Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10g21
(576 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 111 4e-25
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 108 3e-24
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 97 6e-21
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 81 5e-16
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 79 2e-15
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 65 3e-11
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 62 3e-10
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 54 7e-08
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 51 6e-07
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 51 6e-07
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 51 6e-07
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 51 6e-07
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 51 6e-07
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 50 8e-07
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 48 3e-06
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 48 3e-06
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein... 40 0.001
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 39 0.003
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 39 0.003
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 38 0.004
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.004
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.004
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 38 0.005
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 37 0.008
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 36 0.019
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.026
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 35 0.034
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 35 0.045
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 33 0.10
At4g19130.1 68417.m02823 replication protein-related similar to ... 33 0.14
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 33 0.14
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 33 0.18
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 33 0.18
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 32 0.32
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.42
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 31 0.55
At3g31950.1 68416.m04046 hypothetical protein 31 0.55
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 31 0.55
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 0.55
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 31 0.73
At5g51300.2 68418.m06360 splicing factor-related contains simila... 30 0.96
At5g51300.1 68418.m06359 splicing factor-related contains simila... 30 0.96
At5g47430.1 68418.m05844 expressed protein 30 0.96
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 30 0.96
At4g17410.1 68417.m02607 expressed protein 30 0.96
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 30 0.96
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 0.96
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 0.96
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ... 30 1.3
At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger) fa... 30 1.3
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 1.3
At5g47390.1 68418.m05840 myb family transcription factor contain... 29 1.7
At3g16350.1 68416.m02068 myb family transcription factor ; conta... 29 1.7
At2g16690.1 68415.m01915 hypothetical protein similar to zinc fi... 29 1.7
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 29 1.7
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 29 2.2
At2g41570.1 68415.m05137 hypothetical protein similar to zinc fi... 29 2.2
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)... 29 2.2
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 29 2.2
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 2.2
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ... 29 2.9
At4g06479.1 68417.m00885 hypothetical protein 29 2.9
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein... 29 2.9
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 29 2.9
At3g07650.2 68416.m00917 zinc finger (B-box type) family protein... 29 2.9
At3g07650.1 68416.m00916 zinc finger (B-box type) family protein... 29 2.9
At2g38560.1 68415.m04737 transcription factor S-II (TFIIS) domai... 29 2.9
At5g61670.2 68418.m07738 expressed protein 28 5.1
At5g61670.1 68418.m07737 expressed protein 28 5.1
At5g48250.1 68418.m05961 zinc finger (B-box type) family protein... 28 5.1
At5g27220.1 68418.m03247 protein transport protein-related low s... 28 5.1
At5g21140.1 68418.m02524 expressed protein 28 5.1
At5g08730.1 68418.m01037 IBR domain-containing protein contains ... 28 5.1
At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ... 28 5.1
At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar ... 28 5.1
At4g06526.1 68417.m00938 hypothetical protein 28 5.1
At1g28210.2 68414.m03463 DNAJ heat shock protein, putative stron... 28 5.1
At1g28210.1 68414.m03462 DNAJ heat shock protein, putative stron... 28 5.1
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein... 27 6.8
At5g07270.1 68418.m00829 ankyrin repeat family protein contains ... 27 6.8
At4g30200.3 68417.m04295 expressed protein contains weak similar... 27 6.8
At4g30200.2 68417.m04294 expressed protein contains weak similar... 27 6.8
At4g30200.1 68417.m04293 expressed protein contains weak similar... 27 6.8
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 27 6.8
At2g22360.1 68415.m02653 DNAJ heat shock family protein similar ... 27 6.8
At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein... 27 9.0
At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein... 27 9.0
At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein... 27 9.0
At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identic... 27 9.0
At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identic... 27 9.0
At4g10630.1 68417.m01737 glutaredoxin family protein contains Pf... 27 9.0
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila... 27 9.0
At1g40080.1 68414.m04737 hypothetical protein member of hypothet... 27 9.0
At1g30660.1 68414.m03749 toprim domain-containing protein contai... 27 9.0
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 111 bits (266), Expect = 4e-25
Identities = 57/164 (34%), Positives = 74/164 (45%), Gaps = 31/164 (18%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA---------- 322
CY C TGHFAR+CT G + + C+ C GH ARDC +++
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 323 ----DRCYRCNGTGHIARECAQ----------SPDEPSCYNCNKTGHIARNCPEGGRESA 460
D CY C GH AR+C Q +CY+C GHIAR+C +
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC--ATKRQP 251
Query: 461 TXTCYNCNKSGHISRNCPD-------GTKTCYVCGKPGHISREC 571
+ CY C SGH++R+C CY CGK GH +REC
Sbjct: 252 SRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 108 bits (260), Expect = 2e-24
Identities = 60/170 (35%), Positives = 78/170 (45%), Gaps = 34/170 (20%)
Frame = +2
Query: 167 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC------------ 310
S CY C GH +++C GG +R E C+ C TGHFARDC
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGAT 159
Query: 311 KEEADRCYRCNGTGHIARECAQSP------------DEPSCYNCNKTGHIARNCPE---- 442
K D CY C GH+AR+C Q CY C GH AR+C +
Sbjct: 160 KGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAA 219
Query: 443 GGRES---ATXTCYNCNKSGHISRNCP---DGTKTCYVCGKPGHISRECD 574
G S + TCY+C GHI+R+C ++ CY CG GH++R+CD
Sbjct: 220 GNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCD 269
Score = 58.8 bits (136), Expect = 2e-09
Identities = 35/97 (36%), Positives = 46/97 (47%), Gaps = 30/97 (30%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQ--------------------GGV--VSRDSGFNRQREK-CFKCN 283
CY C GHFAR+CTQ GGV ++RD RQ + C++C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCG 259
Query: 284 RTGHFARDCKEEA-------DRCYRCNGTGHIARECA 373
+GH ARDC + + CY+C GH AREC+
Sbjct: 260 GSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECS 296
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/50 (44%), Positives = 28/50 (56%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 322
CY+C +GH AR+C Q G SG C+KC + GHFAR+C A
Sbjct: 255 CYQCGGSGHLARDCDQRG-----SGGGGNDNACYKCGKEGHFARECSSVA 299
Score = 35.1 bits (77), Expect = 0.034
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 161 SSSVCYKCNRTGHFARECT 217
+ + CYKC + GHFAREC+
Sbjct: 278 NDNACYKCGKEGHFARECS 296
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 518 GTKTCYVCGKPGHISREC 571
G CY CG+ GHIS++C
Sbjct: 98 GGSGCYNCGELGHISKDC 115
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 108 bits (259), Expect = 3e-24
Identities = 59/168 (35%), Positives = 76/168 (45%), Gaps = 35/168 (20%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK------------- 313
CY C GHFAR+C Q G + G R C+ C GH A+DC+
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGR-PCYSCGEVGHLAKDCRGGSGGNRYGGGGG 190
Query: 314 --EEADRCYRCNGTGHIARECAQS------PDEPSCYNCNKTGHIARNC----PEGGRES 457
D CY C G GH AR+C Q+ +CY C GHIA+ C P GG
Sbjct: 191 RGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGG-GG 249
