Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10g20
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11910.1 68417.m01894 expressed protein hypothetical protein ...    30   0.91 
At1g77360.1 68414.m09009 pentatricopeptide (PPR) repeat-containi...    30   1.2  
At2g45400.1 68415.m05646 dihydroflavonol 4-reductase family / di...    29   2.8  
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    28   4.9  
At4g33910.1 68417.m04812 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   6.4  
At3g48230.1 68416.m05262 expressed protein several hypothetical ...    27   6.4  
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ...    27   6.4  

>At4g11910.1 68417.m01894 expressed protein hypothetical protein
           F7H19.100 -Arabidopsis thaliana,PID:e1310060
          Length = 466

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 35  HIKLCR*HLFILLKKRYRYYIFGKKRPKAITAFA 136
           H  +   H F+ L  + RYYIF K+ P  + AFA
Sbjct: 130 HCHISGGHFFLNLIAKLRYYIFCKELPVVLEAFA 163


>At1g77360.1 68414.m09009 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 481

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 4/124 (3%)
 Frame = +1

Query: 184 ITANDEEEIMDLLKRTFFIDEPLNEAVGLYDSGSCLEVEEYCRDSLLKGLSFKAVEPKGK 363
           I   +++E  D+ ++   + EP  +   +     C + E    D + K +  K V P   
Sbjct: 352 IERGEKDEAFDVFRKMIKVCEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMH 411

Query: 364 IIGTMINGIC----PLXXXXXXNSLLNQALRCPNPKFQRILHILARREEGAKLAEKFPSD 531
               +ING+C              ++   +R     F R+  +L + E    L  KF ++
Sbjct: 412 TFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQLLIKEEREDVL--KFLNE 469

Query: 532 KVFV 543
           K+ V
Sbjct: 470 KMNV 473


>At2g45400.1 68415.m05646 dihydroflavonol 4-reductase family /
           dihydrokaempferol 4-reductase family similar to
           dihydroflavonol 4-reductase (SP:P51102), vestitone
           reductase (Medicago sativa, GI:973249)
          Length = 364

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 341 LKDNPFSSESLQYSSTSRHEPESYNP 264
           L + PF+SE LQ  +   +EPES+ P
Sbjct: 82  LTELPFASERLQIFTADLNEPESFKP 107


>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 325 SVANPCNIPLPLDMSRNHITLLP 257
           SV NP N+P     S +H+TLLP
Sbjct: 460 SVDNPLNLPSDPPSSGDHVTLLP 482


>At4g33910.1 68417.m04812 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to prolyl 4-hydroxylase, alpha
           subunit, from Gallus gallus [GI:212530], Rattus
           norvegicus [GI:474940], Drosophila melanogaster
           [GI:4336512]; contains PF03171 2OG-Fe(II) oxygenase
           superfamily domain
          Length = 288

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 253 NEAVGLYDSGSCLEVEEYCRDSLLKGLSFKAVEPKGKIIGTMINGICPL 399
           N  +G YD   C+ ++   R     GL F +V P G I  T ++G CP+
Sbjct: 224 NMGIG-YDYKQCIGLKVKPRKG--DGLLFYSVFPNGTIDQTSLHGSCPV 269


>At3g48230.1 68416.m05262 expressed protein several hypothetical
           proteins - Arabidopsis thaliana contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 373

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 396 WTYSIDHGTNDFSL 355
           W  S++HGTN+FSL
Sbjct: 145 WNPSVEHGTNEFSL 158


>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
           Helicase [Arabidopsis thaliana] GI:10944747
          Length = 606

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = -1

Query: 255 VQGFVDEECSFK*VHYFLLIVSSNRKDSKSRFFGHNYLLIAKAVIAFGRFLPKI**RYLF 76
           V  F++E+C  K V+Y   + +  R D + R +    + I  A IAFG  + K   R++ 
Sbjct: 443 VAKFLNEKCKVKTVYYHAGVPAKQRVDVQ-RKWQTGEVRIVCATIAFGMGIDKADVRFVI 501

Query: 75  LSKINK 58
            + ++K
Sbjct: 502 HNTLSK 507


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,937,686
Number of Sequences: 28952
Number of extensions: 238266
Number of successful extensions: 557
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)