Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10g20
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    29   0.46 
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   7.5  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   7.5  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    25   10.0 
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    25   10.0 

>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = -2

Query: 389 IPLIMVPMIFPLGSTALK-----DNPFSSESLQYSSTSRHEPESYNPTASFK 249
           +PL+M   + P  S ALK      NP ++ SL+ SS    E E + PT+  +
Sbjct: 174 MPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSPLGSEDECHPPTSDMQ 225


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 262 VGLYDSGSCLEVEEYCRDSLLKGLSFK 342
           VG YD G     EE C +S +KG+S K
Sbjct: 91  VGFYDQGYT-PGEESCTNSTIKGMSGK 116


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 396 WTYSIDHGTNDFSLRLDG 343
           W ++ DHG +DF    DG
Sbjct: 263 WVFTADHGMSDFGSHGDG 280


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 365 IFPLGSTALKDNPFSSESLQYSSTSRHEPES 273
           +FPL +T ++++PF      Y S S  +  S
Sbjct: 107 LFPLNNTDMENDPFIVNGDDYRSRSNQQKSS 137


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 337 FKAVEPKGKIIGTMINGICPL 399
           FK ++ KGK+IG  + G+  L
Sbjct: 498 FKTLQLKGKLIGNALEGVARL 518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,336,836
Number of Sequences: 5004
Number of extensions: 47198
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)