Query: 458 ATXTCYNCNKSGHISRNCP----------DGTKTCYVCGKPGHISREC 571
CY C +GH++R+C G+ C++CGK GH +REC
Sbjct: 250 GGRACYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 94.3 bits (224), Expect = 5e-20
Identities = 55/177 (31%), Positives = 76/177 (42%), Gaps = 39/177 (22%)
Frame = +2
Query: 161 SSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQ---REKCFKCNRTGHFARDCKEEAD- 325
S C+ C GH A++C G G S G R+ +C+ C GHFARDC++
Sbjct: 92 SGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGG 151
Query: 326 ----------RCYRCNGTGHIAREC-------------AQSPDEPSCYNCNKTGHIARNC 436
CY C GH+A++C + CY C GH AR+C
Sbjct: 152 NSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDC 211
Query: 437 PEGGRES---ATXTCYNCNKSGHISRNCPD--------GTKTCYVCGKPGHISRECD 574
+ G + TCY C GHI++ C G + CY CG GH++R+CD
Sbjct: 212 RQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCD 268
Score = 74.9 bits (176), Expect = 3e-14
Identities = 52/156 (33%), Positives = 64/156 (41%), Gaps = 43/156 (27%)
Frame = +2
Query: 233 SRDSGFNRQREKCFKCNRTGHFARDCKEEA----------------DRCYRCNGTGHIAR 364
SR SG N CF C GH A+DC + CY C GH AR
Sbjct: 89 SRGSGGN-----CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFAR 143
Query: 365 ECAQSPDEPS---------CYNCNKTGHIARNC----------PEGGRESATXTCYNCNK 487
+C QS S CY+C + GH+A++C GGR S CY C
Sbjct: 144 DCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGG 203
Query: 488 SGHISRNCPD--------GTKTCYVCGKPGHISREC 571
GH +R+C G TCY CG GHI++ C
Sbjct: 204 VGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVC 239
Score = 55.6 bits (128), Expect = 2e-08
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Frame = +2
Query: 167 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE--------- 319
S CY C GH A+ CT + S G R C++C TGH ARDC
Sbjct: 224 STCYTCGGVGHIAKVCTSK-IPSGGGGGGRA---CYECGGTGHLARDCDRRGSGSSGGGG 279
Query: 320 -ADRCYRCNGTGHIAREC 370
+++C+ C GH AREC
Sbjct: 280 GSNKCFICGKEGHFAREC 297
Score = 54.8 bits (126), Expect = 4e-08
Identities = 24/50 (48%), Positives = 29/50 (58%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 322
CY+C TGH AR+C + G S SG KCF C + GHFAR+C A
Sbjct: 254 CYECGGTGHLARDCDRRG--SGSSGGGGGSNKCFICGKEGHFARECTSVA 301
Score = 35.9 bits (79), Expect = 0.019
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 16/63 (25%)
Frame = +2
Query: 431 NCPEGGRESATXTCYNCNKSGHISRNCPDGT----------------KTCYVCGKPGHIS 562
N E + C+NC + GH++++C G+ CY+CG GH +
Sbjct: 83 NKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFA 142
Query: 563 REC 571
R+C
Sbjct: 143 RDC 145
Score = 32.3 bits (70), Expect = 0.24
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 164 SSVCYKCNRTGHFARECT 217
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 97.5 bits (232), Expect = 6e-21
Identities = 49/136 (36%), Positives = 69/136 (50%), Gaps = 1/136 (0%)
Frame = +2
Query: 167 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 346
++C C R GHFAR+C+ V C C GH A +C E+ RC+ C
Sbjct: 55 NLCNNCKRPGHFARDCSNVSV-------------CNNCGLPGHIAAECTAES-RCWNCRE 100
Query: 347 TGHIARECAQSPDEPSCYNCNKTGHIARNCPEG-GRESATXTCYNCNKSGHISRNCPDGT 523
GH+A C+ +E C++C K+GH AR+C R C NC K GH++ +C +
Sbjct: 101 PGHVASNCS---NEGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTN-D 156
Query: 524 KTCYVCGKPGHISREC 571
K C C GHI+R+C
Sbjct: 157 KACKNCRTSGHIARDC 172
Score = 85.4 bits (202), Expect = 2e-17
Identities = 43/111 (38%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Frame = +2
Query: 257 QREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 436
Q C C R GHFARDC C C GHIA EC E C+NC + GH+A NC
Sbjct: 53 QGNLCNNCKRPGHFARDCSN-VSVCNNCGLPGHIAAECTA---ESRCWNCREPGHVASNC 108
Query: 437 PEGGRESATXTCYNCNKSGHISRNCPDG------TKTCYVCGKPGHISREC 571
G C++C KSGH +R+C + + C C K GH++ +C
Sbjct: 109 SNEG------ICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADC 153
Score = 79.0 bits (186), Expect = 2e-15
Identities = 47/130 (36%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Frame = +2
Query: 167 SVCYKCNRTGHFARECTQGGVV--SRDSGF---NRQREK-CFKCNRTGHFARDCKEEADR 328
SVC C GH A ECT R+ G N E C C ++GH ARDC R
Sbjct: 74 SVCNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNSDSR 133
Query: 329 ------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKS 490
C C GH+A +C ++ +C NC +GHIAR+C C C+ S
Sbjct: 134 AGDLRLCNNCFKQGHLAADCT---NDKACKNCRTSGHIARDCRN------DPVCNICSIS 184
Query: 491 GHISRNCPDG 520
GH++R+CP G
Sbjct: 185 GHVARHCPKG 194
Score = 78.6 bits (185), Expect = 3e-15
Identities = 49/145 (33%), Positives = 73/145 (50%), Gaps = 8/145 (5%)
Frame = +2
Query: 161 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC 340
+ +C+ C ++GH AR+C+ SR +G R CFK GH A DC + C C
Sbjct: 110 NEGICHSCGKSGHRARDCSNSD--SR-AGDLRLCNNCFK---QGHLAADCTND-KACKNC 162
Query: 341 NGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG---RESATXTCYNCNKSGHISRNC 511
+GHIAR+C ++P C C+ +GH+AR+CP+G + + + G +SR
Sbjct: 163 RTSGHIARDCR---NDPVCNICSISGHVARHCPKGDSNYSDRGSRVRDGGMQRGGLSRMS 219
Query: 512 PD--GTKT---CYVCGKPGHISREC 571
D G C+ CG GH + EC
Sbjct: 220 RDREGVSAMIICHNCGGRGHRAYEC 244
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 170 VCYKCNRTGHFARECTQGGVVSRDSGFNR 256
+C+ C GH A EC V D GF R
Sbjct: 230 ICHNCGGRGHRAYECPSARVA--DRGFRR 256
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 81.0 bits (191), Expect = 5e-16
Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
Frame = +2
Query: 155 AMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQRE---KCFKCNRTGHFARDCKEEAD 325
A + + CYKC + GH+AR+CT V D+G + CFKC + GH++RDC ++
Sbjct: 233 AKTGTPCYKCGKEGHWARDCT----VQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQS- 287
Query: 326 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP--------EGGR---ESATXTC 472
+ + S CY C K GH +R+C + G+ S+T C
Sbjct: 288 -----GNPKYEPGQMKSSSSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDC 342
Query: 473 YNCNKSGHISRNCPDGTKTCYVCGK 547
Y C K+GH SR+C +T GK
Sbjct: 343 YKCGKAGHWSRDCTSPAQTTNTPGK 367
Score = 48.4 bits (110), Expect = 3e-06
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Frame = +2
Query: 389 PSCYNCNKTGHIARNCPEGGRESATXT-CYNCNKSGHISRNCPDGTKT-----------C 532
P+ Y+ K + + G + + T T CY C K GH +R+C + T C
Sbjct: 211 PTSYSVTKNSNFGDSDTRGYQNAKTGTPCYKCGKEGHWARDCTVQSDTGPVKSTSAAGDC 270
Query: 533 YVCGKPGHISREC 571
+ CGKPGH SR+C
Sbjct: 271 FKCGKPGHWSRDC 283
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 79.0 bits (186), Expect = 2e-15
Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Frame = +2
Query: 263 EKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEPS----CYNCNKT 415
E CF C+ H A+ C E+++ C +C GH + C + +E S CYNC T
Sbjct: 74 EGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDT 133
Query: 416 GHIARNCPEGGRESATX--TCYNCNKSGHISRNCPDGTK-------TCYVCGKPGHISRE 568
GH +CP + T +C+ C GHIS+NCP+ C VCG H+ ++
Sbjct: 134 GHSLSHCPYPMEDGGTKFASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKD 193
Query: 569 C 571
C
Sbjct: 194 C 194
Score = 57.2 bits (132), Expect = 7e-09
Identities = 35/119 (29%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Frame = +2
Query: 236 RDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC-NGTGHIARECAQSPDEPSCYNCNK 412
+D ++++ FK + G DR R + T H R P E C+ C+
Sbjct: 30 KDPNKKKKKKSLFKKKKPG-------SSTDRPQRTGSSTRHPLRVPGMKPGE-GCFICHS 81
Query: 413 TGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGT------KTCYVCGKPGHISREC 571
HIA+ CPE C C + GH +NCP+ K CY CG GH C
Sbjct: 82 KTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHC 140
Score = 53.6 bits (123), Expect = 9e-08
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Frame = +2
Query: 164 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD------ 325
+ +C +C R GH + C + + + +++ C+ C TGH C +
Sbjct: 98 NKICLQCRRRGHSLKNCPE------KNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKF 151
Query: 326 -RCYRCNGTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPEG-GRESA 460
C+ C G GHI++ C ++ P C C H+ ++CP+ +ESA
Sbjct: 152 ASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKDCPDKFNQESA 203
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 65.3 bits (152), Expect = 3e-11
Identities = 48/157 (30%), Positives = 61/157 (38%), Gaps = 10/157 (6%)
Frame = +2
Query: 131 AQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 310
A+ F P A S CY C GH + C ++R+ CF C H A+ C
Sbjct: 155 ARYFDPPDAGWVS-CYSCGEQGHTSFNCPTP---------TKRRKPCFICGSLEHGAKQC 204
Query: 311 KEEADRCYRCNGTGHIARECAQSPDEPS----CYNCNKTGHIARNCP-EGGRESATXT-C 472
+ D CY C TGH A++C S C C GH C E +E C
Sbjct: 205 SKGHD-CYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQC 263
Query: 473 YNCNKSGHI----SRNCPDGTKTCYVCGKPGHISREC 571
Y C GH+ N +CY CG+ GH C
Sbjct: 264 YICKSFGHLCCVEPGNSLSWAVSCYRCGQLGHSGLAC 300
Score = 64.5 bits (150), Expect = 5e-11
Identities = 41/142 (28%), Positives = 56/142 (39%), Gaps = 7/142 (4%)
Frame = +2
Query: 122 VLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFA 301
+L E+SK + CY C GH C + G C++C + GH
Sbjct: 247 ILCKYEYSKE-DLKDVQCYICKSFGHLC--CVEPG------NSLSWAVSCYRCGQLGHSG 297
Query: 302 RDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG-------GRESA 460
C + + S + CY C + GH AR CP GRES
Sbjct: 298 LACGRHYEESNENDSA--TPERLFNSREASECYRCGEEGHFARECPNSSSISTSHGRESQ 355
