Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10g22
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 181 5e-47
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 181 5e-47
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 30 0.17
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 29 0.30
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 28 0.92
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 27 2.1
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 2.8
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 4.9
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 25 4.9
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 25 8.6
SPCC191.05c |||nucleoside 2-deoxyribosyltransferase |Schizosacch... 25 8.6
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 25 8.6
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 8.6
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 25 8.6
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 181 bits (441), Expect = 5e-47
Identities = 87/135 (64%), Positives = 100/135 (74%)
Frame = +2
Query: 44 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 223
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 224 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 403
TG VYNVT ++GV++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAK
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120
Query: 404 AAGKTVNLKETASSP 448
A GKTV L+ + P
Sbjct: 121 AQGKTVQLRRQPAPP 135
Score = 30.7 bits (66), Expect = 0.13
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 429 KRQPAPPKAAHIVS-GTEKPVLLAPI 503
+RQPAPP AH VS +PV L P+
Sbjct: 129 RRQPAPPATAHFVSTENNEPVTLHPV 154
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 181 bits (441), Expect = 5e-47
Identities = 87/135 (64%), Positives = 100/135 (74%)
Frame = +2
Query: 44 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 223
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 224 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 403
TG VYNVT ++GV++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAK
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120
Query: 404 AAGKTVNLKETASSP 448
A GKTV L+ + P
Sbjct: 121 AQGKTVQLRRQPAPP 135
Score = 30.3 bits (65), Expect = 0.17
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 429 KRQPAPPKAAHIVS-GTEKPVLLAPI 503
+RQPAPP AH VS +PV L P+
Sbjct: 129 RRQPAPPAKAHFVSTENNEPVTLHPV 154
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 30.3 bits (65), Expect = 0.17
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = +3
Query: 303 SASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*KRQPAPPKAAHIVSGTEK 482
SAS S S++S+ S D ++ +R R RKP + +P+ KR P + + K
Sbjct: 56 SASRSPESIASSQSNDSAAIPSYRRKRRKVRKPEI-VKPTLRKRGRKPKNISTLEHDKSK 114
Query: 483 PVL 491
PV+
Sbjct: 115 PVI 117
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 29.5 bits (63), Expect = 0.30
Identities = 25/73 (34%), Positives = 35/73 (47%)
Frame = -1
Query: 469 LTMWAALGGAGCLFQVDGLAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDALRYNP 290
LT + GG C +A SLG Q +L +LSA G M D+ + P
Sbjct: 495 LTSFGGAGGQHCA----AIAKSLGITQ---VLVHKYSSILSAYG---MALADVVSEVQEP 544
Query: 289 SANTLVDNHTESM 251
S+ TL D++TES+
Sbjct: 545 SSFTLDDSNTESI 557
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 27.9 bits (59), Expect = 0.92
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -2
Query: 156 SPTLYTFMYVESGIVPCVRNLRANKSLVPRR*PLEFVIF 40
S L+ F+ + IVPC+ + + ++P R EF+ F
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFLSF 781
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 26.6 bits (56), Expect = 2.1
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = -2
Query: 54 EFVIFEPCVTKLDG 13
EFVIFE C+T+++G
Sbjct: 726 EFVIFEACLTRIEG 739
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 2.8
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +1
Query: 115 YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPW 219
+ L H SW + R+ C +KGY PW
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 4.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 310 DALRYNPSANTLVDNHTES 254
D R N S N ++DNHT++
Sbjct: 29 DPARKNESTNDVIDNHTDT 47
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.4 bits (53), Expect = 4.9
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +3
Query: 342 SADKTSLRESKRMRGY*RKPRLPARPS-T*KRQPAPPKAAHIVSGTEKPVLLAPIP 506
S+ T + + M KPRLP RPS T +P + +S P+ P P
Sbjct: 340 SSPYTHIAPASEMSLIPEKPRLPPRPSHTLSELSSPALTSENLSSKPSPLFPPPPP 395
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +1
Query: 7 SRSVKLCNT-RLEDDELQGLPPRHQGLVRSQVPH 105
S S++ C T R DD + R G +R + PH
Sbjct: 610 SISIQDCETDRANDDTILNNRVRRSGTIREEAPH 643
>SPCC191.05c |||nucleoside 2-deoxyribosyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 211
Score = 24.6 bits (51), Expect = 8.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 415 LAGSLGFLQ*PLILFDSLKEVLSALGV 335
LAG L F + LFD LKE+ GV
Sbjct: 22 LAGDLVFRPNAIELFDELKEICKDAGV 48
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = -1
Query: 238 VHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSS 110
+ + C V H + T+ V N +H++ ERNS+
Sbjct: 83 IASLCFEDVIDTSHVSIKLTLPKCVLRSKNGLHYYAERERNST 125
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 24.6 bits (51), Expect = 8.6
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +3
Query: 324 SMSSTPSADKTSLRE 368
SMSS+P+A +TSLR+
Sbjct: 163 SMSSSPTASRTSLRK 177
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 24.6 bits (51), Expect = 8.6
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Frame = +2
Query: 143 YKVGDIVDIRGNGAVQKGMPHKV------YHGKTGRVY---NVTAHALGVIVNKRVRGRI 295
Y VGD VD+ NG V M ++ + TG+V N + L ++ +R G
Sbjct: 658 YDVGDRVDVMINGTVTSAMVKEISIMSTEFRLLTGKVIQAPNSLLNTLWILNMRRSDGIA 717
Query: 296 IPKRINIR----VEHVKHSKCR-QDFLKRVKEN 379
P +N++ ++ ++ + + DFLK K +
Sbjct: 718 DPVTVNLKFGTTLQQIEQLRIKIIDFLKEEKRD 750
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,504
Number of Sequences: 5004
Number of extensions: 39766
Number of successful extensions: 169
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -