + + LNG + GR ++V+ TEK
Sbjct: 119 FGFATMKSVEDANAVVEKLNGNTVEGREIKVN--ITEK 154
Score = 55.6 bits (128), Expect = 2e-08
Identities = 32/93 (34%), Positives = 50/93 (53%)
Frame = +1
Query: 118 DKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGY 297
D S + E S S V+VGN+ T+E L+++FSE G V+S K+ T K G+
Sbjct: 161 DLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGF 220
Query: 298 GFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 396
GF + +E +A+ LN + G+ +RV+ A
Sbjct: 221 GFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 58.0 bits (134), Expect = 4e-09
Identities = 28/73 (38%), Positives = 43/73 (58%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
++F+ NIP E +++L F G VLS K+ D+ TG K +GF Y Q A +A+
Sbjct: 350 NLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDM 409
Query: 349 LNGYEIGGRSLRV 387
+NG +GG+ L+V
Sbjct: 410 MNGRHLGGKKLKV 422
Score = 44.8 bits (101), Expect = 4e-05
Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Frame = +1
Query: 151 MDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETA 330
+++ +FVG +P +E +++ +FS+ G + +++ + KG F +Y+ +E A
Sbjct: 101 LERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTS-KGCAFLKYETKEQA 159
Query: 331 LSAMRNLNG-YEIGGRS--LRVDNACTEKSRMEMQALMQGPQVEN-PYGDPVEP 480
+SAM ++NG +++ G + L V A TE+ R + + GDP P
Sbjct: 160 VSAMESINGKHKMEGSTVPLVVKWADTERERHTRRLQKAQSHIARLGNGDPTNP 213
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 57.6 bits (133), Expect = 5e-09
Identities = 23/75 (30%), Positives = 45/75 (60%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+FVG + E T+ L+ FS G +L +++ +R+TG+ +G+GF + D+ ++R +
Sbjct: 9 IFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREM 68
Query: 352 NGYEIGGRSLRVDNA 396
+G + G R + V+ A
Sbjct: 69 HGRDFGDRVISVNRA 83
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 57.6 bits (133), Expect = 5e-09
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Frame = +1
Query: 136 EEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGP-VLSFKLVFDRETGKPKGYGFCEY 312
E++++ + SVFVG++ + T+ L + FS+ P V S K+V D TG+ KGYGF +
Sbjct: 192 EKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRF 251
Query: 313 KDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQ 426
D+ A+ +NG R +RV A +++ Q
Sbjct: 252 GDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQ 289
Score = 47.2 bits (107), Expect = 8e-06
Identities = 27/82 (32%), Positives = 47/82 (57%)
Frame = +1
Query: 142 QSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQ 321
QS + + ++FVG I + +E L+ FS+ G V+S K+ KG GF ++ D+
Sbjct: 313 QSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVG------KGCGFVQFADR 366
Query: 322 ETALSAMRNLNGYEIGGRSLRV 387
++A A+ +LNG IG ++R+
Sbjct: 367 KSAEDAIESLNGTVIGKNTVRL 388
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 56.8 bits (131), Expect = 9e-09
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Frame = +1
Query: 109 IKMDKSKEKEEQSIMDKSMRS--VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETG 282
++ D +E +++ D + + +FV N+PY ATEE+L + FS G + LV D+ET
Sbjct: 240 VEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETK 299
Query: 283 KPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 387
+ +G + Y E A AM L+ GR L +
Sbjct: 300 RSRGIAYILYLIPECAARAMEELDNSSFQGRLLHI 334
Score = 49.6 bits (113), Expect = 1e-06
Identities = 30/97 (30%), Positives = 51/97 (52%)
Frame = +1
Query: 121 KSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYG 300
+S + + S DK + V NI +EAT+ +L+ +FS G + S +L + G+ GY
Sbjct: 654 RSDKVGKDSNKDKPCTKLHVKNIAFEATKRELRQLFSPFGQIKSMRLP-KKNIGQYAGYA 712
Query: 301 FCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKS 411
F E+ ++ AL+A + L GR L ++ A + S
Sbjct: 713 FVEFVTKQEALNAKKALASTHFYGRHLVLEWANDDNS 749
Score = 43.6 bits (98), Expect = 9e-05
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Frame = +1
Query: 178 VGNIPYEATEEKLKDIFSEV---GPVLSFKLVFDRETGK--PKGYGFCEYKDQETALSAM 342
V N+ ++ T+E LK F+++ G +LS ++ ++ K GYGF E+ ETA S
Sbjct: 573 VKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATSVY 632
Query: 343 RNLNGYEIGGRSL 381
R+L G + G +L
Sbjct: 633 RDLQGTVLDGHAL 645
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 56.8 bits (131), Expect = 9e-09
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Frame = +1
Query: 154 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 333
D + VFVG + +E ++++ F + G +L ++ D+ TGK KGYGF +++ ++A
Sbjct: 13 DTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSAT 72
Query: 334 SAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVENPYGDPVEPEK-APEAISKA 510
A+ + N I GR + A + R P+ G P + + P +
Sbjct: 73 RAVADPNPV-IDGRKANCNIASFGRPR------PSPPRGRGQTGSPSQYQSGGPSTYTGM 125
Query: 511 VATLPPEQMFELM 549
A LPP +LM
Sbjct: 126 AAPLPPAAAPQLM 138
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 56.8 bits (131), Expect = 9e-09
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Frame = +1
Query: 154 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 333
D + VFVG + +E ++++ F + G +L ++ D+ TGK KGYGF +++ ++A
Sbjct: 13 DTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSAT 72
Query: 334 SAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVENPYGDPVEPEK-APEAISKA 510
A+ + N I GR + A + R P+ G P + + P +
Sbjct: 73 RAVADPNPV-IDGRKANCNIASFGRPR------PSPPRGRGQTGSPSQYQSGGPSTYTGM 125
Query: 511 VATLPPEQMFELM 549
A LPP +LM
Sbjct: 126 AAPLPPAAAPQLM 138
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 56.8 bits (131), Expect = 9e-09
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
S+ V N+ ++ +E L+ F + GPV L D TG P+G+GF ++ D A A +
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96
Query: 349 LNGYEIGGRSLRVDNA-CTEKSRMEMQALMQG 441
++GY + GR L V A K EM+A +G
Sbjct: 97 MDGYLLLGRELTVVFAEENRKKPTEMRARERG 128
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 56.8 bits (131), Expect = 9e-09
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGP-VLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
++FVG++ + T+ L + F P V K+V DR TG+ KGYGF + D+ + AM
Sbjct: 156 TIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMT 215
Query: 346 NLNGYEIGGRSLRVDNACTEK 408
+NG R +R+ A ++K
Sbjct: 216 EMNGVPCSTRPMRIGPAASKK 236
Score = 48.8 bits (111), Expect = 2e-06
Identities = 25/78 (32%), Positives = 46/78 (58%)
Frame = +1
Query: 154 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 333
D + +VFVG + T++ LK++FS+ G ++ K+ G K GF ++ ++ A
Sbjct: 257 DPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKI----PAG--KRCGFVQFSEKSCAE 310
Query: 334 SAMRNLNGYEIGGRSLRV 387
A+R LNG ++GG ++R+
Sbjct: 311 EALRMLNGVQLGGTTVRL 328
Score = 45.2 bits (102), Expect = 3e-05
Identities = 19/68 (27%), Positives = 39/68 (57%)
Frame = +1
Query: 163 MRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAM 342
+R++++G++ Y E L F+ G ++S K++ +++TG+ +GYGF E+ A +
Sbjct: 61 IRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVL 120
Query: 343 RNLNGYEI 366
+ N I
Sbjct: 121 QTFNNAPI 128
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 56.8 bits (131), Expect = 9e-09
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGP-VLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
++FVG++ + T+ L + F P V K+V DR TG+ KGYGF + D+ + AM
Sbjct: 156 TIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMT 215
Query: 346 NLNGYEIGGRSLRVDNACTEK 408
+NG R +R+ A ++K
Sbjct: 216 EMNGVPCSTRPMRIGPAASKK 236
Score = 45.2 bits (102), Expect = 3e-05
Identities = 19/68 (27%), Positives = 39/68 (57%)
Frame = +1
Query: 163 MRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAM 342
+R++++G++ Y E L F+ G ++S K++ +++TG+ +GYGF E+ A +
Sbjct: 61 IRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVL 120
Query: 343 RNLNGYEI 366
+ N I
Sbjct: 121 QTFNNAPI 128
Score = 32.7 bits (71), Expect = 0.18
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 154 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETG 282
D + +VFVG + T++ LK++FS+ G ++ K+ + G
Sbjct: 257 DPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 56.4 bits (130), Expect = 1e-08
Identities = 24/70 (34%), Positives = 42/70 (60%)
Frame = +1
Query: 139 EQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKD 318
E + D S R++FV + ++ T E LK F G + +V D++TG+ KG+GF +K
Sbjct: 154 ESADRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKT 213
Query: 319 QETALSAMRN 348
++ A +A++N
Sbjct: 214 RKGARAALKN 223
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 56.0 bits (129), Expect = 2e-08
Identities = 29/86 (33%), Positives = 46/86 (53%)
Frame = +1
Query: 130 EKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCE 309
E E S + S+ S+FV +E +LK +FSE G V + K++ + T + GYG+
Sbjct: 65 ETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVW 124
Query: 310 YKDQETALSAMRNLNGYEIGGRSLRV 387
+ +E A SA+ +NG GR + V
Sbjct: 125 FNSKEDAQSAVEAMNGKFFDGRFILV 150
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/77 (28%), Positives = 45/77 (58%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
+ +FVG +P T+E+ + F GPV +++D+ T +P+G+GF + D E A+ ++
Sbjct: 110 KKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSF-DSEDAVDSVL 168
Query: 346 NLNGYEIGGRSLRVDNA 396
+ +++ G+ + V A
Sbjct: 169 HKTFHDLSGKQVEVKRA 185
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/56 (37%), Positives = 34/56 (60%)
Frame = +1
Query: 151 MDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKD 318
MD +FVG I +E E+KL++ F+ G V ++ D+ TG+P+G+GF + D
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSD 56
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 56.0 bits (129), Expect = 2e-08
Identities = 28/95 (29%), Positives = 55/95 (57%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+FV + T++ L+ +FS G + +L+ D ET +PKG+GF + ++ A A+++L
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 352 NGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVEN 456
+G + GR + V+ A K+ E++A + + E+
Sbjct: 69 DGKIVDGRLIFVEVA---KNAEEVRAGINSNKAED 100
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 56.0 bits (129), Expect = 2e-08
Identities = 21/74 (28%), Positives = 46/74 (62%)
Frame = +1
Query: 175 FVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLN 354
F+G + + ++ L+D F + G ++ K+V D+ +G+ +G+GF + +++ A+ +N
Sbjct: 10 FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMN 69
Query: 355 GYEIGGRSLRVDNA 396
G ++ GR++ VD A
Sbjct: 70 GMDLDGRTITVDKA 83
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 56.0 bits (129), Expect = 2e-08
Identities = 26/97 (26%), Positives = 53/97 (54%)
Frame = +1
Query: 124 SKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGF 303
S+++++ + +F+ + + +E+ L+ F G ++ K++ D+ + + KGY F
Sbjct: 268 SRDQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF 327
Query: 304 CEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSR 414
EY +E A +A++ +NG I G + VD A T+ R
Sbjct: 328 LEYTTEEAAGTALKEMNGKIINGWMIVVDVAKTKPFR 364
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 56.0 bits (129), Expect = 2e-08
Identities = 30/75 (40%), Positives = 47/75 (62%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
RSV+VGNI + TE L++IF+ GPV S KL+ ++ YGF Y D+ +A A+
Sbjct: 59 RSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKS----SYGFVHYFDRRSAALAIL 114
Query: 346 NLNGYEIGGRSLRVD 390
+LNG + G+ ++V+