Query: 461 TXTCYNCNKSGHISRNCPDGTK 526
T CY CN SGH +R CP+ ++
Sbjct: 356 TL-CYRCNGSGHFARECPNSSQ 376
Score = 62.5 bits (145), Expect = 2e-10
Identities = 49/171 (28%), Positives = 65/171 (38%), Gaps = 38/171 (22%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR-------C 331
CY C +TGH A++C +G + C +C GH CK E + C
Sbjct: 210 CYICKKTGHRAKDCPD----KYKNG--SKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQC 263
Query: 332 YRCNGTGHIARECAQSPDEP-----SCYNCNKTGHIARNCP---EGGRESATXT------ 469
Y C GH+ C P SCY C + GH C E E+ + T
Sbjct: 264 YICKSFGHL---CCVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEESNENDSATPERLFN 320
Query: 470 ------CYNCNKSGHISRNCPDGTKT-----------CYVCGKPGHISREC 571
CY C + GH +R CP+ + CY C GH +REC
Sbjct: 321 SREASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFAREC 371
Score = 58.8 bits (136), Expect = 2e-09
Identities = 26/77 (33%), Positives = 38/77 (49%)
Frame = +2
Query: 164 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCN 343
+S CY+C GHFAREC +S G + C++CN +GHFAR+C + R
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCNGSGHFARECPNSSQVSKRDR 382
Query: 344 GTGHIARECAQSPDEPS 394
T + + + E S
Sbjct: 383 ETSTTSHKSRKKNKENS 399
Score = 40.3 bits (90), Expect = 9e-04
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 161 SSSVCYKCNRTGHFARECTQGGVVS-RDSGFNRQREKCFKCNR 286
S ++CY+CN +GHFAREC VS RD + K K N+
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNK 396
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 62.1 bits (144), Expect = 3e-10
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Frame = +2
Query: 314 EEADRCYRCNGTGHIARECAQSPDEPS-----CYNCNKTGHIARNCPEGGR-ESATXTCY 475
+EA+ C RC G GH C CY CN GH+ C E G +S T +CY
Sbjct: 23 DEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTVSCY 80
Query: 476 NCNKSGHISRNC-----PDGTKTCYVCGKPGHISREC 571
C + GH C + +C++CG+ GH +C
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQC 117
Score = 58.8 bits (136), Expect = 2e-09
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Frame = +2
Query: 257 QREKCFKCNRTGHFARDCKEEAD-------RCYRCNGTGHIARECAQSPDEP-----SCY 400
+ E C +C GH CK E +CY CN GH+ C P SCY
Sbjct: 24 EAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHL---CCIEPGHTQSWTVSCY 80
Query: 401 NCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTKTCY 535
C + GH C +S + +C+ C + GH C + C+
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVCF 125
Score = 49.6 bits (113), Expect = 1e-06
Identities = 40/143 (27%), Positives = 52/143 (36%), Gaps = 10/143 (6%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 352
CY+C + GH C G DS CF C R GHF C C+ + +
Sbjct: 79 CYRCGQLGHTGLAC---GRHYDDS----VSPSCFICGREGHFEHQCHNSFSVCFPEDSSE 131
Query: 353 HIARECAQSPDEPSCYNCNKT-----GHIARNCPEGGRE-----SATXTCYNCNKSGHIS 502
EC Q PD S T GH CP+ S + N S +
Sbjct: 132 D---EC-QGPDSSSVRFQENTREEEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKST 187
Query: 503 RNCPDGTKTCYVCGKPGHISREC 571
+ + CY C GHI+R+C
Sbjct: 188 SKGRETRRLCYECKGKGHIARDC 210
Score = 42.7 bits (96), Expect = 2e-04
Identities = 32/131 (24%), Positives = 44/131 (33%), Gaps = 10/131 (7%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD-----RCYR 337
CY CN GH C + G C++C + GH C D C+
Sbjct: 55 CYVCNSLGHLC--CIEPGHT------QSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFI 106
Query: 338 CNGTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHIS 502
C GH +C S P++ S C + E RE + GH
Sbjct: 107 CGREGHFEHQCHNSFSVCFPEDSSEDECQGPDSSSVRFQENTRE---------EEEGHFE 157
Query: 503 RNCPDGTKTCY 535
CPD + C+
Sbjct: 158 HQCPDSSSVCF 168
Score = 37.9 bits (84), Expect = 0.005
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = +2
Query: 161 SSSVCYKCN----RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR 328
SSSV ++ N GHF +C V +R+ E N + +E
Sbjct: 139 SSSVRFQENTREEEEGHFEHQCPDSSSVCFQE-ISRE-EGFISLNSSSKSTSKGRETRRL 196
Query: 329 CYRCNGTGHIARECAQS 379
CY C G GHIAR+C S
Sbjct: 197 CYECKGKGHIARDCPNS 213
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 113 YISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVV 232
+IS+ S+ + + + +CY+C GH AR+C V
Sbjct: 177 FISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQV 216
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 54.0 bits (124), Expect = 7e-08
Identities = 39/140 (27%), Positives = 54/140 (38%), Gaps = 12/140 (8%)
Frame = +2
Query: 188 RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARE 367
+TG F++ ++ RD + QR K + AR E+ + + N R
Sbjct: 200 KTGLFSKRMK---IIHRDPVLHAQRVAAIKKAKGTPAARKHASESMKAFFSNPVNREQRS 256
Query: 368 CAQSPDEPSCYNCNKTGHIARNCPE-GGRESATXTCYNCNKSGHISRNCP-------DGT 523
+ + C NC + GH CPE G C C GH R CP G
Sbjct: 257 LSMKGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGI 316
Query: 524 KT----CYVCGKPGHISREC 571
T C +CG+ GH SR C
Sbjct: 317 STRYHKCGICGERGHNSRTC 336
Score = 40.7 bits (91), Expect = 7e-04
Identities = 35/125 (28%), Positives = 46/125 (36%), Gaps = 11/125 (8%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD--------- 325
C C + GH C + G + D F +C C GH R C +
Sbjct: 266 CKNCGQEGHRRHYCPELGT-NADRKF-----RCRGCGGKGHNRRTCPKSKSIVTKGISTR 319
Query: 326 --RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHI 499
+C C GH +R C + P+ N + +G N E G T C C K GH
Sbjct: 320 YHKCGICGERGHNSRTCRK----PTGVNPSCSGE---NSGEDGVGKITYACGFCKKMGHN 372
Query: 500 SRNCP 514
R CP
Sbjct: 373 VRTCP 377
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 50.8 bits (116), Expect = 6e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 266 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 382
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 47.6 bits (108), Expect = 6e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 326 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 436
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +2
Query: 380 PDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNC 511
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 136
Score = 45.6 bits (103), Expect = 2e-05
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = +2
Query: 413 TGHIARNCPEGGRESATX-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 565
T +R P G R++ + C+NC GH +R+C G CY CG+ GHI R
Sbjct: 75 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134
Query: 566 EC 571
C
Sbjct: 135 NC 136
Score = 41.5 bits (93), Expect = 4e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 164 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 313
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 98 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 137
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 50.8 bits (116), Expect = 6e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 266 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 382
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 47.6 bits (108), Expect = 6e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 326 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 436
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +2
Query: 380 PDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNC 511
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 95
Score = 45.6 bits (103), Expect = 2e-05
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = +2
Query: 413 TGHIARNCPEGGRESATX-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 565
T +R P G R++ + C+NC GH +R+C G CY CG+ GHI R
Sbjct: 34 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93
Query: 566 EC 571
C
Sbjct: 94 NC 95
Score = 41.5 bits (93), Expect = 4e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 164 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 313
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 57 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 96
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 50.8 bits (116), Expect = 6e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 266 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 382
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 48.8 bits (111), Expect = 3e-06
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +2
Query: 320 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 436
A RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 57 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 48.0 bits (109), Expect = 4e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 380 PDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 526
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 55 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 100
Score = 44.8 bits (101), Expect = 4e-05
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 425 ARNCPEGGRESATXTCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISREC 571
+R+ G C+NC GH +R+C G CY CG+ GHI R C
Sbjct: 45 SRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 337
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 60 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 104
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQGGVVSRDSG 247
CY+C GH R C R SG
Sbjct: 82 CYRCGERGHIERNCKNSPKKLRRSG 106
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 50.8 bits (116), Expect = 6e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 266 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 382
