Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10g23
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    28   0.079
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   3.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   6.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.1  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 27.9 bits (59), Expect = 0.079
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 151 YFRDKRSQYGTYYTSPCGGASSAPIPTYPSAGYHGQAPAQAGYGTNY 291
           +F D  +   +   S  GG SS+P P+ PS+ +   +P   G   NY
Sbjct: 68  WFNDSAAAITSTSPSYPGGGSSSPSPSSPSSFFSSVSPTSLG-SENY 113


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 584 ALRIFPWTTDGVQLNSRGTLHPPTL 510
           AL + P +   + LNS+  L PP +
Sbjct: 451 ALNVQPTSKGRITLNSKDPLDPPVI 475


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 587 CALRIFPWTTDGVQLNSR 534
           C L++  WT DG +++ R
Sbjct: 167 CVLKLGSWTYDGFKVDLR 184


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 587 CALRIFPWTTDGVQLN 540
           C ++   WT DG+Q++
Sbjct: 159 CFMKFGSWTYDGIQID 174


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 587 CALRIFPWTTDGVQL 543
           C L+   WT DG QL
Sbjct: 145 CVLKWASWTYDGYQL 159


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 587 CALRIFPWTTDGVQLNSR 534
           C L+   WT DG +++ R
Sbjct: 167 CVLKFGSWTYDGFKVDLR 184


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 391 AAYVACIGPYPNI 353
           A Y+ C  PYP+I
Sbjct: 214 AFYICCEEPYPDI 226


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -1

Query: 546 TKQQRHTTSPHVDIRKNSESCRR 478
           +++++ TTS   + R+ SE C +
Sbjct: 763 SREEKATTSLEAEKREKSEHCEK 785


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,358
Number of Sequences: 438
Number of extensions: 4029
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)