Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10g21
(576 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 118 5e-28
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 58 1e-09
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 49 6e-07
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 45 9e-06
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 35 0.010
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 35 0.010
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 30 0.28
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 30 0.28
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 29 0.64
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 28 0.85
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 27 1.5
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 2.6
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 25 6.0
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 25 6.0
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 7.9
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 25 7.9
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 118 bits (285), Expect = 5e-28
Identities = 59/146 (40%), Positives = 75/146 (51%), Gaps = 13/146 (8%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE--EADRCYRCNG 346
CY C GH ARECT+G + C+ CN+TGH A +C E + CY C
Sbjct: 19 CYNCGENGHQARECTKGSI-------------CYNCNQTGHKASECTEPQQEKTCYACGT 65
Query: 347 TGHIARECAQSPDE---PSCYNCNKTGHIARNCPEGGRES--------ATXTCYNCNKSG 493
GH+ R+C SP+ CY C + GHIAR+C G++S + CY C G
Sbjct: 66 AGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYG 125
Query: 494 HISRNCPDGTKTCYVCGKPGHISREC 571
H +R+C G K CY CGK GH S EC
Sbjct: 126 HQARDCTMGVK-CYSCGKIGHRSFEC 150
Score = 101 bits (243), Expect = 6e-23
Identities = 54/153 (35%), Positives = 73/153 (47%), Gaps = 18/153 (11%)
Frame = +2
Query: 167 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC-----KEEADRC 331
S+CY CN+TGH A ECT+ +Q + C+ C GH RDC + C
Sbjct: 36 SICYNCNQTGHKASECTE----------PQQEKTCYACGTAGHLVRDCPSSPNPRQGAEC 85
Query: 332 YRCNGTGHIARECAQSPDEP-----------SCYNCNKTGHIARNCPEGGRESATXTCYN 478
Y+C GHIAR+C + + +CY C GH AR+C G + CY+
Sbjct: 86 YKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVK------CYS 139
Query: 479 CNKSGHISRNCPDGT--KTCYVCGKPGHISREC 571
C K GH S C + + CY C +PGHI+ C
Sbjct: 140 CGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 99.5 bits (237), Expect = 3e-22
Identities = 44/119 (36%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
Frame = +2
Query: 254 RQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARN 433
R +C+ C GH AR+C + CY CN TGH A EC + E +CY C GH+ R+
Sbjct: 14 RPGPRCYNCGENGHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRD 72
Query: 434 CPEGGRESATXTCYNCNKSGHISRNC-PDGTKT------------CYVCGKPGHISREC 571
CP CY C + GHI+R+C +G ++ CY CG GH +R+C
Sbjct: 73 CPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDC 131
Score = 93.5 bits (222), Expect = 2e-20
Identities = 43/99 (43%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Frame = +2
Query: 143 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDS-GFNRQREKCFKCNRTGHFARDCKEE 319
S P + CYKC R GH AR+C G S G +R C+ C GH ARDC
Sbjct: 75 SSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG 134
Query: 320 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 436
+CY C GH + EC Q+ D CY CN+ GHIA NC
Sbjct: 135 V-KCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 31.9 bits (69), Expect = 0.069
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 155 AMSSSVCYKCNRTGHFARECT 217
A +CYKCN+ GH A CT
Sbjct: 153 ASDGQLCYKCNQPGHIAVNCT 173
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 57.6 bits (133), Expect = 1e-09
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Frame = +2
Query: 254 RQREK-CFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECA-QSPDE-PSCYNCNKT 415
R R+K CF C + GH +DC E D C+RC H C+ + P + C+ C++
Sbjct: 73 RNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHEN 132
Query: 416 GHIARNCPEG--GRESATXTCYNCNKSGHISRNCPDGTK 526
GH++ C + G C C+ H++++C K
Sbjct: 133 GHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNK 171
Score = 47.2 bits (107), Expect = 2e-06
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +2
Query: 362 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNC----PDGTKT 529