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 70 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 110
Score = 48.8 bits (111), Expect = 3e-06
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +2
Query: 320 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 436
A RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 68 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 106
Score = 48.0 bits (109), Expect = 4e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 380 PDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 526
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 66 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 111
Score = 44.8 bits (101), Expect = 4e-05
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 425 ARNCPEGGRESATXTCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISREC 571
+R+ G C+NC GH +R+C G CY CG+ GHI R C
Sbjct: 56 SRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 106
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 337
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 71 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 115
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQGGVVSRDSG 247
CY+C GH R C R SG
Sbjct: 93 CYRCGERGHIERNCKNSPKKLRRSG 117
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 50.8 bits (116), Expect = 6e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 266 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 382
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 48.8 bits (111), Expect = 3e-06
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +2
Query: 320 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 436
A RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 98 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 48.0 bits (109), Expect = 4e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 380 PDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 526
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 96 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 141
Score = 44.8 bits (101), Expect = 4e-05
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 425 ARNCPEGGRESATXTCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISREC 571
+R+ G C+NC GH +R+C G CY CG+ GHI R C
Sbjct: 86 SRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 337
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 101 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 145
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQGGVVSRDSG 247
CY+C GH R C R SG
Sbjct: 123 CYRCGERGHIERNCKNSPKKLRRSG 147
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 50.4 bits (115), Expect = 8e-07
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Frame = +2
Query: 383 DEPSCYNCNKTGHIARNCPEGGR-ESATXTCYNCNKSGHISRNCPDGTKT-------CYV 538
D +CY C K GH AR+C + +A TCY C++ GH S CP+ CY
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYW 91
Query: 539 CGKPGH 556
CG H
Sbjct: 92 CGNQDH 97
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Frame = +2
Query: 329 CYRCNGTGHIAREC--AQSPDEP--SCYNCNKTGHIARNCPEGGRESATXT--CYNCNKS 490
CY+C GH AR C P +CY C++ GH + CP + CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCGNQ 95
Query: 491 GH 496
H
Sbjct: 96 DH 97
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Frame = +2
Query: 470 CYNCNKSGHISRNCPDGTK------TCYVCGKPGHISREC 571
CY C K GH +R+C T+ TCY C + GH S C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGC 75
Score = 37.1 bits (82), Expect = 0.008
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 352
CYKC + GHFAR C VV++ + C+ C+ GH + C + R + N G
Sbjct: 36 CYKCGKLGHFARSC---HVVTQPT---TAYITCYFCSEEGHRSNGCPNK--RTDQVNPKG 87
Query: 353 H 355
H
Sbjct: 88 H 88
Score = 29.1 bits (62), Expect = 2.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 524 KTCYVCGKPGHISREC 571
+ CY CGK GH +R C
Sbjct: 34 RACYKCGKLGHFARSC 49
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 48.4 bits (110), Expect = 3e-06
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Frame = +2
Query: 221 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRC------------YRCNGTGHIAR 364
GG R G R C+KC GH ARDC E Y G G+
Sbjct: 116 GGYGGRGGG-GRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGG 174
Query: 365 ECAQSPDEPSCYNCNKTGHIARNCPEGGR 451
SCY+C ++GH AR+C GGR
Sbjct: 175 GRGGGGGGGSCYSCGESGHFARDCTSGGR 203
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +2
Query: 167 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFA--RDCKEEADRCYRC 340
S CYKC GH AR+C++GG G + G+ R CY C
Sbjct: 129 SDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSC 188
Query: 341 NGTGHIAREC 370
+GH AR+C
Sbjct: 189 GESGHFARDC 198
Score = 41.5 bits (93), Expect = 4e-04
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Frame = +2
Query: 395 CYNCNKTGHIARNCPEGGRESATXTC-------YNCNKSGHIS--RNCPDGTKTCYVCGK 547
CY C + GH+AR+C EGG Y G+ R G +CY CG+
Sbjct: 131 CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGE 190
Query: 548 PGHISREC 571
GH +R+C
Sbjct: 191 SGHFARDC 198
Score = 37.5 bits (83), Expect = 0.006
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQGG 226
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
Score = 33.1 bits (72), Expect = 0.14
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 518 GTKTCYVCGKPGHISREC 571
G CY CG+PGH++R+C
Sbjct: 127 GGSDCYKCGEPGHMARDC 144
Score = 30.7 bits (66), Expect = 0.73
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 443 GGRESATXTCYNCNKSGHISRNCPDG 520
GG CY C + GH++R+C +G
Sbjct: 122 GGGGRGGSDCYKCGEPGHMARDCSEG 147
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 48.4 bits (110), Expect = 3e-06
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = +2
Query: 221 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--S 394
GG S G CFKC GH AR+C + G G S
Sbjct: 122 GGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLS 181
Query: 395 CYNCNKTGHIARNCPEGG 448
CY+C ++GH AR+C GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 47.6 bits (108), Expect = 6e-06
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +2
Query: 329 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRN 508
C++C GH+AREC+Q Y+ G + GG +CY+C +SGH +R+
Sbjct: 138 CFKCGEPGHMARECSQGGGG---YSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARD 194
Query: 509 CPDG 520
C G
Sbjct: 195 CTSG 198
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQ-GGVVSRDSGFNRQRE-----------KCFKCNRTGHFARDC 310
C+KC GH AREC+Q GG S G R C+ C +GHFARDC
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDC 195
Score = 44.4 bits (100), Expect = 6e-05
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +2
Query: 392 SCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 571
SC+ C + GH+AR C +GG + SG G +CY CG+ GH +R+C
Sbjct: 137 SCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGG-GGGGGGGGLSCYSCGESGHFARDC 195
Score = 37.5 bits (83), Expect = 0.006
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQGG 226
CY C +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 33.9 bits (74), Expect = 0.078
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 518 GTKTCYVCGKPGHISREC 571
G +C+ CG+PGH++REC
Sbjct: 134 GDNSCFKCGEPGHMAREC 151
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +2
Query: 416 GHIARNCPEGGRESATXTCYNCNKSGHISRNCPDG 520
G+ R G +C+ C + GH++R C G
Sbjct: 120 GYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQG 154
>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 260
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +2
Query: 467 TCYNCNKSGHISRNCPDGT---KTCYVCGKPGHISREC 571
TCY+C + HI+ +CP T K+C++C H +R+C
Sbjct: 144 TCYSCGEKDHITVSCPTLTNCRKSCFICASLEHGARQC 181
Score = 30.7 bits (66), Expect = 0.73
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 392 SCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNC 511
+CY+C + HI +CP + +C+ C H +R C
Sbjct: 144 TCYSCGEKDHITVSCPT--LTNCRKSCFICASLEHGARQC 181
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/79 (21%), Positives = 25/79 (31%)
Frame = +2
Query: 335 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCP 514
+ I C + DE N + R E G ++ +
Sbjct: 85 KLEAANEIVTHCVERQDED-----NMVEDVVRGEEEDGETTSNSVMTKLLRGARYFDPLD 139
Query: 515 DGTKTCYVCGKPGHISREC 571
G TCY CG+ HI+ C
Sbjct: 140 AGWVTCYSCGEKDHITVSC 158
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +2
Query: 221 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 325
GG SR G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.5 bits (68), Expect = 0.42
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQGG 226
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.55
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 386 EPSCYNCNKTGHIARNCPEGG 448
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 0.73
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 290 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 388
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +2
Query: 221 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 325
GG SR G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.5 bits (68), Expect = 0.42
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQGG 226
