Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10g23
(594 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0239 + 42222024-42222133,42222220-42222301,42222396-422224... 37 0.011
07_03_0982 + 23116343-23117089,23117227-23117313,23117424-231175... 33 0.23
09_06_0358 - 22504716-22505588 31 0.52
02_02_0119 + 6978697-6979045,6979519-6979581,6979757-6979866,697... 31 0.92
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 31 0.92
06_03_1450 + 30246702-30247346,30248603-30248689,30248789-302489... 30 1.2
01_02_0028 - 10340253-10340619,10341110-10341615 30 1.6
11_01_0727 - 6010537-6010548,6011029-6011606,6011709-6011774,601... 29 2.1
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 29 2.1
05_04_0173 + 18724367-18724476,18724570-18724651,18724750-187248... 29 2.1
12_01_0239 - 1793612-1793716,1793808-1793826,1794424-1794599,179... 29 2.8
11_01_0242 - 1862106-1862210,1862302-1862320,1863082-1863257,186... 29 2.8
01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982 29 2.8
05_05_0164 - 22847641-22847834,22848033-22848288,22848634-22849266 29 3.7
04_04_0252 - 23935615-23936159,23936606-23936745,23936846-23937381 29 3.7
01_06_1793 - 39916024-39916824 29 3.7
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452... 28 4.9
04_03_0985 - 21438036-21438116,21438373-21438495,21438903-214389... 28 4.9
02_05_0935 - 32859353-32859360,32859476-32860438,32860535-32860757 28 4.9
02_05_0592 - 30210219-30210757,30210898-30210919 28 4.9
02_04_0022 - 18992517-18993033,18993119-18993360,18993535-189939... 28 4.9
01_07_0034 - 40625755-40626268,40626358-40626599,40627034-406274... 28 4.9
10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841 28 6.5
01_07_0033 - 40619145-40619658,40619761-40620002,40620178-406205... 28 6.5
02_01_0580 + 4303020-4303211,4303838-4303879,4304538-4304646,430... 27 8.5
01_07_0082 - 40965947-40967023 27 8.5
>01_07_0239 +
42222024-42222133,42222220-42222301,42222396-42222486,
42222702-42222814,42222912-42222984,42223080-42223178,
42223201-42223406,42223693-42223832,42223912-42223969,
42224067-42224137,42224207-42224741
Length = 525
Score = 37.1 bits (82), Expect = 0.011
Identities = 24/77 (31%), Positives = 34/77 (44%)
Frame = +1
Query: 97 GAPSVLPDTKGSLRNGQDYFRDKRSQYGTYYTSPCGGASSAPIPTYPSAGYHGQAPAQAG 276
G P+ P +G + G Y ++ Q G Y + P P P YP G G + G
Sbjct: 427 GGPNRYP--QGGNQGG--YNPNRGGQGGGYGSGPYPQQGRGP-PPYPGGGMGGAGGPRGG 481
Query: 277 YGTNYVYGGPHYRLADP 327
G+ Y GGP+Y+ P
Sbjct: 482 GGSGYGVGGPNYQQGGP 498
>07_03_0982 +
23116343-23117089,23117227-23117313,23117424-23117555,
23118135-23118269,23118644-23118709,23118797-23118907,
23119237-23119329,23119555-23119659,23119752-23119829
Length = 517
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +1
Query: 208 ASSAPIPTYPSAGYHGQAPAQAGYGTNYVYGG--PHYRLADPAEFDPE 345
AS A P Y GY Q P+ Y Y G P Y +PA + PE
Sbjct: 44 ASYASAPPYSVGGYSDQPPSAPSYAPPPQYAGYAPPYNNPNPAPYPPE 91
>09_06_0358 - 22504716-22505588