R Q + C+ C + GHI ++CPE + C+ C H C P
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPEA--KDNVSICFRCGSKEHSLNACSKKGPLKFAK 125
Query: 530 CYVCGKPGHISRECD 574
C++C + GH+S +C+
Sbjct: 126 CFICHENGHLSGQCE 140
Score = 47.2 bits (107), Expect = 2e-06
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD----RCYRC 340
C+ C + GH ++C + ++D+ CF+C H C ++ +C+ C
Sbjct: 79 CFACRQQGHIVQDCPE----AKDN-----VSICFRCGSKEHSLNACSKKGPLKFAKCFIC 129
Query: 341 NGTGHIARECAQSPD--EPS---CYNCNKTGHIARNCPEGGRESAT 463
+ GH++ +C Q+P P C C+ H+A++C + ++ +
Sbjct: 130 HENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDDVS 175
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = +2
Query: 167 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE-------EAD 325
S+C++C H C++ G + + KCF C+ GH + C++ +
Sbjct: 100 SICFRCGSKEHSLNACSKKGPL--------KFAKCFICHENGHLSGQCEQNPKGLYPKGG 151
Query: 326 RCYRCNGTGHIARECAQ 376
C C+ H+A++C Q
Sbjct: 152 CCKFCSSVHHLAKDCDQ 168
Score = 30.3 bits (65), Expect = 0.21
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +2
Query: 143 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE 316
SK + + C+ C+ GH + +C Q G + C C+ H A+DC +
Sbjct: 116 SKKGPLKFAKCFICHENGHLSGQCEQ-----NPKGLYPKGGCCKFCSSVHHLAKDCDQ 168
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 48.8 bits (111), Expect = 6e-07
Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Frame = +2
Query: 281 NRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNK-TGHIARNCPEGGRES 457
+R +F D E+ C+ C G GHI+++C C C HI+ CP
Sbjct: 74 SRGRYFGSD-PSESIVCHNCKGNGHISKDC----PHVLCTTCGAIDDHISVRCP------ 122
Query: 458 ATXTCYNCNKSGHISRNCPD----GTKTCYVCGKPGHISREC 571
T C NC GHI+ C + G + C C H S C
Sbjct: 123 WTKKCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTC 164
Score = 40.3 bits (90), Expect = 2e-04
Identities = 32/130 (24%), Positives = 46/130 (35%), Gaps = 6/130 (4%)
Frame = +2
Query: 164 SSVCYKCNRTGHFAREC------TQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 325
S VC+ C GH +++C T G + S +KC C GH A C E
Sbjct: 86 SIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRK 145
Query: 326 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISR 505
R R T H + + Y K + + E CYNC H
Sbjct: 146 RGPRVCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSE-----VRKFCYNCASDEHFGD 200
Query: 506 NCPDGTKTCY 535
+C +++ Y
Sbjct: 201 DCTLPSRSNY 210
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 44.8 bits (101), Expect = 9e-06
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 395 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCP 514
C NC GH +CPE + C +C GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = +2
Query: 449 RESATXTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISREC 571
R+ C NC GH +CP+ C CG GHI+R+C
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDC 349
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Frame = +2
Query: 257 QREKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEP 391
+ + C C GH DC E + C C GHIAR+C +P
Sbjct: 307 ENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +2
Query: 164 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 310
+ VC C GH +C + R + + C C GH ARDC
Sbjct: 308 NQVCQNCGNVGHRRFDCPE-----RIN--HTMNIVCRHCGSIGHIARDC 349
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 34.7 bits (76), Expect = 0.010
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 494 HISRNCPDGTKTCYVCGKPGHISREC 571
H + CP TCY CGK H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 27.5 bits (58), Expect = 1.5
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 167 SVCYKCNRTGHFAREC 214
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.0
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +2
Query: 293 HFARDCKEEADRCYRCNGTGHIAREC 370
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 7.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 467 TCYNCNKSGHISRNC 511
TCY C K+ H R C
Sbjct: 1805 TCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 7.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 269 CFKCNRTGHFARDCK 313
C+KC + H R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 34.7 bits (76), Expect = 0.010
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 494 HISRNCPDGTKTCYVCGKPGHISREC 571