Sbjct: 115 SLNGRHLFGQPIKVN 129
Score = 52.4 bits (120), Expect = 2e-07
Identities = 21/72 (29%), Positives = 44/72 (61%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
++FVG++ E T+ L FS ++++D++TG+ +G+GF +++Q+ A +A+
Sbjct: 145 NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 204
Query: 349 LNGYEIGGRSLR 384
+NG + R +R
Sbjct: 205 MNGKWLSSRQIR 216
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 56.0 bits (129), Expect = 2e-08
Identities = 31/91 (34%), Positives = 46/91 (50%)
Frame = +1
Query: 154 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 333
D + VFVG + +E E L+ F + G +L ++ D+ TG+ KGYGF ++D E A
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 79
Query: 334 SAMRNLNGYEIGGRSLRVDNACTEKSRMEMQ 426
A + I GR + A +SR MQ
Sbjct: 80 RACVDPTPI-IDGRRANCNLASLGRSRPPMQ 109
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 55.6 bits (128), Expect = 2e-08
Identities = 30/99 (30%), Positives = 47/99 (47%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
S+ V NIP + E+L++ F GPV + D +G+P+G+ F E+ D A A R+
Sbjct: 48 SLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRS 107
Query: 349 LNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVENPYG 465
+N GR + V A + R E + + P G
Sbjct: 108 MNRRSFAGREITVVVASESRKRPEEMRVKTRTRSREPSG 146
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 55.6 bits (128), Expect = 2e-08
Identities = 25/86 (29%), Positives = 46/86 (53%)
Frame = +1
Query: 154 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 333
D + +FVG IP TE++LKD F++ G V+ +++ D ET + +G+GF + +E
Sbjct: 105 DIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVD 164
Query: 334 SAMRNLNGYEIGGRSLRVDNACTEKS 411
+ N ++ + + A +KS
Sbjct: 165 ELLSKGNMIDMADTQVEIKKAEPKKS 190
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +1
Query: 121 KSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYG 300
+S+ QS S +F+G + + T F + G + ++ DR TG+P+G+G
Sbjct: 4 RSRNDNFQSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFG 63
Query: 301 FCEYKD 318
F + D
Sbjct: 64 FITFAD 69
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 55.2 bits (127), Expect = 3e-08
Identities = 23/67 (34%), Positives = 39/67 (58%)
Frame = +1
Query: 154 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 333
D + ++VG +P+ +E L + F G ++ +V DRET + +GYGF +KD E+A
Sbjct: 9 DTTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESAT 68
Query: 334 SAMRNLN 354
A ++ N
Sbjct: 69 RACKDPN 75
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 55.2 bits (127), Expect = 3e-08
Identities = 23/75 (30%), Positives = 45/75 (60%)
Frame = +1
Query: 157 KSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALS 336
+ +R++++G++ Y E L FS+ G ++S K++ ++ TG+P+GYGF E+ A
Sbjct: 21 EEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAER 80
Query: 337 AMRNLNGYEIGGRSL 381
++ NG ++ G L
Sbjct: 81 TLQTYNGTQMPGTEL 95
Score = 51.2 bits (117), Expect = 5e-07
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFS-EVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
S+FVG++ + T+ L++ F V K+V D TG+ KGYGF ++ ++ AM
Sbjct: 117 SIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
Query: 346 NLNGYEIGGRSLRVDNACTEKSRMEMQ 426
+NG R +R+ +A T K + +Q
Sbjct: 177 EMNGLYCSTRPMRI-SAATPKKNVGVQ 202
Score = 47.6 bits (108), Expect = 6e-06
Identities = 24/78 (30%), Positives = 45/78 (57%)
Frame = +1
Query: 154 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 333
D + ++ V N+ TEE+LK FS++G V+ K+ KGYG+ ++K + +A
Sbjct: 233 DVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKI------PATKGYGYVQFKTRPSAE 286
Query: 334 SAMRNLNGYEIGGRSLRV 387
A++ + G IG +++R+
Sbjct: 287 EAVQRMQGQVIGQQAVRI 304
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 55.2 bits (127), Expect = 3e-08
Identities = 22/72 (30%), Positives = 45/72 (62%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
++FVG++ E T+ L D FS ++++D++TG+ +G+GF +++Q+ A +A+
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 208
Query: 349 LNGYEIGGRSLR 384
+NG + R +R
Sbjct: 209 MNGKWVSSRQIR 220
Score = 53.2 bits (122), Expect = 1e-07
Identities = 29/75 (38%), Positives = 44/75 (58%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
RSV+ GNI + TE L++IF+ GP+ S KL+ ++ YGF Y D+ A A+
Sbjct: 63 RSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKS----SYGFVHYFDRRCASMAIM 118
Query: 346 NLNGYEIGGRSLRVD 390
LNG I G+ ++V+
Sbjct: 119 TLNGRHIFGQPMKVN 133
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 55.2 bits (127), Expect = 3e-08
Identities = 31/83 (37%), Positives = 49/83 (59%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
RSV+VGNI + TE L+++F+ GPV S KL+ ++ YGF Y D+ +A A+
Sbjct: 54 RSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKS----SYGFVHYFDRRSAGLAIL 109
Query: 346 NLNGYEIGGRSLRVDNACTEKSR 414
+LNG + G+ ++V+ A R
Sbjct: 110 SLNGRHLFGQPIKVNWAYASGQR 132
Score = 50.4 bits (115), Expect = 8e-07
Identities = 21/72 (29%), Positives = 44/72 (61%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
++FVG++ E T+ L FS ++++D++TG+ +G+GF +++Q+ A +A+
Sbjct: 140 NIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDE 199
Query: 349 LNGYEIGGRSLR 384
+ G +G R +R
Sbjct: 200 ITGKWLGSRQIR 211
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 54.8 bits (126), Expect = 4e-08
Identities = 25/81 (30%), Positives = 46/81 (56%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
S++VG++ + T+ +L D F+EV V+S ++ D T GYG+ Y + + A AM+
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 349 LNGYEIGGRSLRVDNACTEKS 411
LN + G+ +R+ + + S
Sbjct: 107 LNYSYLNGKMIRITYSSRDSS 127
Score = 51.6 bits (118), Expect = 4e-07
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
+++V N+ T+EKL+++F+E G + S K++ D +G KG GF + A +
Sbjct: 329 NLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRD-PSGTSKGSGFVAFSAASEASRVLNE 387
Query: 349 LNGYEIGGRSLRVDNA-CTEKSRMEMQA 429
+NG +GG+ L V A E+ R ++QA
Sbjct: 388 MNGKMVGGKPLYVALAQRKEERRAKLQA 415
Score = 48.4 bits (110), Expect = 3e-06
Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Frame = +1
Query: 127 KEKEEQSIMDK-SMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGF 303
+++E +S DK +V+V N+ T+++LK F + G + S ++ D + GK + +GF
Sbjct: 211 RKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGD-GKSRCFGF 269
Query: 304 CEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQ 426
+++ E A A+ LNG + + V A +KS E++
Sbjct: 270 VNFENPEDAARAVEALNGKKFDDKEWYVGKA-QKKSERELE 309
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/83 (26%), Positives = 44/83 (53%)
Frame = +1
Query: 139 EQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKD 318
+ S + ++FV N+ + L + FS G ++S K+ D G+ +GYGF ++
Sbjct: 125 DSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDH-MGQSRGYGFVQFDT 183
Query: 319 QETALSAMRNLNGYEIGGRSLRV 387
+++A +A+ LNG + + + V
Sbjct: 184 EDSAKNAIEKLNGKVLNDKQIFV 206
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 54.8 bits (126), Expect = 4e-08
Identities = 27/87 (31%), Positives = 47/87 (54%)
Frame = +1
Query: 154 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 333
D + VFVG + +E ++++ F + G +L ++ D+ TGK KGYGF ++D ++A
Sbjct: 13 DTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSAT 72
Query: 334 SAMRNLNGYEIGGRSLRVDNACTEKSR 414
A+ + N I GR + A + R
Sbjct: 73 RAVADPNPV-IDGRKANCNIASFGRPR 98
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 54.4 bits (125), Expect = 5e-08
Identities = 31/106 (29%), Positives = 52/106 (49%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+ V N+P+ +E+ LK FS G + KL+ D + KGY F ++ Q+ A A+ +
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETM 101
Query: 352 NGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVENPYGDPVEPEKA 489
+ GR + +D A + + + Q L P+ P EPE+A
Sbjct: 102 DRRMYNGRMIYIDIA--KPGKRDFQGL---PRTSGPPEKSDEPEEA 142
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 54.4 bits (125), Expect = 5e-08
Identities = 26/73 (35%), Positives = 40/73 (54%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
S+ V N+ ++ +E L+ F + GPV L D TG P+G+GF ++ D A A
Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQ 97
Query: 349 LNGYEIGGRSLRV 387
++GY + GR L V
Sbjct: 98 MDGYLLLGRELTV 110
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 54.4 bits (125), Expect = 5e-08
Identities = 25/74 (33%), Positives = 44/74 (59%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
++FVG + + TE+ L+++ S+ G + + +LV TG +GYGF EY+ ++ L A +
Sbjct: 65 TLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYED 124
Query: 349 LNGYEIGGRSLRVD 390
+ I GR + VD
Sbjct: 125 AHHSLIDGREIIVD 138
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 54.4 bits (125), Expect = 5e-08
Identities = 29/97 (29%), Positives = 49/97 (50%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+FV + T EKL+D F+ G ++ +++ DR++G+ KG+GF Y E A A +
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95
Query: 352 NGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVENPY 462
N + G + VD A + R +Q P E+ +
Sbjct: 96 NAKFLDGWVIFVDPARPREPRRPLQQEPLRPSSESGF 132
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 54.0 bits (124), Expect = 7e-08
Identities = 22/77 (28%), Positives = 44/77 (57%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
+ +FVG +P TEE+ K+ F + G + +++D T +P+G+GF + D + A+ +
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAVDRVL 168
Query: 346 NLNGYEIGGRSLRVDNA 396
+ +E+ G+ + V A
Sbjct: 169 HKTFHELNGKLVEVKRA 185
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/82 (30%), Positives = 46/82 (56%)
Frame = +1
Query: 151 MDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETA 330
M+ + +F+G I ++ EE+L+D FS G V+ ++ DR TG+ +G+GF + D
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFAD--PC 58
Query: 331 LSAMRNLNGYEIGGRSLRVDNA 396
+S ++ + I GR++ A
Sbjct: 59 VSERVIMDKHIIDGRTVEAKKA 80
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 54.0 bits (124), Expect = 7e-08
Identities = 22/77 (28%), Positives = 44/77 (57%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
+ +FVG +P TEE+ K+ F + G + +++D T +P+G+GF + D + A+ +
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAVDRVL 168
Query: 346 NLNGYEIGGRSLRVDNA 396
+ +E+ G+ + V A
Sbjct: 169 HKTFHELNGKLVEVKRA 185
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/82 (30%), Positives = 46/82 (56%)
Frame = +1
Query: 151 MDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETA 330
M+ + +F+G I ++ EE+L+D FS G V+ ++ DR TG+ +G+GF + D
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFAD--PC 58
Query: 331 LSAMRNLNGYEIGGRSLRVDNA 396
+S ++ + I GR++ A
Sbjct: 59 VSERVIMDKHIIDGRTVEAKKA 80
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 54.0 bits (124), Expect = 7e-08
Identities = 22/77 (28%), Positives = 44/77 (57%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
+ +FVG +P TEE+ K+ F + G + +++D T +P+G+GF + D + A+ +
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAVDRVL 168
Query: 346 NLNGYEIGGRSLRVDNA 396
+ +E+ G+ + V A
Sbjct: 169 HKTFHELNGKLVEVKRA 185
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/82 (30%), Positives = 46/82 (56%)
Frame = +1
Query: 151 MDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETA 330
M+ + +F+G I ++ EE+L+D FS G V+ ++ DR TG+ +G+GF + D
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFAD--PC 58
Query: 331 LSAMRNLNGYEIGGRSLRVDNA 396
+S ++ + I GR++ A
Sbjct: 59 VSERVIMDKHIIDGRTVEAKKA 80
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 54.0 bits (124), Expect = 7e-08
Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Frame = +1
Query: 127 KEKEEQSIMDKS-MRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGF 303
+ +E S +K+ +V+V N+ T++ LK+ F E G + S ++ D E GK KG+GF
Sbjct: 15 RRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGF 73
Query: 304 CEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQ 426
+++ + A A+ +LNG++ + V A +KS E +
Sbjct: 74 VNFENADDAARAVESLNGHKFDDKEWYVGRA-QKKSERETE 113
Score = 50.0 bits (114), Expect = 1e-06
Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Frame = +1
Query: 130 EKEEQSIMDKSMRS-VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFC 306
E+ + DK S ++V N+ ++EKLK+IFS G V S K++ D G KG GF
Sbjct: 119 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFV 177
Query: 307 EYKDQETALSAMRNLNGYEIGGRSLRVDNA-CTEKSRMEMQA 429
+ E A AM L+G I + L V A E R+ +QA
Sbjct: 178 AFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQA 219
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 54.0 bits (124), Expect = 7e-08
Identities = 23/62 (37%), Positives = 35/62 (56%)
Frame = +1
Query: 154 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 333
D + VFVG + +E E L+ F + G +L ++ D+ TG+ KGYGF ++D E A
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAAR 79
Query: 334 SA 339
A
Sbjct: 80 RA 81
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 53.2 bits (122), Expect = 1e-07
Identities = 28/74 (37%), Positives = 44/74 (59%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
RSVFVGN+ Y T E+++ F G V ++ D+ G+PKG+ + E+ + E A++
Sbjct: 92 RSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDK-FGQPKGFAYVEFVEVEAVQEALQ 150
Query: 346 NLNGYEIGGRSLRV 387
LN E+ GR L+V
Sbjct: 151 -LNESELHGRQLKV 163
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 53.2 bits (122), Expect = 1e-07
Identities = 26/76 (34%), Positives = 42/76 (55%)
Frame = +1
Query: 130 EKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCE 309
E E S + S+ S+FV +E +LK +FSE G V + K++ + T + GYG+
Sbjct: 46 ETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVW 105
Query: 310 YKDQETALSAMRNLNG 357
+ +E A SA+ +NG
Sbjct: 106 FNSKEDAQSAVEAMNG 121
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 53.2 bits (122), Expect = 1e-07
Identities = 23/69 (33%), Positives = 40/69 (57%)
Frame = +1
Query: 139 EQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKD 318
E + D + R++FV ++ T+E LK F G + +V D++TG+ KGYGF +K
Sbjct: 399 ESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKT 458
Query: 319 QETALSAMR 345
++ A A++
Sbjct: 459 RKGAREALK 467
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 53.2 bits (122), Expect = 1e-07
Identities = 29/75 (38%), Positives = 44/75 (58%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
RSV+ GNI + TE L++IF+ GP+ S KL+ ++ YGF Y D+ A A+
Sbjct: 63 RSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKS----SYGFVHYFDRRCASMAIM 118
Query: 346 NLNGYEIGGRSLRVD 390
LNG I G+ ++V+
Sbjct: 119 TLNGRHIFGQPMKVN 133
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/76 (30%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSF----KLVFDRETGKPKGYGFCEYKDQETALS 336
++FVG++ E T+ L D FS S+ ++++D++TG+ +G+GF +++Q+ A +
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQT 208
Query: 337 AMRNLNGYEIGGRSLR 384
A+ +NG + R +R
Sbjct: 209 AINEMNGKWVSSRQIR 224
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 53.2 bits (122), Expect = 1e-07
Identities = 26/83 (31%), Positives = 44/83 (53%)
Frame = +1
Query: 139 EQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKD 318
+ S+ + ++F+ N+ + L + FS GP+LS K+ D +G+ KGYGF +Y
Sbjct: 124 DPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDT 182
Query: 319 QETALSAMRNLNGYEIGGRSLRV 387
E A A+ LNG + + + V
Sbjct: 183 DEAAQGAIDKLNGMLLNDKQVYV 205
Score = 51.2 bits (117), Expect = 5e-07
Identities = 23/73 (31%), Positives = 42/73 (57%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
S++VG++ T+ +L + F++ G V+S ++ D T + GYG+ Y + A A+
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 349 LNGYEIGGRSLRV 387
LN + GR++RV
Sbjct: 106 LNFMALNGRAIRV 118
Score = 45.2 bits (102), Expect = 3e-05
Identities = 27/86 (31%), Positives = 45/86 (52%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
+V+V N+ ++E+L +F E G S ++ D E GK KG+GF +++ + A A+
Sbjct: 225 NVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDA 283
Query: 349 LNGYEIGGRSLRVDNACTEKSRMEMQ 426
LNG + V A +KS E +
Sbjct: 284 LNGKTFDDKEWFVGKA-QKKSERETE 308
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Frame = +1
Query: 142 QSIMDKSMRS---VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEY 312
Q D+++R+ V++GN+ + TEE+L ++FS G + + D+ T P G+ F +
Sbjct: 23 QEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLF 82
Query: 313 KDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVENPYGDPVEPEK 486
+E A++ ++G + R +RVD + + G QV + Y +P +
Sbjct: 83 YSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWGRGRSGGQVRDEYRTDYDPAR 140
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 52.8 bits (121), Expect = 2e-07
Identities = 21/57 (36%), Positives = 36/57 (63%)
Frame = +1
Query: 154 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQE 324
D + +FVG IP TE++LKD F++ G V+ +++ D ET + +G+GF + +E
Sbjct: 105 DIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEE 161
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +1
Query: 121 KSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYG 300
+S+ QS S +F+G + + T F + G + ++ DR TG+P+G+G
Sbjct: 4 RSRNDNFQSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFG 63
Query: 301 FCEYKD 318
F + D
Sbjct: 64 FITFAD 69
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/66 (37%), Positives = 37/66 (56%)
Frame = +1
Query: 151 MDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETA 330
MD +FVG I E +EE LK FS G VL + ++ TGKP+G+GF + +
Sbjct: 1 MDYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDV 60
Query: 331 LSAMRN 348
+ A+R+
Sbjct: 61 VKALRD 66
Score = 48.0 bits (109), Expect = 4e-06
Identities = 22/77 (28%), Positives = 38/77 (49%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
+ +FVG + TEE+ K F G ++ D T +P+G+GF Y D E ++ +
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTY-DSEDSVEVVM 178
Query: 346 NLNGYEIGGRSLRVDNA 396
N +E+ + + V A
Sbjct: 179 QSNFHELSDKRVEVKRA 195
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/75 (34%), Positives = 40/75 (53%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+FVG + E LK+ F G ++ +V DRE+G +G+GF Y E A +AM+ +
Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAM 97
Query: 352 NGYEIGGRSLRVDNA 396
E+ GR + V A
Sbjct: 98 QNKELDGRIIGVHPA 112
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 52.4 bits (120), Expect = 2e-07
Identities = 22/100 (22%), Positives = 50/100 (50%)
Frame = +1
Query: 109 IKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKP 288
+++ ++ + S D + +FVG IP +++ K+ F + G + +++ D TG+
Sbjct: 111 VEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRS 170
Query: 289 KGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEK 408
+G+GF Y+ ++ + N E+ G + + A +K
Sbjct: 171 RGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKK 210
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +1
Query: 109 IKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKP 288
I+ D K + S +FVG + E T + F + G + ++ DR+TG+P
Sbjct: 23 IEDDDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQP 82
Query: 289 KGYGFCEYKD 318
+G+GF Y D
Sbjct: 83 RGFGFVTYAD 92
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/72 (33%), Positives = 42/72 (58%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
V+VGN+ T++ L++ FS G V+ ++ DR T + +G+GF Y A +A+ +
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 352 NGYEIGGRSLRV 387
+G E+ GR + V
Sbjct: 65 DGKELNGRRVSV 76
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 52.4 bits (120), Expect = 2e-07
Identities = 27/78 (34%), Positives = 46/78 (58%)
Frame = +1
Query: 154 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 333
D S R++FV N+ + AT++ L F++ G VL +V D TG+P G + E+ +E A
Sbjct: 512 DASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAE 571
Query: 334 SAMRNLNGYEIGGRSLRV 387
+A+ +L+G R L++
Sbjct: 572 NAL-SLDGTSFMSRILKI 588
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/77 (31%), Positives = 39/77 (50%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
R +FVG +P TE K F + G +++D T +P+G+GF Y D E A+ +
Sbjct: 108 RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITY-DSEEAVEKVL 166
Query: 346 NLNGYEIGGRSLRVDNA 396
+E+ G+ + V A
Sbjct: 167 LKTFHELNGKMVEVKRA 183
Score = 50.8 bits (116), Expect = 6e-07
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Frame = +1
Query: 151 MDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKD---Q 321
M +F+G I ++ EE+LK+ FS G V+ ++ DR TG+ +G+GF + D
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60
Query: 322 ETALSAMRNLNG 357
E ++ N++G
Sbjct: 61 EIVITEKHNIDG 72
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/77 (31%), Positives = 39/77 (50%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
R +FVG +P TE K F + G +++D T +P+G+GF Y D E A+ +
Sbjct: 108 RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITY-DSEEAVEKVL 166
Query: 346 NLNGYEIGGRSLRVDNA 396
+E+ G+ + V A
Sbjct: 167 LKTFHELNGKMVEVKRA 183
Score = 50.8 bits (116), Expect = 6e-07
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Frame = +1
Query: 151 MDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKD---Q 321
M +F+G I ++ EE+LK+ FS G V+ ++ DR TG+ +G+GF + D
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60
Query: 322 ETALSAMRNLNG 357
E ++ N++G
Sbjct: 61 EIVITEKHNIDG 72
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 52.4 bits (120), Expect = 2e-07
Identities = 25/80 (31%), Positives = 42/80 (52%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
++FV I + +TEE L FS+ G VL ++ D+ +PKG+ + + +E A A+
Sbjct: 22 TLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLE 81
Query: 349 LNGYEIGGRSLRVDNACTEK 408
LN + GR + +D K
Sbjct: 82 LNAQLVDGRVVILDTTKAAK 101
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/69 (34%), Positives = 39/69 (56%)
Frame = +1
Query: 139 EQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKD 318
E + D + R +FV +P+E T E L +F G + +V D+ TGK KG+GF +K
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
Query: 319 QETALSAMR 345
++ A A++
Sbjct: 155 RKGAKEALK 163
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/69 (34%), Positives = 39/69 (56%)
Frame = +1
Query: 139 EQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKD 318
E + D + R +FV +P+E T E L +F G + +V D+ TGK KG+GF +K
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
Query: 319 QETALSAMR 345
++ A A++
Sbjct: 155 RKGAKEALK 163
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 52.4 bits (120), Expect = 2e-07
Identities = 23/80 (28%), Positives = 47/80 (58%)
Frame = +1
Query: 175 FVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLN 354
FV + + E+ L DIFS+ G V+ K+++DR+TGK + +GF ++++++ A+ ++