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.55
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 386 EPSCYNCNKTGHIARNCPEGG 448
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 0.73
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 290 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 388
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 9/40 (22%)
Frame = +2
Query: 236 RDSGFNRQREK---------CFKCNRTGHFARDCKEEADR 328
RD G++R R + CFKC + GHFAR+C E+ R
Sbjct: 100 RDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESSR 139
Score = 34.3 bits (75), Expect = 0.059
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQGGVVSRDSG 247
C+KC + GHFAREC SRD G
Sbjct: 120 CFKCGKPGHFARECPSES--SRDGG 142
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 428 RNCPEGGRESATXTCYNCNKSGHISRNCP 514
R+ P GGR C+ C K GH +R CP
Sbjct: 108 RSRPSGGRGGGD--CFKCGKPGHFARECP 134
Score = 33.1 bits (72), Expect = 0.14
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 518 GTKTCYVCGKPGHISREC 571
G C+ CGKPGH +REC
Sbjct: 116 GGGDCFKCGKPGHFAREC 133
Score = 30.3 bits (65), Expect = 0.96
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +2
Query: 395 CYNCNKTGHIARNCP-EGGRE 454
C+ C K GH AR CP E R+
Sbjct: 120 CFKCGKPGHFARECPSESSRD 140
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 218 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 370
QGG RD+ +R R++ + +R+ C++C GH AREC
Sbjct: 87 QGGA-GRDNDGDRGRDRGYDRDRSRPSGG---RGGGDCFKCGKPGHFAREC 133
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 158 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 262
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 32.7 bits (71), Expect = 0.18
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 218 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 313
+GG R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 31.5 bits (68), Expect = 0.42
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 230 VSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 370
+ R +G+ + K R G R E +CY C GH AREC
Sbjct: 58 LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 1.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 383 DEPSCYNCNKTGHIARNCPEG 445
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 530 CYVCGKPGHISREC 571
CY CG+ GH +REC
Sbjct: 91 CYECGELGHFAREC 104
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 158 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 262
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 32.7 bits (71), Expect = 0.18
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 218 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 313
+GG R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 31.5 bits (68), Expect = 0.42
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 230 VSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 370
+ R +G+ + K R G R E +CY C GH AREC
Sbjct: 58 LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 1.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 383 DEPSCYNCNKTGHIARNCPEG 445
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 530 CYVCGKPGHISREC 571
CY CG+ GH +REC
Sbjct: 91 CYECGELGHFAREC 104
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 37.9 bits (84), Expect = 0.005
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQGGVVSRDSGFNRQR 262
CY+C TGHFAREC G R +R R
Sbjct: 101 CYECGETGHFARECRNRGGTGRRRSKSRSR 130
Score = 33.9 bits (74), Expect = 0.078
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +2
Query: 266 KCFKCNRTGHFARDCK 313
KC++C TGHFAR+C+
Sbjct: 100 KCYECGETGHFARECR 115
Score = 31.9 bits (69), Expect = 0.32
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 443 GGRESATXTCYNCNKSGHISRNC 511
GGR + CY C ++GH +R C
Sbjct: 92 GGRGGSDLKCYECGETGHFAREC 114
Score = 31.1 bits (67), Expect = 0.55
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 326 RCYRCNGTGHIAREC 370
+CY C TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114
Score = 30.3 bits (65), Expect = 0.96
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 395 CYNCNKTGHIARNCPEGG 448
CY C +TGH AR C G
Sbjct: 101 CYECGETGHFARECRNRG 118
Score = 29.5 bits (63), Expect = 1.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 530 CYVCGKPGHISREC 571
CY CG+ GH +REC
Sbjct: 101 CYECGETGHFAREC 114
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 37.1 bits (82), Expect = 0.008
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 257 QREKCFKCNRTGHFARDC 310
Q+EKCF C +TGHFA DC
Sbjct: 261 QQEKCFVCGQTGHFASDC 278
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 356 IARECAQSP-DEPSCYNCNKTGHIARNCP 439
I RE P + C+ C +TGH A +CP
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP 279
Score = 27.9 bits (59), Expect = 5.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 512 PDGTKTCYVCGKPGHISREC 571
P + C+VCG+ GH + +C
Sbjct: 259 PGQQEKCFVCGQTGHFASDC 278
Score = 27.9 bits (59), Expect = 5.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 173 CYKCNRTGHFAREC 214
C+ C +TGHFA +C
Sbjct: 265 CFVCGQTGHFASDC 278
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 35.9 bits (79), Expect = 0.019
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Frame = +2
Query: 248 FNRQREKCFKCNRTGHFARDCKEEADR--CYRCNGTGHIARECAQSPDEPSCYNCNKTGH 421
F R+ E +G A + +EE C+ C GH R+C + D +
Sbjct: 575 FARRLEAMKSIMPSGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTD-------TELRD 627
Query: 422 IARNCP-EGGRESATXTCYNCNKSGHISRNCPD 517
+ +N GRE A+ C C + H + CP+
Sbjct: 628 LVQNISVRNGREEASSLCIRCFQLSHWAATCPN 660
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 413 TGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTKT 529
+G +A N E R+ C+ C K GH R+C + T T
Sbjct: 588 SGSLAENAEEEQRD---LICFYCGKKGHCLRDCLEVTDT 623
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 488 SGHISRNCPDGTKT--CYVCGKPGHISREC 571
SG ++ N + + C+ CGK GH R+C
Sbjct: 588 SGSLAENAEEEQRDLICFYCGKKGHCLRDC 617
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Frame = +2
Query: 170 VCYKCNRTGHFARECTQ------GGVVSRDSGFNRQREK---CFKCNRTGHFARDC 310
+C+ C + GH R+C + +V S N + E C +C + H+A C
Sbjct: 603 ICFYCGKKGHCLRDCLEVTDTELRDLVQNISVRNGREEASSLCIRCFQLSHWAATC 658
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 35.5 bits (78), Expect = 0.026
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 173 CYKCNRTGHFAREC-TQGGVVSRDSGFNRQR 262
CY+C +GHFAREC ++GG R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 32.7 bits (71), Expect = 0.18
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 221 GGVVSRDSGFNRQRE--KCFKCNRTGHFARDCK 313
GG D G R KC++C +GHFAR+C+
Sbjct: 80 GGRGGGDGGRGRGGSDLKCYECGESGHFARECR 112
Score = 30.7 bits (66), Expect = 0.73
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 446 GRESATXTCYNCNKSGHISRNC 511
GR + CY C +SGH +R C
Sbjct: 90 GRGGSDLKCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 1.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 326 RCYRCNGTGHIAREC 370
+CY C +GH AREC
Sbjct: 97 KCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 1.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 530 CYVCGKPGHISREC 571
CY CG+ GH +REC
Sbjct: 98 CYECGESGHFAREC 111
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 395 CYNCNKTGHIARNCPEGG 448
CY C ++GH AR C G
Sbjct: 98 CYECGESGHFARECRSRG 115
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 35.1 bits (77), Expect = 0.034
Identities = 33/148 (22%), Positives = 51/148 (34%), Gaps = 11/148 (7%)
Frame = +2
Query: 161 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNR-QREKCFKCNRTGHFARDCKEEADRCYR 337
+S Y N T E GG + G + +R C++C GH + C +
Sbjct: 444 NSGDSYYMNETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTACPIKLQNTSH 503
Query: 338 CNGT-GHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATXT------CYNCNKSGH 496
N T H E P + + Y+ K N + + T N
Sbjct: 504 TNSTLDHQTVEA--GPTQVTSYSLQKKTRDTENNGGSFMDESYATVPISIDVTNGANDAS 561
Query: 497 ISRNCPDG---TKTCYVCGKPGHISREC 571
++ G + CY CG+ GH+S C
Sbjct: 562 LTSAVSTGKIKKRNCYECGEKGHLSSAC 589
Score = 33.1 bits (72), Expect = 0.14
Identities = 22/105 (20%), Positives = 36/105 (34%)
Frame = +2
Query: 257 QREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 436
+R C++C GH + C + + + +E Y K +
Sbjct: 393 KRRVCYECGEKGHLSTACPIKLQKADD-QANSKLGQETVDGRPAMQSYGLPKNSGDSYYM 451
Query: 437 PEGGRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 571
E ++T YN S + CY CG+ GH+S C
Sbjct: 452 NE--TYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTAC 494
Score = 28.3 bits (60), Expect = 3.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 470 CYNCNKSGHISRNCPD 517
CY C + GH+S CP+
Sbjct: 576 CYECGEKGHLSSACPN 591
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 34.7 bits (76), Expect = 0.045
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 263 EKCFKCNRTGHFARDC 310
++CFKC R GH+ARDC
Sbjct: 126 DECFKCGRVGHWARDC 141
Score = 32.7 bits (71), Expect = 0.18
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQGG 226
C+KC R GH+AR+C G
Sbjct: 128 CFKCGRVGHWARDCPSAG 145
Score = 32.3 bits (70), Expect = 0.24
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 386 EPSCYNCNKTGHIARNCPEGG 448
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
Score = 28.3 bits (60), Expect = 3.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +2