H + CP TCY CGK H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 27.5 bits (58), Expect = 1.5
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 167 SVCYKCNRTGHFAREC 214
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.0
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +2
Query: 293 HFARDCKEEADRCYRCNGTGHIAREC 370
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 7.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 467 TCYNCNKSGHISRNC 511
TCY C K+ H R C
Sbjct: 1805 TCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 7.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 269 CFKCNRTGHFARDCK 313
C+KC + H R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 29.9 bits (64), Expect = 0.28
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 374 QSPDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCN-KSGHISRNCPDGTKTCYVCG 544
++ ++P+ N + N + T TC NC ++ + R PDG C CG
Sbjct: 603 KNAEKPTVSNAAEDKKGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQPLCNACG 660
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 29.9 bits (64), Expect = 0.28
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = +2
Query: 431 NCPEGGRESATXTCYN----CNKSGHISRNCPDGTKTCYVC 541
+CP+G E T C+N C +G+IS P VC
Sbjct: 66 DCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVC 106
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 28.7 bits (61), Expect = 0.64
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 149 PIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFAR 304
P A +V K N GH E G V +S + K + +R G F+R
Sbjct: 384 PKAAPKAVSQKTNVDGHRNHEAKHGNTVQNESKSQKSSNKEGRSSRGGFFSR 435
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 28.3 bits (60), Expect = 0.85
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 446 GRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKP 550
GR+ T C NC + GH+ N K C + G+P
Sbjct: 939 GRKPTTRKCSNCGQVGHMKTN-----KICPLFGRP 968
Score = 25.8 bits (54), Expect = 4.5
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +2
Query: 374 QSPDEPSCYNCNKTGHIARN--CPEGGR 451
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 1.5
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 251 NRQREKCFKCNRTGHFARDCKEEA 322
+RQ KC +C RT + +++C+ +A
Sbjct: 492 SRQFAKCRRCRRTKYCSKECQHQA 515
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +2
Query: 269 CFKCNRTGHFARDCKEEADRCY----RCNGTGHIARECAQSPDEPS 394
C++C + GH+ + C AD Y R T I R ++ + P+
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKNVERPA 230
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = +2
Query: 362 RECAQSPDEPS-----CYNCNKTGHIARNCP 439
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 26.2 bits (55), Expect = 3.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 470 CYNCNKSGHISRNCPDGTKTCYVCGKP 550
CY C + GH + CP Y GKP
Sbjct: 185 CYRCGQKGHWIQACPTNADPNY-DGKP 210
Score = 25.4 bits (53), Expect = 6.0
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +2
Query: 170 VCYKCNRTGHFAREC 214
+CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 6.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 261 VRSASSATAQDTLRGIARKRLTVA 332
VRSA S+ Q T R +A+ +TVA
Sbjct: 50 VRSARSSMEQPTFRPVAKNSVTVA 73
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 25.4 bits (53), Expect = 6.0
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = -2
Query: 530 TSWC-RRDSCGRCGRTCCSYSRXASQTPAPPRDSSVRCGPSCCSCNMTARPGSVRTRALC 354
+S C ++DS +CCS + + + P S CCS T+ +
Sbjct: 223 SSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQE-KKGCCSTEKTSCCSQEKKSCCT 281
Query: 353 AQCRYICSNGQPLPC 309
++ CSNG+ C
Sbjct: 282 SEKPSCCSNGKSTVC 296
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.0 bits (52), Expect = 7.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 468 VCVADSRPPSGQFRAMWP 415
V ++D RPP + RA WP
Sbjct: 302 VSISDYRPPKKRKRAAWP 319
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +2
Query: 248 FNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 346
F CFKC + F K+E Y C+G
Sbjct: 257 FAEDLSMCFKCVKKIQFKTKIKDELYAVYFCSG 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,102,588
Number of Sequences: 5004
Number of extensions: 39545
Number of successful extensions: 195
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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