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69
Query: 355 GYEIGGRSLRVDNACTEKSR 414
E + + V + E +R
Sbjct: 70 VEESRSKCVNVGSITVEVAR 89
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 52.4 bits (120), Expect = 2e-07
Identities = 25/77 (32%), Positives = 46/77 (59%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
R+++VGN+P + + +++D+F + GP++ L + +P GY F E++D A A+
Sbjct: 7 RTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDL---KIPPRPPGYAFVEFEDPRDADDAIY 63
Query: 346 NLNGYEIGGRSLRVDNA 396
+GY+ G LRV+ A
Sbjct: 64 GRDGYDFDGCRLRVEIA 80
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/93 (25%), Positives = 47/93 (50%)
Frame = +1
Query: 109 IKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKP 288
+ +KS + S + + +FVG + TE + K F++ G + +++D T +P
Sbjct: 14 VVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRP 73
Query: 289 KGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 387
+G+GF Y D E A+ + +E+ G+ + V
Sbjct: 74 RGFGFISY-DSEEAVDKVLQKTFHELNGKMVEV 105
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/93 (25%), Positives = 47/93 (50%)
Frame = +1
Query: 109 IKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKP 288
+ +KS + S + + +FVG + TE + K F++ G + +++D T +P
Sbjct: 87 VVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRP 146
Query: 289 KGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 387
+G+GF Y D E A+ + +E+ G+ + V
Sbjct: 147 RGFGFISY-DSEEAVDKVLQKTFHELNGKMVEV 178
Score = 50.4 bits (115), Expect = 8e-07
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +1
Query: 151 MDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETA 330
M+ +F+G I +E +E++L+D F G VL ++ DR TG+ +G+GF + D A
Sbjct: 1 MEMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/93 (25%), Positives = 47/93 (50%)
Frame = +1
Query: 109 IKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKP 288
+ +KS + S + + +FVG + TE + K F++ G + +++D T +P
Sbjct: 87 VVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRP 146
Query: 289 KGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 387
+G+GF Y D E A+ + +E+ G+ + V
Sbjct: 147 RGFGFISY-DSEEAVDKVLQKTFHELNGKMVEV 178
Score = 50.4 bits (115), Expect = 8e-07
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +1
Query: 151 MDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETA 330
M+ +F+G I +E +E++L+D F G VL ++ DR TG+ +G+GF + D A
Sbjct: 1 MEMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/75 (30%), Positives = 44/75 (58%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+++G + E LKD FS V +++ ++ TG+ +GYGF + +++A SA+ +
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92
Query: 352 NGYEIGGRSLRVDNA 396
NG E+ G ++ V+ A
Sbjct: 93 NGQELNGFNISVNVA 107
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 52.0 bits (119), Expect = 3e-07
Identities = 21/77 (27%), Positives = 43/77 (55%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
+ +FVG +P TE + K+ F + G + +++D T +P+G+GF + D E ++ +
Sbjct: 122 KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSEESVDMVL 180
Query: 346 NLNGYEIGGRSLRVDNA 396
+ +E+ G+ + V A
Sbjct: 181 HKTFHELNGKMVEVKRA 197
Score = 48.8 bits (111), Expect = 2e-06
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Frame = +1
Query: 136 EEQSIMDKS-MRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEY 312
EEQ + S + +F+G I ++ EE+L++ F + G ++ ++ DR TG+ +G+GF +
Sbjct: 4 EEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVF 63
Query: 313 KDQETALSAMRNLNGYEIGGRSLRVDNA 396
D A + ++ + I GR++ A
Sbjct: 64 ADPSVAERVI--MDKHIIDGRTVEAKKA 89
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/62 (35%), Positives = 37/62 (59%)
Frame = +1
Query: 154 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 333
D + VFVG + +E +E +K F + G +L ++ D+ +G+ KGYGF +++ E A
Sbjct: 9 DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
Query: 334 SA 339
SA
Sbjct: 69 SA 70
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/62 (35%), Positives = 37/62 (59%)
Frame = +1
Query: 154 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 333
D + VFVG + +E +E +K F + G +L ++ D+ +G+ KGYGF +++ E A
Sbjct: 9 DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
Query: 334 SA 339
SA
Sbjct: 69 SA 70
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/62 (35%), Positives = 37/62 (59%)
Frame = +1
Query: 154 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 333
D + VFVG + +E +E +K F + G +L ++ D+ +G+ KGYGF +++ E A
Sbjct: 9 DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
Query: 334 SA 339
SA
Sbjct: 69 SA 70
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 51.6 bits (118), Expect = 4e-07
Identities = 22/63 (34%), Positives = 38/63 (60%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
+V++GN+ ++ L DI + G V+ + D+ET KPKG+ F EY+ +E A A++
Sbjct: 8 TVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVKL 67
Query: 349 LNG 357
+G
Sbjct: 68 FSG 70
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 51.6 bits (118), Expect = 4e-07
Identities = 21/71 (29%), Positives = 41/71 (57%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
V++G IP +ATE LK +G V +++ ++++G KGY F ++ ++ A A+ L
Sbjct: 94 VYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTL 153
Query: 352 NGYEIGGRSLR 384
N + G+ ++
Sbjct: 154 NNTDFRGKRIK 164
Score = 48.4 bits (110), Expect = 3e-06
Identities = 20/73 (27%), Positives = 41/73 (56%)
Frame = +1
Query: 163 MRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAM 342
++++++ N+P + T+E+LK +F G +L + + + YGF Y ++ + + A+
Sbjct: 267 VKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRAL 326
Query: 343 RNLNGYEIGGRSL 381
+N YEI G L
Sbjct: 327 KNTERYEIDGHML 339
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGP-VLSFKLVFD-RETGKPKGYGFCEYKDQETA 330
+F+GN+P E +K + +GP V +L + + G+ +G+ F EY + A
Sbjct: 174 LFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQNMGRNRGFAFIEYYNHACA 228
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 51.6 bits (118), Expect = 4e-07
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Frame = +1
Query: 154 DKS--MRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQET 327
DKS +V+V N+ AT+ LK +F E G + S ++ D E GK + +GF ++ E
Sbjct: 113 DKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEA 171
Query: 328 ALSAMRNLNGYEIGGRSLRVDNACTEKSRME 420
A++A+ +NG + + L V A + +R E
Sbjct: 172 AVTAIEKMNGVVVDEKELHVGRAQRKTNRTE 202
Score = 41.1 bits (92), Expect = 5e-04
Identities = 25/73 (34%), Positives = 38/73 (52%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
+VFV N+ ++L D+FS G VLS K+ D +G KGYGF ++ + +A
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARD-ASGVSKGYGFVQFYSDLSVYTACNF 90
Query: 349 LNGYEIGGRSLRV 387
NG I + + V
Sbjct: 91 HNGTLIRNQHIHV 103
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 51.2 bits (117), Expect = 5e-07
Identities = 27/74 (36%), Positives = 44/74 (59%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
RSV+VGN+ Y T E+++ F G V ++ D+ G+PKG+ + E+ + E A++
Sbjct: 89 RSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDK-FGQPKGFAYVEFVEVEAVQEALQ 147
Query: 346 NLNGYEIGGRSLRV 387
LN E+ GR L+V
Sbjct: 148 -LNESELHGRQLKV 160
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 51.2 bits (117), Expect = 5e-07
Identities = 27/74 (36%), Positives = 44/74 (59%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
RSV+VGN+ Y T E+++ F G V ++ D+ G+PKG+ + E+ + E A++
Sbjct: 89 RSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDK-FGQPKGFAYVEFVEVEAVQEALQ 147
Query: 346 NLNGYEIGGRSLRV 387
LN E+ GR L+V
Sbjct: 148 -LNESELHGRQLKV 160
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 51.2 bits (117), Expect = 5e-07
Identities = 31/109 (28%), Positives = 49/109 (44%)
Frame = +1
Query: 154 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 333
D + VFVG + ++ +E + D F + G +L ++ D+ T + KGYGF +KD + A
Sbjct: 13 DTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAAT 72
Query: 334 SAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVENPYGDPVEP 480
A + I GR N + R+ M PQ G+ P
Sbjct: 73 RACEDSTPI-INGRRANC-NLASLGGRLRKSPTMTSPQQGPKNGNRATP 119
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 51.2 bits (117), Expect = 5e-07
Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
R ++VGN+ +E+ L+ +F G V ++ D ETG KG+GF ++ E A +A+
Sbjct: 285 RRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNAL- 342
Query: 346 NLNG-YEIGGRSLRVDNACTEKSRM 417
NLNG EI GR+++V +A T+++ +
Sbjct: 343 NLNGQLEIAGRAIKV-SAVTDQTEV 366
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 51.2 bits (117), Expect = 5e-07
Identities = 19/77 (24%), Positives = 44/77 (57%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
R +FVG +P E++LK+ F G ++ ++++D TG+ +G+GF ++ +++
Sbjct: 157 RKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFS 216
Query: 346 NLNGYEIGGRSLRVDNA 396
+ +E+G + + + A
Sbjct: 217 DGKVHELGDKQVEIKRA 233
Score = 49.6 bits (113), Expect = 1e-06
Identities = 24/74 (32%), Positives = 37/74 (50%)
Frame = +1
Query: 109 IKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKP 288
I+M S + S S +FVG + +E T E + F + G V+ ++ DR TG P
Sbjct: 47 IQMKHSVDHRHSSSSMSSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNP 106
Query: 289 KGYGFCEYKDQETA 330
+G+GF + D A
Sbjct: 107 RGFGFVTFADSAVA 120
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 51.2 bits (117), Expect = 5e-07
Identities = 25/94 (26%), Positives = 46/94 (48%)
Frame = +1
Query: 124 SKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGF 303
+K + ++D +FVG + + T+ +++ + S+ G V K +R +GK KGY
Sbjct: 188 NKSPTQSFVVDNGNTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQ 247
Query: 304 CEYKDQETALSAMRNLNGYEIGGRSLRVDNACTE 405
E+ D A + +NG+ G++ V A E
Sbjct: 248 VEFYDSAAAAACKEGMNGFIFNGKACVVAFASPE 281
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 50.8 bits (116), Expect = 6e-07
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Frame = +1
Query: 148 IMDKSMR-SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEY---K 315
+ D+S +FVG++P ATEE+++ F + G VL L+ D+ TG+ +G F +Y K
Sbjct: 113 VSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSK 172
Query: 316 DQETALSAMRNLNGYEIGGRSLRVDNACTEKSRM 417
D + A+ A+ N G ++V A E+ R+
Sbjct: 173 DADRAIRALHNQITLPGGTGPVQVRYADGERERI 206
Score = 48.0 bits (109), Expect = 4e-06
Identities = 24/62 (38%), Positives = 42/62 (67%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+FVG++ +ATE+++++IF + G V L+ D E + +G GF +Y +ETA++A+ L
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGL 271
Query: 352 NG 357
NG
Sbjct: 272 NG 273
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 50.8 bits (116), Expect = 6e-07
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Frame = +1
Query: 148 IMDKSMR-SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEY---K 315
+ D+S +FVG++P ATEE+++ F + G VL L+ D+ TG+ +G F +Y K
Sbjct: 113 VSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSK 172
Query: 316 DQETALSAMRNLNGYEIGGRSLRVDNACTEKSRM 417
D + A+ A+ N G ++V A E+ R+
Sbjct: 173 DADRAIRALHNQITLPGGTGPVQVRYADGERERI 206
Score = 48.0 bits (109), Expect = 4e-06
Identities = 24/62 (38%), Positives = 42/62 (67%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+FVG++ +ATE+++++IF + G V L+ D E + +G GF +Y +ETA++A+ L