Query: 443 GGRESATXTCYNCNKSGHISRNCP 514
GG C+ C + GH +R+CP
Sbjct: 119 GGGRVGEDECFKCGRVGHWARDCP 142
Score = 27.5 bits (58), Expect = 6.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 323 DRCYRCNGTGHIAREC 370
D C++C GH AR+C
Sbjct: 126 DECFKCGRVGHWARDC 141
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +2
Query: 443 GGRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 571
GGR+S + G G C+ CG+ GH +R+C
Sbjct: 99 GGRDSGYSIAGKGSFGGGGGGGGRVGEDECFKCGRVGHWARDC 141
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 33.5 bits (73), Expect = 0.10
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Frame = +2
Query: 395 CYNCNKTGHIARNC-------PEGGRESATXTCYNCNKSGHISRNCPDG 520
C+NC H+ARNC P+ S + + N G NC DG
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDG 136
Score = 30.3 bits (65), Expect = 0.96
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Frame = +2
Query: 329 CYRCNGTGHIAREC----AQSPD------EPSCYNCNKTGHIARNCPEGGRESAT 463
C+ C H+AR C PD P + N G NC +GG S T
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDGGTSSGT 142
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 33.1 bits (72), Expect = 0.14
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 401 NCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 526
+ +++G + GG AT +C C SGH+S CP TK
Sbjct: 392 HAHQSGQSGNHYSGGG---ATTSCNVCGNSGHVSAKCPGATK 430
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 476 NCNKSGHISRNCPDG--TKTCYVCGKPGHISREC 571
+ ++SG + G T +C VCG GH+S +C
Sbjct: 392 HAHQSGQSGNHYSGGGATTSCNVCGNSGHVSAKC 425
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 33.1 bits (72), Expect = 0.14
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 269 CFKCNRTGHFARDCKEEA 322
CFKC R GH++RDC A
Sbjct: 8 CFKCGRPGHWSRDCPSSA 25
Score = 31.5 bits (68), Expect = 0.42
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 452 ESATXTCYNCNKSGHISRNCP 514
ESA C+ C + GH SR+CP
Sbjct: 2 ESAPTGCFKCGRPGHWSRDCP 22
Score = 30.3 bits (65), Expect = 0.96
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 530 CYVCGKPGHISREC 571
C+ CG+PGH SR+C
Sbjct: 8 CFKCGRPGHWSRDC 21
Score = 29.9 bits (64), Expect = 1.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQGGVVS 235
C+KC R GH++R+C V+
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVA 28
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/38 (23%), Positives = 17/38 (44%)
Frame = +2
Query: 395 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRN 508
C+ C + GH +R+CP + + + + I N
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNN 45
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 32.7 bits (71), Expect = 0.18
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 326 RCYRCNGTGHIARECAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 448
RC CNGTG + C++ S + C C+ +G A NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 32.7 bits (71), Expect = 0.18
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 449 RESATXTCYNCNKSGHISRNCPD 517
RES +C+ C KSGH + +CPD
Sbjct: 721 RESFGGSCFICGKSGHRATDCPD 743
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 392 SCYNCNKTGHIARNCPE 442
SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743
Score = 27.1 bits (57), Expect = 9.0
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 527 TCYVCGKPGHISREC 571
+C++CGK GH + +C
Sbjct: 727 SCFICGKSGHRATDC 741
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 31.9 bits (69), Expect = 0.32
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 257 QREKCFKCNRTGHFARDCK 313
Q+E+CF C + GHFA +C+
Sbjct: 260 QQERCFLCGQMGHFASNCE 278
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 356 IARECAQSPDEPS-CYNCNKTGHIARNC 436
I RE +P + C+ C + GH A NC
Sbjct: 250 ILREVVYTPGQQERCFLCGQMGHFASNC 277
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 31.5 bits (68), Expect = 0.42
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 500 SRNCPDGTKTCYVCGKPGHISREC 571
S D K CY C K GH++R+C
Sbjct: 916 SEETDDAVKICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.73
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 437 PEGGRESATXTCYNCNKSGHISRNC 511
P + A CY C K GH++R+C
Sbjct: 915 PSEETDDAVKICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.73
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 170 VCYKCNRTGHFAREC 214
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.73
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +2
Query: 269 CFKCNRTGHFARDC--KEEAD 325
C++C + GH ARDC KE +D
Sbjct: 926 CYRCKKVGHLARDCHGKETSD 946
Score = 30.3 bits (65), Expect = 0.96
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 395 CYNCNKTGHIARNC 436
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 29.9 bits (64), Expect = 1.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 329 CYRCNGTGHIAREC 370
CYRC GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 31.1 bits (67), Expect = 0.55
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 383 DEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKS 490
D P C+NC H R CP SA + KS
Sbjct: 239 DPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKS 274
Score = 30.3 bits (65), Expect = 0.96
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +2
Query: 314 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 448
++ RC+ C G H REC + D + + K RN G
Sbjct: 238 DDPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSG 282
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 31.1 bits (67), Expect = 0.55
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Frame = +2
Query: 335 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC----PEGGRESATXTCYNCNKSGHIS 502
R + R+ A +P + C C T H+ +C P CY C GH+S
Sbjct: 268 RATARKSVGRKLA-TPAKRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVS 326
Query: 503 RNCP 514
CP
Sbjct: 327 MYCP 330
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Frame = +2
Query: 260 REKCFKCNRTGHFARDC---------KEEADRCYRCNGTGHIAREC 370
+ C C T H DC + +CY C G GH++ C
Sbjct: 284 KRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYC 329
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 31.1 bits (67), Expect = 0.55
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Frame = +2
Query: 314 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG---GRESATXTCYNCN 484
E ++C C G G + + EP Y N+ + G ++ + C NCN
Sbjct: 196 ETVEKCTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCYGRGLVAHKDGSDTICTNCN 255
Query: 485 KSGHISRNCPD----GTKTCYVCGKPGHI 559
G + CP G C C G +
Sbjct: 256 GKGKLP--CPTCQSRGLIKCQTCDSTGSL 282
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 31.1 bits (67), Expect = 0.55
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 386 EPSCYNCNKTGHIARNCPEGGRESAT 463
E +CY C + GHIA+ CP RE+ T
Sbjct: 224 ELTCYRCKQEGHIAKICPT--RETTT 247
Score = 30.7 bits (66), Expect = 0.73
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 467 TCYNCNKSGHISRNCPDGTKTCYV 538
TCY C + GHI++ CP T V
Sbjct: 226 TCYRCKQEGHIAKICPTRETTTKV 249
Score = 27.1 bits (57), Expect = 9.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 329 CYRCNGTGHIAREC 370
CYRC GHIA+ C
Sbjct: 227 CYRCKQEGHIAKIC 240
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 30.7 bits (66), Expect = 0.73
Identities = 39/152 (25%), Positives = 56/152 (36%), Gaps = 16/152 (10%)
Frame = +2
Query: 164 SSVCYKCNRTGHFARECTQGGVVSRDS---GFN-RQREKCFKCNRTGH--FARDCKEEAD 325
S+VC C + GH + C SR+S N R E CN G R EA+
Sbjct: 764 SNVCIHCQQRGHASTNCPSRVPASRNSRPTATNPRNDESTVSCNTCGSQCVLRTANTEAN 823
Query: 326 R---CYRC--NGTGHIARECA---QSPDEPSCYNCNKTGHI-ARNCPEGGRESATXTCYN 478
R + C G A E + S + + N +G +R GGR +
Sbjct: 824 RGRQFFSCPTQGCSFFAWEDSINNSSGNATTGSNSGGSGRRGSRGRGRGGRGGQSSGGRR 883
Query: 479 CNKSGHISRNC-PDGTKTCYVCGKPGHISREC 571
+ + +S P C+ CG P H + C
Sbjct: 884 GSGTSFVSATGEPVSGIRCFSCGDPSHFANAC 915
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +2
Query: 416 GHIARNCPEGGRESATXTCYNCNKSGHISRNCP 514
G N +G + C +C + GH S NCP
Sbjct: 749 GTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCP 781
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 30.3 bits (65), Expect = 0.96
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Frame = +2
Query: 470 CYNCNKSGHISRNCPDGTKT------CYVCGKPGHISREC 571
C C + GH CP T T C +CG GH + +C
Sbjct: 363 CRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +2
Query: 383 DEPSCYNCNKTGHIARNCPEGGRE-SATXTCYNCNKSGHISRNCP 514
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 30.3 bits (65), Expect = 0.96
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Frame = +2
Query: 470 CYNCNKSGHISRNCPDGTKT------CYVCGKPGHISREC 571
C C + GH CP T T C +CG GH + +C
Sbjct: 363 CRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +2
Query: 383 DEPSCYNCNKTGHIARNCPEGGRE-SATXTCYNCNKSGHISRNCP 514
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 30.3 bits (65), Expect = 0.96
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 335 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 448
R NG G E P C+ CN GH ++CP G
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNG 227
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 170 VCYKCNRTGHFARECTQGG 226
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 30.3 bits (65), Expect = 0.96