Length = 290
Score = 31.5 bits (68), Expect = 0.52
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 115 PDTKGSLRNGQDYFRDKRSQYG-TYYTSPCGGASSAPIPTYPSAGYHGQAPAQAGYGT 285
P + S R+ Y YG Y +P S+AP YPSA Y G AP Q YG+
Sbjct: 151 PYHQQSSRDPYAYGNTTTGGYGYAYGGAPPAPYSAAPPAGYPSA-YGGAAPTQPAYGS 207
>02_02_0119 +
6978697-6979045,6979519-6979581,6979757-6979866,
6979969-6980154,6980266-6980361,6980493-6980564,
6980798-6980909,6982448-6982534,6982680-6983872
Length = 755
Score = 30.7 bits (66), Expect = 0.92
Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = +1
Query: 64 YFSITTTTMVVGAPSV-LPDTKGSLRNGQDYFRDKRSQYGTYYTSP-CGGASSAPIP-TY 234
Y S +T APS G GQ + Y + P ASS P+ +
Sbjct: 543 YGSAANSTQDGSAPSYGAQGVAGQASPGQQTSTPAAGSHPGYSSQPPTSAASSYPVQGSA 602
Query: 235 PSAGYHGQAPAQAGYGT 285
P +GY G P Q GYGT
Sbjct: 603 PQSGY-GAPPPQTGYGT 618
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 30.7 bits (66), Expect = 0.92
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 172 QYGTYYTSPCGGASSAPIPTYPSAGYHGQAPAQAGYGTNYVY-GGPHYR 315
Q + Y P G +S P P+Y + GY Q +G+ +Y Y G P +R
Sbjct: 424 QNQSMYEPPVGRPNSGPPPSYGAGGYGPQ--GGSGFSESYGYSGSPSHR 470
>06_03_1450 +
30246702-30247346,30248603-30248689,30248789-30248920,
30249016-30249162,30250375-30250440,30250519-30250629,
30251551-30251584,30251667-30251743,30251829-30251906
Length = 458
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +1
Query: 172 QYGTYYTSPCGGASSAPIPTYPSAGYHGQAPAQA-GYGTNYVYGGPHYRLADPAEFDP 342
+Y YY P +SAP+ TYPSA P A Y Y ADP ++ P
Sbjct: 6 EYSPYY-QPYPSPTSAPLATYPSASAPPYTPYPATDYAAPAAYPTYPPPPADPPQYAP 62
>01_02_0028 - 10340253-10340619,10341110-10341615
Length = 290
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 226 PTYPSAGYHGQAPAQAGYGTNY 291
P YP YHG+ P Q + NY
Sbjct: 152 PCYPGKSYHGRGPIQISWNFNY 173
>11_01_0727 -
6010537-6010548,6011029-6011606,6011709-6011774,
6011867-6011964,6013238-6013608
Length = 374
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = +1
Query: 142 GQDYFRDKRSQYGTYYTSPCGGASSAP-IPTYPSAGYHGQAPAQAGYGTNYVYG-GPHY 312
G D+ S GTY P G + P PTYP + G GYG N G GP Y
Sbjct: 290 GGDFRPGGPSAPGTYGQPPAPGNYAQPHPPTYPGSN-QGAPGVNPGYGGNNRQGPGPAY 347
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Frame = +1
Query: 187 YTSPCGGASSAPIPTY-PSAGYHGQAPAQAGYGTNYVYGGPHYRLADPAEFDPEMLGYS 360
YT GG S P Y P GY +P+ + +Y P Y P + P YS
Sbjct: 1543 YTPSSGGGYSPSSPVYSPGPGYSPTSPSYSPASPSYSPTSPSYTPGSPT-YSPTSPSYS 1600
>05_04_0173 +
18724367-18724476,18724570-18724651,18724750-18724840,
18725060-18725172,18725270-18725342,18725445-18725565,
18725665-18725782,18726609-18726748,18726824-18726881,
18727007-18727077,18727181-18727733
Length = 509
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 178 GTYYTSPCGGASSAPIPTYPSAGYHGQAPAQAGYGTNYVYGGPHY 312
G+Y +P P P YP +G G + G G Y GG +Y
Sbjct: 432 GSYGNAPYPQQGRGPPPPYPGSGMAGTGGPRGGVGGGY-GGGSNY 475
>12_01_0239 -
1793612-1793716,1793808-1793826,1794424-1794599,
1794701-1794747,1795760-1796291
Length = 292