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGL 271
Query: 352 NG 357
NG
Sbjct: 272 NG 273
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 50.8 bits (116), Expect = 6e-07
Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 7/145 (4%)
Frame = +1
Query: 109 IKMDKSKEKEEQSIMDK-----SMR--SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVF 267
+K D+ +E +Q D +MR +++V N+ E +L++IF G ++S K V
Sbjct: 278 LKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAK-VM 336
Query: 268 DRETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQ 447
E G+ KG+GF + + E + A R LNG+ + G+ + V A E+ ++ L Q Q
Sbjct: 337 CHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVA--ERKEDRIKRLQQYFQ 394
Query: 448 VENPYGDPVEPEKAPEAISKAVATL 522
+ P + +AP A S A L
Sbjct: 395 AQ-----PRQYTQAPSAPSPAQPVL 414
Score = 45.6 bits (103), Expect = 2e-05
Identities = 24/73 (32%), Positives = 42/73 (57%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
S++VG++ + TE+ L D FS PV+S L + TGK Y + + +A +AM
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 349 LNGYEIGGRSLRV 387
LN ++ G+++R+
Sbjct: 82 LNHSDLKGKAMRI 94
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 50.8 bits (116), Expect = 6e-07
Identities = 24/73 (32%), Positives = 40/73 (54%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+ V + E EE + + F + G + + L DR +G KGY EY+ +E A SA+ +
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156
Query: 352 NGYEIGGRSLRVD 390
NG E+ +++ VD
Sbjct: 157 NGAELLTQNVSVD 169
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 50.8 bits (116), Expect = 6e-07
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGP-VLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
S+FVG++ + ++ L + F+ P V K+V D TG+ KGYGF + D+ AM
Sbjct: 214 SIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMT 273
Query: 346 NLNGYEIGGRSLRVDNACTEKS 411
+NG R +RV A +++
Sbjct: 274 EMNGAFCSSRQMRVGIATPKRA 295
Score = 47.6 bits (108), Expect = 6e-06
Identities = 26/73 (35%), Positives = 43/73 (58%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
++FVG + + TEE L FS+ G V+S K+ KG GF ++ ++++A A+ N
Sbjct: 328 TIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG------KGCGFVQFANRQSAEEAIGN 381
Query: 349 LNGYEIGGRSLRV 387
LNG IG ++R+
Sbjct: 382 LNGTVIGKNTVRL 394
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 50.4 bits (115), Expect = 8e-07
Identities = 25/77 (32%), Positives = 41/77 (53%)
Frame = +1
Query: 115 MDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKG 294
+D + E + D R +FV + ++ E L + F + G + K VFD+ +GK KG
Sbjct: 123 VDVANRIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKG 182
Query: 295 YGFCEYKDQETALSAMR 345
YGF YK + A +A++
Sbjct: 183 YGFILYKSRSGARNALK 199
Score = 44.0 bits (99), Expect = 7e-05
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +1
Query: 139 EQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKD 318
+ S + + + ++V N+ E +KL FS+ G + L D+ TG+PKG+ YK
Sbjct: 236 QHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKS 295
Query: 319 QETALSAM 342
E+A A+
Sbjct: 296 SESAKRAL 303
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 50.4 bits (115), Expect = 8e-07
Identities = 25/77 (32%), Positives = 41/77 (53%)
Frame = +1
Query: 115 MDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKG 294
+D + E + D R +FV + ++ E L + F + G + K VFD+ +GK KG
Sbjct: 123 VDVANRIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKG 182
Query: 295 YGFCEYKDQETALSAMR 345
YGF YK + A +A++
Sbjct: 183 YGFILYKSRSGARNALK 199
Score = 44.0 bits (99), Expect = 7e-05
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +1
Query: 139 EQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKD 318
+ S + + + ++V N+ E +KL FS+ G + L D+ TG+PKG+ YK
Sbjct: 236 QHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKS 295
Query: 319 QETALSAM 342
E+A A+
Sbjct: 296 SESAKRAL 303
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 50.4 bits (115), Expect = 8e-07
Identities = 25/77 (32%), Positives = 41/77 (53%)
Frame = +1
Query: 115 MDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKG 294
+D + E + D R +FV + ++ E L + F + G + K VFD+ +GK KG
Sbjct: 123 VDVANRIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKG 182
Query: 295 YGFCEYKDQETALSAMR 345
YGF YK + A +A++
Sbjct: 183 YGFILYKSRSGARNALK 199
Score = 44.0 bits (99), Expect = 7e-05
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +1
Query: 139 EQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKD 318
+ S + + + ++V N+ E +KL FS+ G + L D+ TG+PKG+ YK
Sbjct: 236 QHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKS 295
Query: 319 QETALSAM 342
E+A A+
Sbjct: 296 SESAKRAL 303
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 50.4 bits (115), Expect = 8e-07
Identities = 25/77 (32%), Positives = 45/77 (58%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
RS++VGN+P + E +++DIF + G ++ +L + +P Y F E++ A A++
Sbjct: 7 RSIYVGNLPGDIREHEIEDIFYKYGRIVDIEL---KVPPRPPCYCFVEFEHSRDAEDAIK 63
Query: 346 NLNGYEIGGRSLRVDNA 396
+GY + G LRV+ A
Sbjct: 64 GRDGYNLDGCRLRVELA 80
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/65 (36%), Positives = 37/65 (56%)
Frame = +1
Query: 148 IMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQET 327
I D SMR ++V N+P++ ++L + F G V L FD+ TGK +G+ YK E
Sbjct: 161 IADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEG 220
Query: 328 ALSAM 342
A +A+
Sbjct: 221 AQAAL 225
Score = 48.0 bits (109), Expect = 4e-06
Identities = 22/64 (34%), Positives = 36/64 (56%)
Frame = +1
Query: 154 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 333
D S R +F+ + + T E L+ +FS G + ++ D+ TGK KGYGF + + AL
Sbjct: 71 DISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGAL 130
Query: 334 SAMR 345
A++
Sbjct: 131 LALK 134
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/65 (36%), Positives = 37/65 (56%)
Frame = +1
Query: 148 IMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQET 327
I D SMR ++V N+P++ ++L + F G V L FD+ TGK +G+ YK E
Sbjct: 161 IADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEG 220
Query: 328 ALSAM 342
A +A+
Sbjct: 221 AQAAL 225
Score = 48.0 bits (109), Expect = 4e-06
Identities = 22/64 (34%), Positives = 36/64 (56%)
Frame = +1
Query: 154 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 333
D S R +F+ + + T E L+ +FS G + ++ D+ TGK KGYGF + + AL
Sbjct: 71 DISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGAL 130
Query: 334 SAMR 345
A++
Sbjct: 131 LALK 134
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 50.0 bits (114), Expect = 1e-06
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFS--EVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
++V N+ ++A L+++F+ + PV S ++VF G+ GYGF + +E A +A+
Sbjct: 196 LYVSNLAWKARSTHLRELFTAADFNPV-SARVVFADPEGRSSGYGFVSFATREEAENAIT 254
Query: 346 NLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVENPYGDPVEPEKAPE 495
LNG EI GR + + + S E ++ GD VE + E
Sbjct: 255 KLNGKEIMGRPITLKFSLRSASESEDGDSVEANNASED-GDTVEDKNTSE 303
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/80 (30%), Positives = 48/80 (60%)
Frame = +1
Query: 148 IMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQET 327
+M +S V+VGN+P+ + L++ FS+ G ++S +++ DR+TG+ + + F + E
Sbjct: 206 LMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE 265
Query: 328 ALSAMRNLNGYEIGGRSLRV 387
+A+ + NG + GR + V
Sbjct: 266 RDAAL-SFNGTQYEGRRIIV 284
Score = 47.6 bits (108), Expect = 6e-06
Identities = 24/72 (33%), Positives = 42/72 (58%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
++V NIP +L D+F G V+S ++ + +TG+ +G G+ +A A+ +L
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 169
Query: 352 NGYEIGGRSLRV 387
+G E+GGR +RV
Sbjct: 170 DGTEVGGREMRV 181
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 49.6 bits (113), Expect = 1e-06
Identities = 20/65 (30%), Positives = 37/65 (56%)
Frame = +1
Query: 154 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 333
D + +FVGN+ + T + L+ F + G V+ +V + G+ KGYGF ++D + +
Sbjct: 8 DTRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTV 67
Query: 334 SAMRN 348
A++N
Sbjct: 68 RALQN 72
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 48.8 bits (111), Expect = 2e-06
Identities = 24/74 (32%), Positives = 44/74 (59%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
RS++VGN+ Y T E+++ F G V ++ D+ G+PKG+ + E+ + E +++
Sbjct: 103 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEVEAVQNSL- 160
Query: 346 NLNGYEIGGRSLRV 387
LN E+ GR ++V
Sbjct: 161 ILNESELHGRQIKV 174
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 48.8 bits (111), Expect = 2e-06
Identities = 25/74 (33%), Positives = 38/74 (51%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
SV V N+ + E L ++F G V + D++TG +G+GF + +E A A+
Sbjct: 214 SVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINK 273
Query: 349 LNGYEIGGRSLRVD 390
LNGY LRV+
Sbjct: 274 LNGYGYDNLILRVE 287
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 48.8 bits (111), Expect = 2e-06
Identities = 23/86 (26%), Positives = 46/86 (53%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+F G++ E ++ L F+ K++ D+ TGK KGYGF + + +A++ +
Sbjct: 139 LFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEM 198
Query: 352 NGYEIGGRSLRVDNACTEKSRMEMQA 429
NG +G R +++ + + K R + +A
Sbjct: 199 NGKYVGNRPIKLRKS-SWKERTDQEA 223
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 48.4 bits (110), Expect = 3e-06
Identities = 20/73 (27%), Positives = 44/73 (60%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+++ N+ Y E +K++F+EVG + + + FDR +G+ KG Y + AL+A++
Sbjct: 88 LYISNLDYGVMNEDIKELFAEVGELKRYTVHFDR-SGRSKGTAEVVYSRRGDALAAVKKY 146
Query: 352 NGYEIGGRSLRVD 390
N ++ G+ ++++
Sbjct: 147 NDVQLDGKPMKIE 159
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 48.4 bits (110), Expect = 3e-06
Identities = 20/73 (27%), Positives = 44/73 (60%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+++ N+ Y E +K++F+EVG + + + FDR +G+ KG Y + AL+A++
Sbjct: 24 LYISNLDYGVMNEDIKELFAEVGELKRYTVHFDR-SGRSKGTAEVVYSRRGDALAAVKKY 82
Query: 352 NGYEIGGRSLRVD 390
N ++ G+ ++++
Sbjct: 83 NDVQLDGKPMKIE 95
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 48.4 bits (110), Expect = 3e-06
Identities = 20/73 (27%), Positives = 44/73 (60%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+++ N+ Y E +K++F+EVG + + + FDR +G+ KG Y + AL+A++
Sbjct: 90 LYISNLDYGVMNEDIKELFAEVGELKRYTVHFDR-SGRSKGTAEVVYSRRGDALAAVKKY 148
Query: 352 NGYEIGGRSLRVD 390
N ++ G+ ++++
Sbjct: 149 NDVQLDGKPMKIE 161
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 48.4 bits (110), Expect = 3e-06
Identities = 26/96 (27%), Positives = 51/96 (53%)
Frame = +1
Query: 109 IKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKP 288
I+ S K + I K++ V + T++ L+ +F+ +L+ D++T +P
Sbjct: 52 IRPRSSISKRRRLIGGKTLTCVSNSGLSAYTTDQSLRQLFAPFA-----RLIKDQQTQRP 106
Query: 289 KGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 396
KG+GF ++ ++ A A++ LNG + GR + V+ A
Sbjct: 107 KGFGFITFESEDDAQKALKALNGKIVNGRLIFVETA 142
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 48.4 bits (110), Expect = 3e-06
Identities = 25/104 (24%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Frame = +1
Query: 118 DKSKEKEEQSIMDKSMR---SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKP 288
