Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10g23
         (594 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49840.1 68416.m05449 proline-rich family protein contains pr...    33   0.19 
At3g11920.1 68416.m01461 glutaredoxin-related contains INTERPRO ...    31   0.77 
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei...    29   1.8  
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei...    29   1.8  
At3g44880.1 68416.m04835 Rieske [2Fe-2S] domain-containing prote...    29   2.3  
At1g09770.1 68414.m01096 myb family transcription factor contain...    29   2.3  
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ...    29   3.1  
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila...    29   3.1  
At1g70985.1 68414.m08189 hydroxyproline-rich glycoprotein family...    29   3.1  
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein...    28   4.1  
At3g46800.1 68416.m05080 DC1 domain-containing protein contains ...    27   9.4  
At1g61740.1 68414.m06963 expressed protein contains Pfam profile...    27   9.4  
At1g17600.1 68414.m02173 disease resistance protein (TIR-NBS-LRR...    27   9.4  

>At3g49840.1 68416.m05449 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 606

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
 Frame = +1

Query: 220 PIPTYPSAGY--HGQAPAQAGYGTNYV---YGGPHYRLADPAEF 336
           P P YP AGY   G  P Q GYG  Y    Y  P Y    P ++
Sbjct: 518 PPPQYPQAGYPPAGYPPPQQGYGQGYPAQGYPPPQYPQGHPPQY 561


>At3g11920.1 68416.m01461 glutaredoxin-related contains INTERPRO
           Domain IPR002109, Glutaredoxin (thioltransferase)
          Length = 630

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 63  LFFNYHYHYGGRCSLGSSRHKGEFEERAR 149
           +FFN   H+GG  +L S R+ GEF+ R +
Sbjct: 211 IFFN-EKHFGGLMALNSLRNSGEFDRRVK 238


>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
 Frame = +1

Query: 205 GASSAPIPTYPSAGY---HGQAPAQAGYGTNYVYGGPHY 312
           G   APIP+Y   GY    G     AGYG     GG  Y
Sbjct: 9   GGGGAPIPSYGGDGYGGGGGYGGGDAGYGGRGASGGGSY 47


>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
 Frame = +1

Query: 205 GASSAPIPTYPSAGY---HGQAPAQAGYGTNYVYGGPHY 312
           G   APIP+Y   GY    G     AGYG     GG  Y
Sbjct: 9   GGGGAPIPSYGGDGYGGGGGYGGGDAGYGGRGASGGGSY 47


>At3g44880.1 68416.m04835 Rieske [2Fe-2S] domain-containing protein
           similar to lethal leaf-spot 1 from Zea mays
           [gi:1935909]; contains Pfam PF00355 Rieske [2Fe-2S]
           domain
          Length = 537

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 62  FIFQLPLPLWWSVLPRFF 115
           F F +P P WW V+PR++
Sbjct: 347 FQFSVPGPAWWQVVPRWY 364


>At1g09770.1 68414.m01096 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 844

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 331 QPGLLVDSEVLRRRSLFHIPPGQVPGHGIQPMGR 230
           Q   L D EV+R+RS   +PP Q+  H ++ + +
Sbjct: 279 QANKLNDPEVVRKRSKLMLPPPQISDHELEEIAK 312


>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
           protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 423

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 29/90 (32%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
 Frame = +1

Query: 115 PDTKGSLRNGQDYFRDKRSQ----YGTYYTSPCGGASSAPIPTYPSAGYH--GQAPAQAG 276
           P    S+      F D RS     YG  Y    GG    P   Y S G +  G++    G
Sbjct: 208 PKKPNSVTTPSKRFGDSRSNFGGGYGDGYGGGHGGGYGGPGGPYKSGGGYGGGRSGGYGG 267

Query: 277 YGTNY-VYGGPHY-RLADPAEFDPEMLGYS 360
           YG  +  YGG  Y     P   +P  LGYS
Sbjct: 268 YGGEFGGYGGGGYGGGVGPYRGEP-ALGYS 296


>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
           to RNA-binding protein GB:S46286 from [Nicotiana
           sylvestris]
          Length = 289

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +1

Query: 187 YTSPCGGASSAPIPTYPSAGYHGQAPAQAGYGTNYVYGG 303
           Y +P GG          ++ Y G A    GYG N  YGG
Sbjct: 135 YGAPAGGYGGGAGGYGGNSSYSGNAGGGGGYGGNSSYGG 173


>At1g70985.1 68414.m08189 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 135

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +1

Query: 169 SQYGTYYTSPCG---GASSAPIPTYPSAGYHGQAPAQAGY 279
           +Q   YY  P G     SS+ +P YPS  Y+G  P+  GY
Sbjct: 45  TQPAGYYPQPTGYYPPPSSSNVPNYPSPPYYGGNPS-GGY 83


>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative 
          Length = 404

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 235 PSAGYHGQAPAQAGYGT-NYVYGGPHYRLADPAEF 336
           P +   GQA A AGYG+  Y YGG       P+ +
Sbjct: 316 PGSAVMGQAGASAGYGSQGYGYGGNDSSYGTPSAY 350


>At3g46800.1 68416.m05080 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 682

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
 Frame = +2

Query: 239 RLDTMARHLPRRDMEQTTSTEDLTI-------D*QTRLSLIQKCLDIRIWTNTCNICSIC 397
           RLD     LPR+ M Q      L +       D Q    + +  +D + W  TCN+C I 
Sbjct: 546 RLDFRCATLPRKVMNQRYDDHPLYLSYGENKEDGQLWCEVCETKVDPKEWLYTCNLCGII 605

Query: 398 I 400
           +
Sbjct: 606 L 606


>At1g61740.1 68414.m06963 expressed protein contains Pfam profile:
           PF01925 domain of unknown function DUF81; identical to
           cDNA hypothetical protein, partial GI:4079631
          Length = 458

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 493 GVFPNVNVGGCSVPLLFSCTPSVVQGKILNAQ 588
           G+ P V    CS  +LFS T S +Q  +L  +
Sbjct: 352 GIAPEVTAATCSFMVLFSSTMSAIQYLLLGME 383


>At1g17600.1 68414.m02173 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1025

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 197 HAAERLLRQFLPTHRLD-TMARHLPRR-DMEQTTSTEDLTID*QTRLSLIQKCLDIR 361
           H    L +      RLD T ++HL +  D+   TS E+L ++  TRL  I +C+  R
Sbjct: 642 HVLLYLAQMLKSLKRLDVTGSKHLKQLPDLSSITSLEELLLEQCTRLEGIPECIGKR 698


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,200,944
Number of Sequences: 28952
Number of extensions: 278855
Number of successful extensions: 874
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)