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 202 GGASSAPIPTYPSAGYHGQAPAQAGYGTNYVYGGP 306
G SS+ P Y G +G P+ YG+ YG P
Sbjct: 46 GKTSSSSAPYYGGGGGYGAPPSTQPYGSGGGYGAP 80
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +1
Query: 202 GGASSAPIPTYP-SAGYHGQAPAQAGYGTNYVYGGPHYRLADPAEFDP 342
GG AP + P A Y P+ A YG YG P L P+ F P
Sbjct: 74 GGGYGAPPSSQPYGAPYGAPPPSSAPYGAPGGYGSPFASLV-PSAFPP 120
>11_01_0242 -
1862106-1862210,1862302-1862320,1863082-1863257,
1863359-1863405,1864443-1865022
Length = 308
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 202 GGASSAPIPTYPSAGYHGQAPAQAGYGTNYVYGGP 306
G SS+ P Y G +G P+ YG+ YG P
Sbjct: 46 GKTSSSSAPYYGGGGGYGAPPSTQPYGSGGGYGAP 80
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +1
Query: 202 GGASSAPIPTYP-SAGYHGQAPAQAGYGTNYVYGGPHYRLADPAEFDP 342
GG AP + P A Y P+ A YG YG P L P+ F P
Sbjct: 90 GGGYGAPPSSQPYGAPYGAPPPSSAPYGAPGGYGSPFASLV-PSAFPP 136
>01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982
Length = 301
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 100 APSVLPDTKGSLRNGQDYFRDKRSQYGTYYTSPCGGASSAPIPTYPSAGY-HGQAPA 267
+P V P G G YG+ ++P GG SS P P++ Y G APA
Sbjct: 119 SPPVTPSPGGGYGGGSPAPSHGGGAYGSSPSTPSGGGSS-PTPSHGGGAYGGGGAPA 174
>05_05_0164 - 22847641-22847834,22848033-22848288,22848634-22849266
Length = 360
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +1
Query: 196 PCGGASSAPIPTYPSAGYHGQAPAQAGYGTNYVYGGPHYRLA 321
PC ASSAP P+A HG PA +G + + G + RLA
Sbjct: 23 PCAAASSAPA---PAAAGHG-VPAVFAFGDSTLDPGNNNRLA 60
>04_04_0252 - 23935615-23936159,23936606-23936745,23936846-23937381
Length = 406
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 175 YGTYYTSPCGGASSAPIPTYPSAGYHGQAPAQAGYGTN 288
Y Y P G + A +P YPSA Q P +G T+
Sbjct: 323 YAGYPGYPVAGYTQAALPGYPSAYAAPQQPISSGVATD 360
>01_06_1793 - 39916024-39916824
Length = 266
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 202 GGASSAPIPTYPSAGYHGQAPAQAGYGTNYVYGGP 306
GG+S + G G APA GYG+N +G P
Sbjct: 163 GGSSYGNGGAIVAGGGGGSAPASYGYGSNSGWGAP 197
>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
4521632-4521723,4522226-4522342,4522641-4522704,
4523175-4523228,4523579-4523666,4523788-4524023,
4525258-4525478,4525634-4525827,4525938-4525995,
4526771-4526824,4526851-4527473,4527580-4527640,
4528417-4528590,4528803-4529063,4529201-4529320,
4529388-4530022,4530062-4530828,4530915-4531012,
4531101-4531155,4531230-4531318
Length = 2010
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 367 PYPNI--QAFLDQTQPGLLVDSEVLRRRSLFHIPPGQVPGHG 248
P+P + L+ PG ++ + ++ ++ PG +PGHG
Sbjct: 1500 PFPRLGSSGMLNMVSPGNMLPNNGQGMQNTVNVHPGTIPGHG 1541
>04_03_0985 - 21438036-21438116,21438373-21438495,21438903-21438995,
21439176-21439388,21439589-21439687,21440248-21440317,
21442549-21442619,21442817-21442954,21443034-21443132,
21444061-21444144,21444268-21444324,21444594-21444683,
21444886-21445026,21445778-21445882,21445962-21446114,
21446215-21446316,21446404-21446562,21447039-21447222,