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 143 SKPIAMSSSVCYKCNRTGHFAREC 214
+KP + SVCY+C H+A+ C
Sbjct: 268 NKPRGKAKSVCYRCGMDDHWAKTC 291
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 0.96
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 170 VCYKCNRTGHFARECTQGG 226
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 30.3 bits (65), Expect = 0.96
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +2
Query: 302 RDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATXTCYN 478
RDC+ A RCY G AR C + PS N + I E G SA ++
Sbjct: 126 RDCRNMASIRCYPSRGEEEEARYCGKQLLSPSSDNYQDSSDI-----ESGSVSARHELFS 180
Query: 479 CNKS 490
C S
Sbjct: 181 CKSS 184
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 30.3 bits (65), Expect = 0.96
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +2
Query: 314 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 451
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +2
Query: 383 DEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 526
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +2
Query: 266 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE--PSCY 400
+CF C H R+C DR N R+ Q+P PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 30.3 bits (65), Expect = 0.96
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +2
Query: 314 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 451
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +2
Query: 383 DEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 526
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +2
Query: 266 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE--PSCY 400
+CF C H R+C DR N R+ Q+P PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243
>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 447
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 323 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEG-GRESATXTCYNCNKSGH 496
+ C CNG+G A++ +P+ C C G + + G TC CN +G
Sbjct: 228 ESCGTCNGSG------AKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGE 281
Query: 497 ISRNC 511
IS+ C
Sbjct: 282 ISKPC 286
>At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 373
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/72 (29%), Positives = 24/72 (33%), Gaps = 11/72 (15%)
Frame = +2
Query: 362 RECAQSPDEPSCYNCNKTGHIARNCPE---GGRESATXTCYNCNKSGHISR--------N 508
R C + C NC H +C E GRE T C H +
Sbjct: 267 RRCCYKCRKHFCINCKVPWHSNLSCKEHKSSGREPITTVWRQCRSCLHKIKLSEERMPVT 326
Query: 509 CPDGTKTCYVCG 544
C G K CY CG
Sbjct: 327 CRCGYKFCYACG 338
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 1.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 311 KEEADRCYRCNGTGHIARECAQSP 382
K + + C++C T HIA++C P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 269 CFKCNRTGHFARDC 310
CFKC T H A+DC
Sbjct: 342 CFKCGSTDHIAKDC 355
Score = 27.5 bits (58), Expect = 6.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 173 CYKCNRTGHFARECTQG 223
C+KC T H A++C G
Sbjct: 342 CFKCGSTDHIAKDCVGG 358
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 461 TXTCYNCNKSGHISRNCPD 517
T C +CN +GH SR CP+
Sbjct: 2 TRRCSHCNHNGHNSRTCPN 20
Score = 27.9 bits (59), Expect = 5.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 395 CYNCNKTGHIARNCPEGG 448
C +CN GH +R CP G
Sbjct: 5 CSHCNHNGHNSRTCPNRG 22
>At3g16350.1 68416.m02068 myb family transcription factor ; contains
Pfam profile: PF00249 Myb-like DNA-binding domain
Length = 387
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 461 TXTCYNCNKSGHISRNCPD-GTKTCYVCGKPG 553
T C +C+ +GH SR CP G TC G G
Sbjct: 2 TRRCSHCSNNGHNSRTCPTRGGGTCGGSGGGG 33
>At2g16690.1 68415.m01915 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 240
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 221 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 310
G VVS + R R++CF C R H DC
Sbjct: 188 GEVVSVTFDYERIRKRCFFCQRLTHDKADC 217
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Frame = +2
Query: 188 RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARD---------CKEEADRCYRC 340
R+ + C + G ++ + ++E C K + A + C EE +R C
Sbjct: 778 RSNKDKQSCDKKGAKNKTRAEDDKQENCHKLSENNKTASEMLVSGTKVSCHEENNRVMNC 837
Query: 341 NGTGHIARECA 373
NG G +A E A
Sbjct: 838 NGRGSVAGEMA 848
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 356 IARECAQSPDEP-SCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRN 508
++R+ ++S E +C+ C + GH +CP E Y ++ RN
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQEASVPRRN 198
>At2g41570.1 68415.m05137 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 418
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 221 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 310
G +VS + R R++CF C R H DC
Sbjct: 188 GEIVSVTFDYERIRKRCFLCQRLTHEKGDC 217
>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
thaliana}
Length = 702
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 382 GRAVMLQLQQDGPHRTELSRGGAGVCDAXLL*LQQVRPHLPQLSRRHQ 525
G +V+ LQ DGPH ++R G A +L Q P L + +H+
Sbjct: 578 GPSVVRVLQSDGPHGFAVTRAVMGQSSADVLRAMQHEPELMFQTLKHR 625
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +2
Query: 311 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKS 490
+E C+ CNGTG AQ C C +G++ GG E C NC+ +
Sbjct: 81 RENTQPCFPCNGTG------AQ-----KCRLCVGSGNVTVEL--GGGEKEVSNCINCDGA 127
Query: 491 GHIS 502
G ++
Sbjct: 128 GSLT 131
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.1 bits (62), Expect = 2.2
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 470 CYNCNKSGHISRNCPDGTKT 529
C++C++ GH ++NCP T T
Sbjct: 6 CFHCHQPGHWAKNCPLKTTT 25
Score = 29.1 bits (62), Expect = 2.2
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 395 CYNCNKTGHIARNCP 439
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 158 MSSSVCYKCNRTGHFAREC 214
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 1012
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 248 FNRQREKCFKCNRTGHFARDCKEEADR 328
F + KCF C + GH A DC+ + R
Sbjct: 259 FPGEEGKCFLCGQEGHRAADCEGKIKR 285
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Frame = +2
Query: 329 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNC 436
C C+ T H EC P D CY C GH++ C
Sbjct: 298 CEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Frame = +2
Query: 260 REKCFKCNRTGHFARDC---------KEEADRCYRCNGTGHIAREC 370
+ C C+ T H +C ++ +CY C G GH++ C
Sbjct: 295 KRPCEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340
>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 735
Score = 28.7 bits (61), Expect = 2.9
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
Frame = +2
Query: 389 PSCYNCNKTGHIARNCPEGGRESAT-----------XTCYNCNKSGHISRNC 511
P C++C GHI C RE CY+ GHI RNC
Sbjct: 626 PVCHHCGVVGHIRPRCFRLLREKNRLMNAYDVRFHGPKCYHYGVQGHIKRNC 677
Score = 27.9 bits (59), Expect = 5.1
Identities = 23/76 (30%), Positives = 29/76 (38%)
Frame = +2
Query: 143 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 322
S+P + VC+ C GH C F REK NR + A D +
Sbjct: 618 SEPRRVFRPVCHHCGVVGHIRPRC-----------FRLLREK----NRLMN-AYDVRFHG 661
Query: 323 DRCYRCNGTGHIAREC 370
+CY GHI R C
Sbjct: 662 PKCYHYGVQGHIKRNC 677
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = +2
Query: 443 GGRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 571
G + + + N S I + CY CG GH+S EC
Sbjct: 125 GRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGDEGHLSYEC 167
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 131 AQEF-SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRD 241
A EF K + S CY+C GH + EC + + R+
Sbjct: 139 ASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRE 176
Score = 28.3 bits (60), Expect = 3.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 314 EEADRCYRCNGTGHIARECAQS 379
++ RCY C GH++ EC ++
Sbjct: 149 KDKSRCYECGDEGHLSYECPKN 170
Score = 28.3 bits (60), Expect = 3.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 383 DEPSCYNCNKTGHIARNCPE 442
D+ CY C GH++ CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169
Score = 27.5 bits (58), Expect = 6.8
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 470 CYNCNKSGHISRNCP 514
CY C GH+S CP
Sbjct: 154 CYECGDEGHLSYECP 168
>At3g07650.2 68416.m00917 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = +2
Query: 395 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 556
C +C+++ H A + R S T C CN R + C C GH
Sbjct: 25 CLSCDRSVHSANALSK--RHSRTLVCERCNAQPATVRCVEERVSLCQNCDWSGH 76
>At3g07650.1 68416.m00916 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = +2
Query: 395 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 556
C +C+++ H A + R S T C CN R + C C GH
Sbjct: 25 CLSCDRSVHSANALSK--RHSRTLVCERCNAQPATVRCVEERVSLCQNCDWSGH 76
>At2g38560.1 68415.m04737 transcription factor S-II (TFIIS)
domain-containing protein similar to SP|P49373
Transcription elongation factor S-II (TFIIS)
{Schizosaccharomyces pombe}; contains Pfam profile
PF01096: Transcription factor S-II (TFIIS)
Length = 378
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 506 CGRCGRTCCSYSRXASQTPAPPRDSSVRC 420
CGRCG+ C+Y + +++ P + V C
Sbjct: 340 CGRCGQRKCTYYQMQTRSADEPMTTYVTC 368
>At5g61670.2 68418.m07738 expressed protein
Length = 307
Score = 27.9 bits (59), Expect = 5.1
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Frame = +2