DK + ++ + + K R + F+ N+ +A EE ++ F + G V S +++ ++TGKP
Sbjct: 632 DKEETEDAKPLKPKVYRDECTAFISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKP 691
Query: 289 KGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRME 420
+G + ++ D E +A+ N G+ + + + +K + E
Sbjct: 692 RGLAYADFVDDEHLAAAIAK-NRKMFFGKKISIARSNPKKGKKE 734
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 48.4 bits (110), Expect = 3e-06
Identities = 25/104 (24%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Frame = +1
Query: 118 DKSKEKEEQSIMDKSMR---SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKP 288
DK + ++ + + K R + F+ N+ +A EE ++ F + G V S +++ ++TGKP
Sbjct: 632 DKEETEDAKPLKPKVYRDECTAFISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKP 691
Query: 289 KGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRME 420
+G + ++ D E +A+ N G+ + + + +K + E
Sbjct: 692 RGLAYADFVDDEHLAAAIAK-NRKMFFGKKISIARSNPKKGKKE 734
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 48.4 bits (110), Expect = 3e-06
Identities = 20/77 (25%), Positives = 42/77 (54%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
+ +FVG +P T ++ + F GPV ++ D+ T +P+G+GF + D E ++ +
Sbjct: 110 KKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSF-DSEDSVDLVL 168
Query: 346 NLNGYEIGGRSLRVDNA 396
+ +++ G+ + V A
Sbjct: 169 HKTFHDLNGKQVEVKRA 185
Score = 48.0 bits (109), Expect = 4e-06
Identities = 18/56 (32%), Positives = 33/56 (58%)
Frame = +1
Query: 151 MDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKD 318
M+ +F+G I ++ E L++ FS G VL ++ ++ TG+P+G+GF + D
Sbjct: 1 MESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSD 56
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 48.4 bits (110), Expect = 3e-06
Identities = 20/62 (32%), Positives = 35/62 (56%)
Frame = +1
Query: 154 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 333
D + VFVG + +E + L++ F + G ++ ++ D+ +G+ KGYGF + D E A
Sbjct: 3 DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 334 SA 339
A
Sbjct: 63 KA 64
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 48.4 bits (110), Expect = 3e-06
Identities = 20/62 (32%), Positives = 35/62 (56%)
Frame = +1
Query: 154 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 333
D + VFVG + +E + L++ F + G ++ ++ D+ +G+ KGYGF + D E A
Sbjct: 3 DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 334 SA 339
A
Sbjct: 63 KA 64
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 48.0 bits (109), Expect = 4e-06
Identities = 22/72 (30%), Positives = 42/72 (58%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+++G IP+ E +++ FS+ G V ++ +++TGK K +GF +++D E A A +
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121
Query: 352 NGYEIGGRSLRV 387
N Y + L+V
Sbjct: 122 NDYLLMEHMLKV 133
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 48.0 bits (109), Expect = 4e-06
Identities = 21/80 (26%), Positives = 47/80 (58%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+++ N+ Y + E +K++FSEVG + + + +DR +G+ KG + + AL+A++
Sbjct: 110 LYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDR-SGRSKGTAEVVFSRRGDALAAVKRY 168
Query: 352 NGYEIGGRSLRVDNACTEKS 411
N ++ G+ ++++ T S
Sbjct: 169 NNVQLDGKLMKIEIVGTNLS 188
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 47.6 bits (108), Expect = 6e-06
Identities = 26/88 (29%), Positives = 46/88 (52%)
Frame = +1
Query: 124 SKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGF 303
S K + + R ++V N+P+ T E++ DIF + G + ++ D+ T KG F
Sbjct: 5 SLRKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKAT---KGTAF 61
Query: 304 CEYKDQETALSAMRNLNGYEIGGRSLRV 387
Y+D A +A+ +L+G+ + R L V
Sbjct: 62 VVYEDIYDAKNAVDHLSGFNVANRYLIV 89
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 47.2 bits (107), Expect = 8e-06
Identities = 30/93 (32%), Positives = 48/93 (51%)
Frame = +1
Query: 133 KEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEY 312
KE+ + R ++VGN+P+ E +L D F G + S L F + G+ Y F +
Sbjct: 12 KEDGRGRNPPSRHLWVGNLPHGILERELADRFLRFGELES--LAF--QPGR--SYAFVNF 65
Query: 313 KDQETALSAMRNLNGYEIGGRSLRVDNACTEKS 411
E A +A+ +L G+ + G LR++ A EKS
Sbjct: 66 NHDEDAFAAIESLQGFPLSGNPLRIEFAKAEKS 98
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 46.8 bits (106), Expect = 1e-05
Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 9/146 (6%)
Frame = +1
Query: 121 KSKEKEEQSIMDKSMR--SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKG 294
KS + S+ + ++R ++FV N+PYE + D F +VG V+ +L+ + + GK G
Sbjct: 110 KSDQANLISVKEAAVREKTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLK-GKLVG 168
Query: 295 YGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVENPY---- 462
GF E+ A A++ NG + + +D A + + + + + + Y
Sbjct: 169 CGFVEFASVNEAEEALQKKNGECLDNNKIFLDVANKKATYLPPKYCIDHKVWDKDYRRLE 228
Query: 463 GDPV-EPEKAPEAISKA--VATLPPE 531
P+ E E+ P ++ + VA L P+
Sbjct: 229 SHPIEEDERPPNSVEEVLFVANLSPQ 254
>At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 180
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/82 (24%), Positives = 43/82 (52%)
Frame = +1
Query: 121 KSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYG 300
+S+ E ++++++ N+P + T+E+LK +F G +L + + + YG
Sbjct: 19 ESRSGGEGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYG 78
Query: 301 FCEYKDQETALSAMRNLNGYEI 366
F Y ++ + + A++N YEI
Sbjct: 79 FVHYAERTSVMRALKNTERYEI 100
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 45.6 bits (103), Expect = 2e-05
Identities = 25/81 (30%), Positives = 48/81 (59%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
V++GN+ ++ TE ++ +FS+ + S +L ++ETG+ KGY ++KD + A++ L
Sbjct: 264 VYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALK-L 321
Query: 352 NGYEIGGRSLRVDNACTEKSR 414
+ I GR +++ C K R
Sbjct: 322 DQQVICGRPVKI--CCALKDR 340
Score = 37.5 bits (83), Expect = 0.006
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = +1
Query: 133 KEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEY 312
KEE ++ + +VG IPY++TE++++ F G ++ E G G F +
Sbjct: 153 KEEDGVVPNKL---YVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITF 209
Query: 313 KDQETALSAM 342
++ A A+
Sbjct: 210 DTEDGAKRAL 219
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/69 (28%), Positives = 37/69 (53%)
Frame = +1
Query: 178 VGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLNG 357
V ++ E LK+IF G V+ ++ DR P+G+G+ E+K + A A ++G
Sbjct: 102 VDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDG 161
Query: 358 YEIGGRSLR 384
+I G+ ++
Sbjct: 162 AQIDGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/69 (28%), Positives = 37/69 (53%)
Frame = +1
Query: 178 VGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLNG 357
V ++ E LK+IF G V+ ++ DR P+G+G+ E+K + A A ++G
Sbjct: 102 VDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDG 161
Query: 358 YEIGGRSLR 384
+I G+ ++
Sbjct: 162 AQIDGKVVK 170
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 45.2 bits (102), Expect = 3e-05
Identities = 18/74 (24%), Positives = 42/74 (56%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
+V++ N+ T E ++++++E+G + + + +D+ G+P G Y + A+ AMR
Sbjct: 108 TVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKN-GRPSGSAEVVYMRRSDAIQAMRK 166
Query: 349 LNGYEIGGRSLRVD 390
N + GR ++++
Sbjct: 167 YNNVLLDGRPMKLE 180
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 44.8 bits (101), Expect = 4e-05
Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Frame = +1
Query: 151 MDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETA 330
+++ +FVG +P +E +++ +FS+ G + +++ + KG F +Y+ +E A
Sbjct: 101 LERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTS-KGCAFLKYETKEQA 159
Query: 331 LSAMRNLNG-YEIGGRS--LRVDNACTEKSRMEMQALMQGPQVEN-PYGDPVEP 480
+SAM ++NG +++ G + L V A TE+ R + + GDP P
Sbjct: 160 VSAMESINGKHKMEGSTVPLVVKWADTERERHTRRLQKAQSHIARLGNGDPTNP 213
Score = 35.1 bits (77), Expect = 0.033
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYG 300
++F+ NIP E +++L F G VLS K+ D+ TG K +G
Sbjct: 349 NLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFG 392
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 44.8 bits (101), Expect = 4e-05
Identities = 27/91 (29%), Positives = 51/91 (56%)
Frame = +1
Query: 157 KSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALS 336
K +S++VG I +++ L++ FS+ G + F+ + +R+T F +Y + + AL
Sbjct: 247 KPCKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTA------FIDYYEMDDALQ 300
Query: 337 AMRNLNGYEIGGRSLRVDNACTEKSRMEMQA 429
A +++NG +GG LRVD ++ + E A
Sbjct: 301 A-KSMNGKPMGGSFLRVDFLRSQAPKKEQWA 330
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 44.4 bits (100), Expect = 5e-05
Identities = 25/84 (29%), Positives = 43/84 (51%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
SV V N+ + L ++F G V + D++T +G+GF + +E A A+
Sbjct: 175 SVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINK 234
Query: 349 LNGYEIGGRSLRVDNACTEKSRME 420
LNGY LRV+ + T K++++
Sbjct: 235 LNGYGYDNLILRVEWS-TPKTQLD 257
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 44.4 bits (100), Expect = 5e-05
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
R +FV + ++ + L D F + G + K V D+ +G+ KGYGF +K + A +A++
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187
Score = 44.4 bits (100), Expect = 5e-05
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAM 342
R ++V N+ + +KL + FS G + L D+ TG+PKG+ Y+ E+A A+
Sbjct: 227 RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKAL 285
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 44.0 bits (99), Expect = 7e-05
Identities = 26/88 (29%), Positives = 44/88 (50%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
R + V IP++ + LKD S+ G + ++ DR TG+ +G+G+ + E A +A++
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK 62
Query: 346 NLNGYEIGGRSLRVDNACTEKSRMEMQA 429
+ +G R L V T K M A
Sbjct: 63 --GEHFLGNRILEV-KVATPKEEMRQPA 87
Score = 41.1 bits (92), Expect = 5e-04
Identities = 22/97 (22%), Positives = 44/97 (45%)
Frame = +1
Query: 106 IIKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGK 285
I+++ + KEE K + +FV IP +E + F G + + D + +
Sbjct: 71 ILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQ 130
Query: 286 PKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 396
+G GF + ++ M + +++GG ++ VD A
Sbjct: 131 HRGIGFITFSSADSVEDLMEDT--HDLGGTTVAVDRA 165
Score = 41.1 bits (92), Expect = 5e-04
Identities = 21/75 (28%), Positives = 38/75 (50%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+FVG +P EA+ + L+D F G + + D + +G+GF + + A R
Sbjct: 242 IFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVAR-- 299
Query: 352 NGYEIGGRSLRVDNA 396
+EI G+ + +D+A
Sbjct: 300 RSHEICGQEVAIDSA 314
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 43.6 bits (98), Expect = 9e-05
Identities = 24/75 (32%), Positives = 38/75 (50%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+FVG++ + T+ +L+ + G V K ++ +GK KGY E+ D A + L
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDAL 295
Query: 352 NGYEIGGRSLRVDNA 396
NGY GR V+ A
Sbjct: 296 NGYPFNGRPCVVEYA 310
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 43.6 bits (98), Expect = 9e-05
Identities = 20/71 (28%), Positives = 38/71 (53%)
Frame = +1
Query: 178 VGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLNG 357
V N+ T E ++++FSE+G V + + +D+ G+P G Y + A A++ N