21447336-21447418,21447523-21447588,21447736-21447793,
21447903-21448003,21448269-21448355,21449063-21449185,
21449285-21449364,21449857-21450066,21450159-21450270,
21450709-21450927,21451356-21451726,21451866-21451965,
21452544-21452752,21453232-21453337,21453435-21453767
Length = 1439
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Frame = -3
Query: 403 FDAYAAY------VACIGPYPNIQAFLDQTQPGLL 317
F+ YA Y V C G YPN+ A L+ PG L
Sbjct: 1259 FNLYARYSSVVKSVICAGLYPNVAATLEGVDPGAL 1293
>02_05_0935 - 32859353-32859360,32859476-32860438,32860535-32860757
Length = 397
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 193 SPCGGASSAPIPTYPSAGYHGQAPAQAGYGTNY 291
+P +S+P P+Y H AP QA YG Y
Sbjct: 158 APTTTTTSSPAPSYSRPAPHDAAPYQALYGGPY 190
>02_05_0592 - 30210219-30210757,30210898-30210919
Length = 186
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 223 IPTYPSAGYHGQAPAQAGYGTNYVYG 300
IP+ Y G +PA GYG Y YG
Sbjct: 158 IPSRSDDEYSGSSPAIGGYGYGYGYG 183
>02_04_0022 -
18992517-18993033,18993119-18993360,18993535-18993923,
18995447-18995603
Length = 434
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 198 MRRSVFCANSYLPIGWIPW 254
M+RSVFC P+GW PW
Sbjct: 293 MQRSVFCL---CPLGWAPW 308
>01_07_0034 -
40625755-40626268,40626358-40626599,40627034-40627422,
40628119-40628227
Length = 417
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 198 MRRSVFCANSYLPIGWIPW 254
M+RSVFC P+GW PW
Sbjct: 277 MQRSVFCL---CPLGWAPW 292
>10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841
Length = 348
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 178 GTYYTSPCGGASSAPIPTYPSAGYHGQAPAQAGY-GTNYVYGGPHY 312
GT YT GG +SAP Y S ++ A Y G NY GG +Y
Sbjct: 233 GTGYTGGSGGYNSAP-GNYSSDNFNQGGAAPGAYEGANY-GGGNNY 276
>01_07_0033 -
40619145-40619658,40619761-40620002,40620178-40620566,
40621586-40621688
Length = 415
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 198 MRRSVFCANSYLPIGWIPW 254
M+RS+FC P+GW PW
Sbjct: 275 MQRSIFCL---CPLGWAPW 290
>02_01_0580 +
4303020-4303211,4303838-4303879,4304538-4304646,
4304731-4304859,4305002-4305121,4305223-4305343,
4305888-4306044,4306377-4306427,4306573-4306695
Length = 347
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +2
Query: 20 SSCRMCL*WSSTCGFIFQLPLPLWWSVLPRFFPTQRGV*GTGKITS--VTNVRNTGLITR 193
S+C M + S FI + P W +++P F+ T+ G TG + V N L+
Sbjct: 135 STCHMAV--SKNKLFIPGVWGPFWSAMVPEFWLTEGGQSATGALLDYIVENHVAAPLLAN 192
Query: 194 HHAAERL 214
H A++R+
Sbjct: 193 HAASQRI 199
>01_07_0082 - 40965947-40967023
Length = 358
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 175 YGTYYTSPCG-GASSAPIPTYPSAGY-HGQAPAQAGYGTNYVY 297
YGT G G + P P P AGY + P QAGYG Y Y
Sbjct: 252 YGTAPPPQYGYGYPAQPPP--PQAGYGYPPPPPQAGYGGGYGY 292
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,156,100
Number of Sequences: 37544
Number of extensions: 375485
Number of successful extensions: 1285
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1283
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -