Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10g23
(594 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36944| Best HMM Match : 3_5_exonuc (HMM E-Value=6.9) 31 0.70
SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069) 31 0.93
SB_20109| Best HMM Match : I-set (HMM E-Value=2e-05) 29 2.1
SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_50560| Best HMM Match : rve (HMM E-Value=7.2e-15) 28 4.9
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 28 6.5
SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_12491| Best HMM Match : rve (HMM E-Value=1.6e-18) 28 6.5
SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_14805| Best HMM Match : DUF964 (HMM E-Value=0.22) 27 8.6
SB_10632| Best HMM Match : DEP (HMM E-Value=0.78) 27 8.6
>SB_36944| Best HMM Match : 3_5_exonuc (HMM E-Value=6.9)
Length = 227
Score = 31.1 bits (67), Expect = 0.70
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = +1
Query: 202 GGASSAPIPTYPSAGYHGQAPAQAGYGTNYVYGGPHYRLAD 324
G APIP YP G+ G A +GTNY G P Y A+
Sbjct: 179 GDYEPAPIP-YPG-GFIGNAILNGCFGTNYSQGDPCYSPAE 217
>SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -1
Query: 561 HGRSATKQQRHTTSPHVDIRKNSESCRRTRCCWSRH 454
HGRS K RH TS H R + R+R SRH
Sbjct: 94 HGRSRHKTSRHETSRHERSRHETRQHERSRHKTSRH 129
>SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 911
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 178 GTYYTSPCGGASSAPIPTYPSAGYHGQAPAQAG 276
GT+ P GG + P P AGY G P AG
Sbjct: 626 GTHTAPPAGGYPTGQHPPPPPAGYPGYGPPPAG 658
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Frame = +1
Query: 142 GQDYFRDKRSQYGTYYTSPCGGASSAPIPTYPSAGYHGQAPAQAGY-----GTNYVYGGP 306
GQ Y D R+ G +P P +PS GY +P G+ T Y G P
Sbjct: 566 GQTYVPDHRTTGGYPAPTPSYPQPGTYPPPHPSGGYPQPSPPHGGHPHHPPPTGYPGGYP 625
Query: 307 HYRLADPA 330
A PA
Sbjct: 626 GTHTAPPA 633
>SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)
Length = 135
Score = 30.7 bits (66), Expect = 0.93
Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +1
Query: 103 PSVLPDTKGSLRNGQDYFRDKRSQ-YGTYYTSPCGGASSAPIPTYPSAGYHGQAPAQAGY 279
P + P G +GQ Y SQ YG TS G P P PSA + AP AGY
Sbjct: 72 PGIAPGIGGPPPSGQ-YGAPPTSQPYGAPPTSGYPGYQQHPPPPQPSAQSY-NAPPPAGY 129
Query: 280 G 282
G
Sbjct: 130 G 130
>SB_20109| Best HMM Match : I-set (HMM E-Value=2e-05)
Length = 122
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -1
Query: 552 SATKQQRHTTSPHVDIRKNSESCRRTRCCWSRHAIV 445
S+ KQ R VDI + +SC R R WSR +V
Sbjct: 10 SSMKQVRLPEGESVDILCDVKSCPRARVMWSRDGLV 45
>SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1421
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 299 EDLTID*QTRLSLIQKCLDIRIWTNTCNIC 388
++LT D R +I C +IR W + CN C
Sbjct: 1207 DELTYDISDRYWIIAACEEIREWEHECNKC 1236
>SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2286
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +1
Query: 136 RNGQDYFRDKRSQYGTYYTSPCGGASSAPIPTYPSAGYHGQAPAQAGYGTNYVYGGPHYR 315
RNG+ + +R+ + + +P A++ P+P+ P + P +A + + YGG HY
Sbjct: 597 RNGKGHPCHQRTLFRLQWEAP-SQAATPPLPSPPPS-----TPFEAVFADFFDYGGHHYL 650
Query: 316 LA 321
+A
Sbjct: 651 VA 652
>SB_50560| Best HMM Match : rve (HMM E-Value=7.2e-15)
Length = 364
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 208 ASSAPIPTYPSAGYHGQAPAQAGYGTNYVYGGPHY 312
A++ P+PTYP + P +A Y + +GG HY
Sbjct: 186 AATPPLPTYPPS-----TPFEAVYADFFDFGGRHY 215
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 151 YFRDKRSQYGTYYTSPCGGASSAPIPTYPSAGYHGQ-APAQAGY 279
Y + R GT GG S P+ + SAGY G A +GY
Sbjct: 361 YSSESRGYSGTADPDVAGGRGSIPLSSRESAGYGGAGATPYSGY 404
>SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -1
Query: 561 HGRSATKQQRHTTSPHVDIRKNSESCRRTRCCWSRH 454
H RS K RH TS H R + R+R SRH
Sbjct: 54 HERSRHKTSRHETSRHERSRHETRQHERSRHKTSRH 89
>SB_12491| Best HMM Match : rve (HMM E-Value=1.6e-18)
Length = 1106
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 235 PSAGYHGQAPAQAGYGTNYVYGGPHYRL 318
PS G+HG APA G YG + L
Sbjct: 600 PSPGWHGGAPAAPAIGPESFYGDNKFAL 627
>SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 226 PTYPSAGYHGQAPAQ-AGYGTN-YVYGGPHYRLADPA 330
PTYP+ GY +P+Q +GY T + Y DP+
Sbjct: 162 PTYPNMGYPTNSPSQLSGYSTRAFTAEWDPYYTGDPS 198
>SB_14805| Best HMM Match : DUF964 (HMM E-Value=0.22)
Length = 628
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = +1
Query: 100 APSVLPDTKGSLRNGQDY--FRDKRSQYGTYY----TSPCGGASSA 219
A S D K S RN + Y +D R Q G YY ++ CGG S++
Sbjct: 393 AKSKPSDKKSSPRNDRGYRQIQDFRGQVGGYYGHRSSAKCGGVSAS 438
>SB_10632| Best HMM Match : DEP (HMM E-Value=0.78)
Length = 500
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 176 TGLITRHHAAERLLRQFLPTHRLDTMARHLPRRDMEQTTSTEDLTI 313
TGL HH ER L L + R + R D+E T TE++++
Sbjct: 382 TGLELGHHLLERNLLICLGSRRDNQQPSSDSRDDVEYTMDTEEVSV 427
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,376,751
Number of Sequences: 59808
Number of extensions: 405333
Number of successful extensions: 1411
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1407
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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