Query: 311 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATX 466
++E RC C GTG++A C C+ TG + P GG S T
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 467 TCYNCNKSGHISRNCP 514
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At5g61670.1 68418.m07737 expressed protein
Length = 307
Score = 27.9 bits (59), Expect = 5.1
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Frame = +2
Query: 311 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATX 466
++E RC C GTG++A C C+ TG + P GG S T
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 467 TCYNCNKSGHISRNCP 514
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At5g48250.1 68418.m05961 zinc finger (B-box type) family protein
contains similarity to CONSTANS homologs
Length = 373
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/54 (27%), Positives = 20/54 (37%)
Frame = +2
Query: 395 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 556
C +C++ H A + R S T C CN R + C C GH
Sbjct: 25 CLSCDRNVHSANALSK--RHSRTLVCERCNAQPASVRCSDERVSLCQNCDWSGH 76
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 27.9 bits (59), Expect = 5.1
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 406 QQDGP-HRTELSRGGAGVCDAXLL*LQQVRPHLPQLSRRHQDVLRVRQARPHLARV 570
QQ+ P + +L R A VCD L L +R HL + + H DVLR +A A++
Sbjct: 633 QQNNPDQQVDLVRD-ASVCDEKTLQLL-LRGHLKKCDQLHLDVLRALKASSDPAKL 686
>At5g21140.1 68418.m02524 expressed protein
Length = 312
Score = 27.9 bits (59), Expect = 5.1
Identities = 22/68 (32%), Positives = 28/68 (41%)
Frame = +2
Query: 362 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTKTCYVC 541
R ++ D PSC CN+ G A CP G C K R+ K C C
Sbjct: 187 RSWFRNNDVPSCEVCNEAGVKADLCPTEG--CPVRIHKYCLKKLLSQRD----DKRCSGC 240
Query: 542 GKPGHISR 565
GKP +S+
Sbjct: 241 GKPWPLSK 248
>At5g08730.1 68418.m01037 IBR domain-containing protein contains
similarity to Swiss-Prot:Q94981 ariadne-1 protein
(Ari-1) [Drosophila melanogaster]
Length = 500
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +2
Query: 434 CPEGGRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 571
CP G E A + N+ IS C G C+ CG H C
Sbjct: 169 CPASGCEYAVELQEDGNEDNVISVVCLCGHTFCWTCGLESHRPVSC 214
>At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 315
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +2
Query: 311 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKS 490
++E RC C GTG++ CA+ C + + R + + + T C NC+ +
Sbjct: 232 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 288
Query: 491 GHISRNCP 514
G + CP
Sbjct: 289 GKVM--CP 294
>At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 231
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +2
Query: 311 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKS 490
++E RC C GTG++ CA+ C + + R + + + T C NC+ +
Sbjct: 148 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 204
Query: 491 GHISRNCP 514
G + CP
Sbjct: 205 GKVM--CP 210
>At4g06526.1 68417.m00938 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Frame = +2
Query: 329 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 439
C C+ T H +EC P D C C GH++ CP
Sbjct: 282 CEICSHTDHPTKECLYPPHTMPYMDDCAKCSCCGGVGHMSMYCP 325
>At1g28210.2 68414.m03463 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 427
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +2
Query: 329 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATXT 469
C C GTGHI +E S KT + P G AT T
Sbjct: 221 CQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELV--IPGGVESEATIT 265
>At1g28210.1 68414.m03462 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 408
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +2
Query: 329 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATXT 469
C C GTGHI +E S KT + P G AT T
Sbjct: 221 CQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELV--IPGGVESEATIT 265
>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 516
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Frame = +2
Query: 338 CNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 439
C H +C P D CY+C GH++ CP
Sbjct: 339 CGYIDHPTEQCLHPPQAMPYMVDCAKCYSCGGVGHVSMYCP 379
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 263 EKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 370
E+C + + DC +CY C G GH++ C
Sbjct: 347 EQCLHPPQAMPYMVDCA----KCYSCGGVGHVSMYC 378
>At5g07270.1 68418.m00829 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 513
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = -2
Query: 521 CRRDSCGRCGRTCCSYSRXASQTPAPPRDSSVRCGPSC 408
C C RC CS S S T PP S+ C P C
Sbjct: 327 CEHQLCVRCALYLCSSSNVPSVTVGPP--GSIPC-PLC 361
>At4g30200.3 68417.m04295 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 702
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +2
Query: 401 NCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRN 508
NCN H A E G E SGHI +N
Sbjct: 594 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 629
>At4g30200.2 68417.m04294 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 714
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +2
Query: 401 NCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRN 508
NCN H A E G E SGHI +N
Sbjct: 606 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 641
>At4g30200.1 68417.m04293 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 685
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +2
Query: 401 NCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRN 508
NCN H A E G E SGHI +N
Sbjct: 577 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 612
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
to disease resistance protein RPP1-WsB (GI:3860165)
[Arabidopsis thaliana]
Length = 1996
Score = 27.5 bits (58), Expect = 6.8
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Frame = +2
Query: 245 GFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP-----SCYNCN 409
GF R+R C+ C C+ C+ + A +P +P +CY
Sbjct: 1549 GFTRKRHNCYNCGLV------------HCHACSSKKALKAALAPTPGKPHRVCDACYTKL 1596
Query: 410 KTGHIARNCPEGGRESATXT 469
K G N R S T T
Sbjct: 1597 KAGESGYNSNVANRNSTTPT 1616
>At2g22360.1 68415.m02653 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 442
Score = 27.5 bits (58), Expect = 6.8
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +2
Query: 323 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHI--ARNCPEGGRESATXTCYNCNKSG 493
+ C C G+G A+ +P+ C C G + A P G + TC +CN +G
Sbjct: 222 ESCGTCEGSG------AKPGTKPTKCTTCGGQGQVVSAARTPLGVFQQVM-TCSSCNGTG 274
Query: 494 HISRNC 511
IS C
Sbjct: 275 EISTPC 280
>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 275
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 155 AMSSSVCYKCNRTGHFARECTQGGV-VSRDS 244
A ++S C KC + GH+ EC V +SR S
Sbjct: 94 ASAASQCQKCFQAGHWTYECKNERVYISRPS 124
>At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 457
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +2
Query: 350 GHIARECAQSP-DEPSCYNCNKTGHIARNC 436
G+ AR P P C NC + GH+ C
Sbjct: 299 GNTARVAVTYPRPPPKCLNCGRYGHLLSRC 328
>At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 415
Score = 27.1 bits (57), Expect = 9.0
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 257 QREKCFKCNRTGHFARDC 310
Q CF+C + GH+ DC
Sbjct: 7 QTGDCFRCRQAGHWINDC 24
>At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 382 GRAVMLQLQQDGPHRTELSRGGAGVCDAXLL*LQQVRPHLPQLSRRHQ 525
G +V+ Q DGPH ++R G A +L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 382 GRAVMLQLQQDGPHRTELSRGGAGVCDAXLL*LQQVRPHLPQLSRRHQ 525
G +V+ Q DGPH ++R G A +L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At4g10630.1 68417.m01737 glutaredoxin family protein contains Pfam
profile PF00462: Glutaredoxin
Length = 334
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 329 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 439
C+RCNG+ + + + C CN+ G + CP
Sbjct: 297 CFRCNGSCKMVKGWGSASVVVRCNECNENGLVP--CP 331
>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
{Mus musculus}
Length = 865
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -2
Query: 464 ASQTPAPPRDSSVRCGPSCCSCNMTARPGSVRTRALCA 351
AS+TP P + G C C SVR + +CA
Sbjct: 701 ASKTPNAPAKTKTGAGMPCSLCPHPTCQHSVRNQGVCA 738
>At1g40080.1 68414.m04737 hypothetical protein member of
hypothetical protein common family
Length = 154
Score = 27.1 bits (57), Expect = 9.0
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 2/85 (2%)
Frame = +2
Query: 263 EKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSP--DEPSCYNCNKTGHIARNC 436
+KC N +A+ ++ Y TG+ C + D+P + N +
Sbjct: 71 QKCLGANNP--YAKFVEKNKGLAYEST-TGYYQMRCRWNVTHDKPVFIDMNNEKRCIMHP 127
Query: 437 PEGGRESATXTCYNCNKSGHISRNC 511
P TC+ C K GH + C
Sbjct: 128 PFQPGRMVRRTCHRCKKVGHRCKKC 152
>At1g30660.1 68414.m03749 toprim domain-containing protein contains
Pfam profile PF01751: Toprim domain
Length = 321
Score = 27.1 bits (57), Expect = 9.0
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 482 NKSGHISRNCPDGTKTCYVCGK 547
++ G ++NCP G ++C +C K
Sbjct: 43 SEQGIDAQNCPPGVRSCLICPK 64
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,916,789
Number of Sequences: 28952
Number of extensions: 241840
Number of successful extensions: 1453
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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