Sbjct: 97 VTNLDQGVTNEDIRELFSEIGEVERYAIHYDK-NGRPSGTAEVVYPRRSDAFQALKKYNN 155
Query: 358 YEIGGRSLRVD 390
+ GR +R++
Sbjct: 156 VLLDGRPMRLE 166
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 43.2 bits (97), Expect = 1e-04
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = +1
Query: 163 MRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAM 342
MR VFVGN YE + L+ +F + G V DR K GY F ++D+ A A+
Sbjct: 1 MRPVFVGNFEYETRQSDLERLFDKYGRV-------DRVDMK-SGYAFVYFEDERDAEDAI 52
Query: 343 RNLNGYEIG--GRSLRVDNACTEKSR 414
R L+ + G R L V+ A E+ R
Sbjct: 53 RKLDNFPFGYEKRRLSVEWAKGERGR 78
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLV-FDRETGKPKGYGFCEYKDQETALSAMRN 348
+FVGN+P + + ++ F + GP+ + L+ E K G+GF Y +++A+ A+
Sbjct: 167 IFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAV-E 225
Query: 349 LNGYEIGGRSLRV 387
+G E GR L V
Sbjct: 226 FDGVEFHGRILTV 238
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 41.9 bits (94), Expect = 3e-04
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 3/138 (2%)
Frame = +1
Query: 151 MDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETA 330
++ S +F+G + E L +I S GP+ +++ V + + + F EY D
Sbjct: 35 VEDSSNKIFIGGFSKAISSEMLMEIVSVFGPLKAYRFVSNNDLN--QRCAFLEYTDGSVT 92
Query: 331 LSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVENPYGDPVEPEK---APEAI 501
L A LNG +GG + A + S + A+ + P YG P + P+ I
Sbjct: 93 LKACAGLNGMRLGGSVITAVCAFPDASSV---AVNENPPF---YGIPSHAKPLLGKPKNI 146
Query: 502 SKAVATLPPEQMFELMKQ 555
K + PE + +Q
Sbjct: 147 LKLKNVVDPEDLTSFSEQ 164
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 41.5 bits (93), Expect = 4e-04
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Frame = +1
Query: 115 MDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVL--SFKLVFDRETGKP 288
+ KS +K +Q +++ S+FV N+P A +L ++F + GP+ ++ R P
Sbjct: 263 VSKSIKKNDQKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKENGIQVRSSRGNANP 322
Query: 289 KGYGFCEYK---DQETALSAMRNLNGYEIGGRSLRV 387
+GF ++ ++ L A +N + + R LRV
Sbjct: 323 VCFGFISFETVASVQSVLQAAKN-TPFMLADRKLRV 357
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 40.7 bits (91), Expect = 7e-04
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +1
Query: 154 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 333
+K ++++G I + + I G V S D T KPKG+GF E++ E L
Sbjct: 200 EKPQTTIYIGKIA-TVENDFMMSILEFCGHVKSCLRAEDPTTKKPKGFGFYEFESAEGIL 258
Query: 334 SAMRNLNGYEIGGRSLRVD-NACTEK 408
A+R L I G+ L V+ N T++
Sbjct: 259 RAIRLLTQRTIDGQELLVNVNQATKE 284
>At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|Q27294 RNA-binding protein cabeza {Drosophila
melanogaster}; contains Pfam profiles: PF00076 RNA
recognition motif (aka RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 372
Score = 40.7 bits (91), Expect = 7e-04
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFK--------LVFDRETGKPKGYGFCEYKDQE 324
SV+V N+P E L D F +G + K L D+ET +PKG Y+D
Sbjct: 9 SVYVSNLPLGTDENMLADYFGTIGLLKRDKRTGTPKVWLYRDKETDEPKGDATVTYEDPH 68
Query: 325 TALSAMRNLNGYEIGGRSLRV 387
AL+A+ N + G ++ V
Sbjct: 69 AALAAVEWFNNKDFHGNTIGV 89
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/65 (35%), Positives = 34/65 (52%)
Frame = +1
Query: 163 MRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAM 342
M V+VGN+ TE +L+D F G V S + +P GY F +++D A A+
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVA-----RRPPGYAFLDFEDPRDARDAI 55
Query: 343 RNLNG 357
R L+G
Sbjct: 56 RALDG 60
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/86 (26%), Positives = 43/86 (50%)
Frame = +1
Query: 133 KEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEY 312
KE S D + ++ + N+ + ++L +F G + RET + + F EY
Sbjct: 259 KENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREI-----RETPNRRFHRFIEY 313
Query: 313 KDQETALSAMRNLNGYEIGGRSLRVD 390
D A +A++ LN EIGG+ ++++
Sbjct: 314 YDVRDAETALKALNRSEIGGKCIKLE 339
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/86 (26%), Positives = 43/86 (50%)
Frame = +1
Query: 133 KEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEY 312
KE S D + ++ + N+ + ++L +F G + RET + + F EY
Sbjct: 272 KENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREI-----RETPNRRFHRFIEY 326
Query: 313 KDQETALSAMRNLNGYEIGGRSLRVD 390
D A +A++ LN EIGG+ ++++
Sbjct: 327 YDVRDAETALKALNRSEIGGKCIKLE 352
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = +1
Query: 163 MRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAM 342
M V+VGN+ TE +L+D F G + S + +P GY F +++D A A+
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVA-----RRPPGYAFLDFEDSRDARDAI 55
Query: 343 RNLNG 357
R ++G
Sbjct: 56 REVDG 60
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 163 MRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAM 342
M+ VF GN Y+A E L+ +F + G V G+ F +D+ A A+
Sbjct: 1 MKPVFCGNFEYDARESDLERLFRKYGKV--------ERVDMKAGFAFVYMEDERDAEDAI 52
Query: 343 RNLNGYEIG--GRSLRVD 390
R L+ +E G GR LRV+
Sbjct: 53 RALDRFEYGRTGRRLRVE 70
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 163 MRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAM 342
M+ VF GN Y+A E L+ +F + G V G+ F +D+ A A+
Sbjct: 1 MKPVFCGNFEYDARESDLERLFRKYGKV--------ERVDMKAGFAFVYMEDERDAEDAI 52
Query: 343 RNLNGYEIG--GRSLRVD 390
R L+ +E G GR LRV+
Sbjct: 53 RALDRFEYGRTGRRLRVE 70
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/84 (28%), Positives = 39/84 (46%)
Frame = +1
Query: 154 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 333
+ S +++V N+ + E+L IFS G + R T + E+ D A
Sbjct: 291 NSSEGALWVNNLDSSISNEELHGIFSSYGEIREV-----RRTMHENSQVYIEFFDVRKAK 345
Query: 334 SAMRNLNGYEIGGRSLRVDNACTE 405
A++ LNG E+ GR L++ C E
Sbjct: 346 VALQGLNGLEVAGRQLKLAPTCPE 369
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 39.5 bits (88), Expect = 0.002
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +1
Query: 163 MRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAM 342
M+ VF GN Y+A E L+ +F + G V G+ F +D+ A A+
Sbjct: 1 MKPVFCGNFEYDAREGDLERLFRKYGKV--------ERVDMKAGFAFVYMEDERDAEDAI 52
Query: 343 RNLNGYEIG--GRSLRVDNACTEK 408
R L+ +E G GR LRV+ +E+
Sbjct: 53 RALDRFEFGRKGRRLRVEWTKSER 76
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 39.5 bits (88), Expect = 0.002
Identities = 30/88 (34%), Positives = 44/88 (50%)
Frame = +1
Query: 124 SKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGF 303
SK + E SI R+V+V +I TEE L +FS G V+ ++ D + F
Sbjct: 118 SKAQREDSIR----RTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGD--PNSVLRFAF 171
Query: 304 CEYKDQETALSAMRNLNGYEIGGRSLRV 387
E+ D + A SA+ +L G IG +RV
Sbjct: 172 VEFSDDQGARSAL-SLGGTMIGYYPVRV 198
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 38.3 bits (85), Expect = 0.004
Identities = 26/133 (19%), Positives = 58/133 (43%)
Frame = +1
Query: 139 EQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKD 318
E IM + ++++F+ + EE+++D+ G + +L + + + K +GF +
Sbjct: 383 EDEIMAQ-VKTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDT 441
Query: 319 QETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVENPYGDPVEPEKAPEA 498
E A+S + +N E+G ++ ++R+ G ++ D A +
Sbjct: 442 HEAAVSCAKFINNSELG----EGEDKAKVRARLSRPLQKAGKGRQSSRSDQRSRHGAGRS 497
Query: 499 ISKAVATLPPEQM 537
+ A LPP +
Sbjct: 498 GRSSFARLPPRSL 510
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/73 (30%), Positives = 37/73 (50%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
+FV + +E L IFS G V+S ++ D +TG Y F E++++E+ A +
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 352 NGYEIGGRSLRVD 390
+ I R + VD
Sbjct: 305 DNALIDDRRIHVD 317
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 37.9 bits (84), Expect = 0.005
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFK-------------LVFDRETGKPKGYGFCEY 312
+++ N+P + T ++LKD+F +G V K ++ E G KG Y
Sbjct: 282 IYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGYKDQWPYNIKIYTDEKGNYKGDACLAY 341
Query: 313 KDQETALSAMRNLNGYEIGGRSLRVDNACTEKS 411
+D A SA N YE+ G + V A EKS
Sbjct: 342 EDPSAAHSAGGFFNNYEMRGNKISVTMA--EKS 372
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 37.9 bits (84), Expect = 0.005
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFK-------------LVFDRETGKPKGYGFCEY 312
+++ N+P + T ++LKD+F +G V K ++ E G KG Y
Sbjct: 282 IYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGYKDQWPYNIKIYTDEKGNYKGDACLAY 341
Query: 313 KDQETALSAMRNLNGYEIGGRSLRVDNACTEKS 411
+D A SA N YE+ G + V A EKS
Sbjct: 342 EDPSAAHSAGGFFNNYEMRGNKISVTMA--EKS 372
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 37.9 bits (84), Expect = 0.005
Identities = 22/77 (28%), Positives = 36/77 (46%)
Frame = +1
Query: 121 KSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYG 300
K + + D S+ ++V I ATE ++ +F + G V L D+ TG+ Y
Sbjct: 95 KRRSQSATDNADGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYC 154
Query: 301 FCEYKDQETALSAMRNL 351
F +YK E +A+ L
Sbjct: 155 FIKYKKVEEGNAAIAAL 171
Score = 32.7 bits (71), Expect = 0.18
Identities = 16/62 (25%), Positives = 35/62 (56%)
Frame = +1
Query: 172 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 351
++V + + T+ ++ ++FS G + + D + +GY F ++ +E AL+A++ L
Sbjct: 209 LYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALD-DMKICRGYAFVQFSCKEMALAAIKAL 267
Query: 352 NG 357
NG
Sbjct: 268 NG 269
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 37.9 bits (84), Expect = 0.005
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +1
Query: 163 MRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL--- 333
M V+VGN+ TE +L+D F G VL V R P GY F E+ D+ AL
Sbjct: 1 MTRVYVGNLDPRVTERELEDEFKAFG-VLRNVWVARR----PPGYAFLEFDDERDALDAI 55
Query: 334 SAMRNLNGYEI 366
SA+ NG+ +
Sbjct: 56 SALDRKNGWRV 66
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 37.9 bits (84), Expect = 0.005
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +1
Query: 163 MRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL--- 333
M V+VGN+ TE +L+D F G VL V R P GY F E+ D+ AL
Sbjct: 1 MTRVYVGNLDPRVTERELEDEFKAFG-VLRNVWVARR----PPGYAFLEFDDERDALDAI 55
Query: 334 SAMRNLNGYEI 366
SA+ NG+ +
Sbjct: 56 SALDRKNGWRV 66
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 37.1 bits (82), Expect = 0.008
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
+V V + ++TEE L I +E GP+ +++ ++ +G +G+ F ++ + A + M
Sbjct: 299 TVVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDR 358
Query: 349 L--NGYEIGGRSL 381
+ +G + GR L
Sbjct: 359 IEHDGIVLDGRKL 371
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 36.7 bits (81), Expect = 0.011
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +1
Query: 163 MRSVFVGNIPYE-ATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSA 339
M + V N+P + TEE+L+D+FS G + KL + GK + + + ++ ++ A A
Sbjct: 1 MSWIIVKNLPSKHVTEERLRDVFSRKGEIADVKLK-RKSDGKSRQFAYIGFRTEQEAQDA 59
Query: 340 MRNLN 354
+ +N
Sbjct: 60 ITYVN 64
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 36.7 bits (81), Expect = 0.011
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
++ + N+ E + L+ IF GP+ RET K F E+ D A A
Sbjct: 214 TLVIFNLDPEVSSITLRQIFQVYGPIKEL-----RETPYKKHQRFVEFYDVRDAARAFDR 268
Query: 349 LNGYEIGGRSLRVD 390
+NG EIGG+ + ++
Sbjct: 269 MNGKEIGGKQVVIE 282
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 36.3 bits (80), Expect = 0.014
Identities = 28/88 (31%), Positives = 44/88 (50%)
Frame = +1
Query: 124 SKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGF 303
SK + E SI R+V+V +I TEE L +FS G V+ ++ D + + F
Sbjct: 131 SKAQREDSIR----RTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHS--VLRFAF 184
Query: 304 CEYKDQETALSAMRNLNGYEIGGRSLRV 387
E+ D + A A+ +L G +G +RV
Sbjct: 185 VEFADDQGAHEAL-SLGGTMLGFYPVRV 211
>At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 389
Score = 36.3 bits (80), Expect = 0.014
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +1
Query: 115 MDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPV 246
+ KS +K +Q +++ S+FV N+P A +L ++F + GP+
Sbjct: 263 VSKSIKKNDQKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPI 306
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 35.5 bits (78), Expect = 0.025
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +1
Query: 163 MRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAM 342
MR V+VGN Y+ L+ +FS+ G V + GY F ++D+ A A+
Sbjct: 1 MRHVYVGNFDYDTRHSDLERLFSKFGRV--------KRVDMKSGYAFVYFEDERDAEDAI 52
Query: 343 RNLNG--YEIGGRSLRVD 390
R + + G R L V+
Sbjct: 53 RRTDNTTFGYGRRKLSVE 70
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 34.3 bits (75), Expect = 0.058
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +1
Query: 220 DIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLNG 357
D F++VG V+S +L+ E+ K GYGF E+ A A+ NG
Sbjct: 700 DFFNDVGEVVSVRLIVSPES-KHVGYGFVEFASPCLANMALEKKNG 744
Score = 33.5 bits (73), Expect = 0.10
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
++++V +P + + D F +VG V+S +L R G GF E+ A A+
Sbjct: 564 KTLYVCCLPRDTKMPDIIDFFKDVGQVVSVQLTTKR-NGLRLSTGFVEFASANEAKKALD 622
Query: 346 NLNGYEIGGRSLRVDNA-CTEKSRMEMQALMQGPQVENPYGDPVEPEKAPEAISKAVA 516
NG + G L + A C ++ + + +Q + P+E E+ P I ++ A
Sbjct: 623 MKNGEYLCGNKLILGMASCENIAQPKYEDYIQQESL------PIEEEETPPKIVQSGA 674
>At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 420
Score = 33.5 bits (73), Expect = 0.10
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 15/109 (13%)
Frame = +1
Query: 106 IIKMDKSKEKEEQ---SIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKL----- 261
++ D+ K K I D + +V V N+P + + E +++IF + G + S +
Sbjct: 170 VVSADEKKVKRLSPLPEIRDPKIFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNA 229
Query: 262 VFDRETGKPKG-------YGFCEYKDQETALSAMRNLNGYEIGGRSLRV 387
V + E G K + F EY+ E A A LN + LRV
Sbjct: 230 VEESEKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRV 278
>At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 422
Score = 33.5 bits (73), Expect = 0.10
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 15/109 (13%)
Frame = +1
Query: 106 IIKMDKSKEKEEQ---SIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKL----- 261
++ D+ K K I D + +V V N+P + + E +++IF + G + S +
Sbjct: 170 VVSADEKKVKRLSPLPEIRDPKIFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNA 229
Query: 262 VFDRETGKPKG-------YGFCEYKDQETALSAMRNLNGYEIGGRSLRV 387
V + E G K + F EY+ E A A LN + LRV
Sbjct: 230 VEESEKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRV 278
>At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q10572 Sex determination
protein fox-1 (Feminizing locus on X protein 1)
{Caenorhabditis elegans}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 33.1 bits (72), Expect = 0.13
Identities = 18/75 (24%), Positives = 36/75 (48%)
Frame = +1
Query: 127 KEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFC 306
K+K+ + + R +++ N+P+ T E D+F + ++ ++ T KG F
Sbjct: 7 KDKQNPRLPPEVTRLLYICNLPFSITSEDTYDLFGRYSTIRQVRIGCEKGT---KGTAFV 63
Query: 307 EYKDQETALSAMRNL 351
Y+D A A+ +L
Sbjct: 64 VYEDIYDAKKAVDHL 78
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 32.7 bits (71), Expect = 0.18
Identities = 20/86 (23%), Positives = 43/86 (50%)
Frame = +1
Query: 115 MDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKG 294
+D S+ Q + + S++V ++P+ A + L+ F + G + + + + G
Sbjct: 303 VDASENGHNQEAVAEGT-SIYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQRGLGYP 361
Query: 295 YGFCEYKDQETALSAMRNLNGYEIGG 372
YGF E+++ + A A+ + +IGG
Sbjct: 362 YGFVEFEEADAAHRAI-EASPVKIGG 386
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 32.7 bits (71), Expect = 0.18
Identities = 22/94 (23%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Frame = +1
Query: 121 KSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSE----VGPVLSFKLVFDRETGKP 288
K K ++ + D R+VF+GN+P++ +E++ +F+ + + +++ D
Sbjct: 269 KQKGHDDTHLYDPK-RTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIG 327
Query: 289 KGYGFCEYKDQETALSAMRNLNGY-EIGGRSLRV 387
KG + +K +E A ++ GY ++ R LR+
Sbjct: 328 KGIAYVLFKTREAANLVLK--KGYLKLRERELRI 359
Score = 32.3 bits (70), Expect = 0.23
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 16/117 (13%)
Frame = +1
Query: 118 DKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFK-----LVFDRETG 282
D KE K +R+VFVGN+P + ++ + FS+ G V S + +V + T
Sbjct: 155 DTMVSKEGFDDESKLLRTVFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVPIVDSKRTR 214
Query: 283 K---------PKGYGFCEYKDQETALSAMRNL--NGYEIGGRSLRVDNACTEKSRME 420
K K Y ET SA +L N I G +RVD AC + + +
Sbjct: 215 KGAIMLKQINEKASSVHAYVVFETEQSAAASLAHNMSLIDGNHVRVDRACPPRKKQK 271
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 32.7 bits (71), Expect = 0.18
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +1
Query: 154 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVF---DRETGKPKGYGFCEYKDQE 324
D +++VGN+ + E L F GP+ S K+++ D E + + GF + ++
Sbjct: 175 DPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRA 234
Query: 325 TALSAMRNLNGYEIGGRSLRV 387
+A + G + L++
Sbjct: 235 DGQAAKDEMQGIIVYEYELKI 255
>At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing
protein predicted proteins - Arabidopsis thaliana
Length = 259
Score = 31.5 bits (68), Expect = 0.41
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +1
Query: 151 MDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGY-GFCEYKDQET 327
M +RSV VGN+ ATE +K+ FS G V S D ++ + Y F E + ET
Sbjct: 1 MASQVRSVKVGNLSSGATEHDIKEFFSFSGEVES----IDIQSNEHSAYVTFKETQGAET 56
Query: 328 ALSAMRNLNGYEIGGRSLRVDNA 396
A+ L+G I +S+ ++ A
Sbjct: 57 AVL----LSGASIADQSVIIELA 75
>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 422
Score = 30.7 bits (66), Expect = 0.71
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 127 KEKEEQSIMDKSM-RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGF 303
K+ +SI ++ S+FV N+P +AT E+L + F G + + K GF
Sbjct: 261 KQASAESIKPQAQGSSIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKKNCIGF 320
Query: 304 CEYKDQE 324
+++ E
Sbjct: 321 VAFENGE 327
>At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to SP|P52597
Heterogeneous nuclear ribonucleoprotein F (hnRNP F)
{Homo sapiens}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 350
Score = 30.3 bits (65), Expect = 0.94
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 187 IPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAM 342
+P+ A +E + D F + F V G+P G F E+++ E + +AM
Sbjct: 269 LPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRPTGEAFVEFRNAEDSRAAM 320
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 274 ETGKPKGYGFCEYKDQETALSAMRNLNG 357
E + +G GF +Y +ETA++A+ LNG
Sbjct: 4 EYRQSRGCGFVKYSSKETAMAAIDGLNG 31
>At3g23710.1 68416.m02981 chloroplast inner membrane import protein
Tic22, putative similar to Tic22 [Pisum sativum]
gi|3769671|gb|AAC64606; contains Pfam domain PF04278:
Tic22-like family
Length = 313
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 196 EATEEKLKDI--FSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLN 354
+A EE+L + ++ F LV +GK G FC+ +D ET L M++++
Sbjct: 113 DAIEERLAGVPVYALSNSNEEFVLVSGTSSGKSLGLLFCKEEDAETLLKEMKSMD 167
>At5g53180.1 68418.m06611 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 429
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 184 NIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 333
N+P+E TEE+L ++ G V++ K G + F E++D A+
Sbjct: 24 NLPWECTEEELIELGKPFGTVVNTKC----NVGANRNQAFIEFEDLNQAI 69
>At5g02950.1 68418.m00238 PWWP domain-containing protein predicted
protein, Arabidopsis thaliana
Length = 632
Score = 28.7 bits (61), Expect = 2.9
Identities = 21/78 (26%), Positives = 37/78 (47%)
Frame = +1
Query: 181 GNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLNGY 360
G++P +EEKL +IF GP+ K + GK F +D +TA S+ + +
Sbjct: 557 GSVP---SEEKLNEIFKRYGPLHESKTKVTMK-GKRAKVVFKRGEDAKTAFSSAGKYSIF 612
Query: 361 EIGGRSLRVDNACTEKSR 414
S R++ C ++ +
Sbjct: 613 GPSLLSYRLEYVCPKRKK 630
>At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 204
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 166 RSVFVGNIPYEATEEKLKDIFSEVGPV 246
+++FV + YE++E K+K F GP+
Sbjct: 138 KTLFVSRLNYESSESKIKREFESYGPI 164
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 28.3 bits (60), Expect = 3.8
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = +1
Query: 169 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 348
S+ + N+ + L+ IF G V K V RET + F E+ D A A+R
Sbjct: 184 SLVIMNLEPTVSSSTLRHIFQVYGEV---KQV--RETPCKREQRFVEFFDVRDAAKALRV 238
Query: 349 LNGYEIGGRSL 381
+NG I G+ +
Sbjct: 239 MNGKVISGKPM 249
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/75 (17%), Positives = 38/75 (50%)
Frame = +1
Query: 118 DKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGY 297
++ ++ +E+ + SVF+ +P + T ++D + GP+ + ++ ++G +
Sbjct: 729 EEQRKIQEEEGTESHEASVFLKRLPLDVTFALIEDALKKFGPINAISII---KSGPLYKF 785
Query: 298 GFCEYKDQETALSAM 342
F +++ + A A+
Sbjct: 786 AFVDFEKADVANRAI 800
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/56 (21%), Positives = 27/56 (48%)
Frame = +1
Query: 178 VGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 345
V ++P AT ++ +F + GP+ ++ Y F E+++ + A A++
Sbjct: 554 VKDLPPNATVALVESVFKQFGPIKKGRIRVINPANSNYWYAFVEFEEADAAKRAIQ 609
>At3g52980.1 68416.m05840 RNA recognition motif (RRM)-containing
protein predicted proteins, Arabidopsis thaliana
Length = 381
Score = 27.1 bits (57), Expect = 8.7
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +1
Query: 130 EKEEQSIMDKSMRSVFVGNIPYEA--TEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGF 303
E+ E + R V++ P E+ TE + + FSEVGPV ++ ++ + YGF
Sbjct: 293 ERSEHGAILAGSRQVYL-TFPAESSFTEHDVSNYFSEVGPVEDVRIPCQQK----RMYGF 347
Query: 304 CEYKDQET 327
+ ET
Sbjct: 348 VTFVYMET 355
>At3g26050.1 68416.m03244 expressed protein
Length = 533
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 275 SRSKTSLKDKTGPTSLNMSFNFSS 204
S K K ++GP+S++MS NF+S
Sbjct: 253 SAVKADKKKRSGPSSVHMSLNFAS 276
>At2g34930.1 68415.m04288 disease resistance family protein contains
leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2.1 [Lycopersicon
pimpinellifolium] gi|1184075|gb|AAC15779
Length = 905
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 242 PSCLSNLSSIAKPVNPKV-MGFVNIKTRKR 328
P C+SNL++IA+ N +V V I TR R
Sbjct: 752 PKCISNLTAIARGTNNEVFQNLVFIVTRAR 781
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.132 0.370
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,171,742
Number of Sequences: 28952
Number of extensions: 217061
Number of successful extensions: 976
Number of sequences better than 10.0: 219
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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