Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10g19
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    44   2e-05
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    28   0.82 
SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|c...    28   0.82 
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    28   1.1  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        27   1.9  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   2.5  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    26   4.4  
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc...    25   7.7  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   7.7  
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    25   7.7  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   7.7  

>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 22/101 (21%), Positives = 53/101 (52%)
 Frame = +1

Query: 256 ESVKKIFSVAHLGQKEFHTLVKKELVNRVKRHQYDENSAENKIARLTAYIRCIQNIMEKN 435
           ES+ +IF++ +   K      K+  V    R++ D  S E + A  T+ I  + +  + +
Sbjct: 177 ESIHRIFNIENSNSKTLRLNNKQLAVESFARNERDTGSPEVQAAVYTSRILALSDHCKNH 236

Query: 436 PRNSKMKQTVQEMIDRRKKLLKYLRQYDYKKFEWLLXKLNI 558
            ++   K+ ++  + +R+++LKYLR+ ++ ++   +  L +
Sbjct: 237 KKDQTGKRMLRYYVHQRQRMLKYLRKVNFDRYVHCIKNLGL 277


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 19/69 (27%), Positives = 35/69 (50%)
 Frame = +1

Query: 172 GDLEGLPPIPENSIADIYALSEEIKDAPESVKKIFSVAHLGQKEFHTLVKKELVNRVKRH 351
           G  E +P       A + A+S E ++  +S ++    + L  + F +L +   + R KRH
Sbjct: 2   GQGESIPSRQIQRDASMQAVSSESENINDSDRQNSGFSRLWNR-FPSLQRVLGLRRAKRH 60

Query: 352 QYDENSAEN 378
           + DE ++EN
Sbjct: 61  RNDEGNSEN 69


>SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 134

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = +1

Query: 313 LVKKELVNRVKRHQYDENSAENKIARLTAYIRCIQNIMEKNPRNSKMKQT 462
           L+  E+  RV     +ENS   KI +   ++  +++++E  P N+++++T
Sbjct: 46  LLAGEIYGRVCFWLKEENSQHPKIKKAHRHLEQLKSLLESLPTNNELEET 95


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 148 PAYKPEKSGDLEGLPPIPENSIADIYALSEEIKD 249
           P  KPEKS   +  PP+PEN   D   L   + +
Sbjct: 450 PENKPEKSSTSK--PPVPENKAEDSVVLKSSVPE 481


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +1

Query: 202  ENSIADIYALSEEIKDAPESVKKI 273
            EN+I +I A++EE+K+  E V KI
Sbjct: 939  ENAIKEISAIAEEVKNLVEKVIKI 962


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +1

Query: 205  NSIADI--YALSEEIKDAPESVKKIFSVAHLGQKEFHTLVKKELVNRVKRHQYDENSAEN 378
            N++ DI  +A  E+  DA     ++F    L  K+F    + +L+       Y ENS EN
Sbjct: 864  NAMGDIIQFAYGEDGLDATLVEYQVFDSLRLSTKQFEKKYRIDLMEDRSLSLYMENSIEN 923


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 23/115 (20%), Positives = 52/115 (45%)
 Frame = +1

Query: 160 PEKSGDLEGLPPIPENSIADIYALSEEIKDAPESVKKIFSVAHLGQKEFHTLVKKELVNR 339
           PE+S   + L         D+Y  +E +K   E +      A    +E  + ++  L  R
Sbjct: 250 PEESEPEKELKATFNQQNQDLYNQTEALKSTNEELINQIKSA----EELDSAIQV-LEER 304

Query: 340 VKRHQYDENSAENKIARLTAYIRCIQNIMEKNPRNSKMKQTVQEMIDRRKKLLKY 504
            +  Q DE   ++ ++ + + +    N+M++   N + K++  +++  ++  LKY
Sbjct: 305 YRTMQRDEVKFQSAMSGMKSKMESRTNLMKQLQVNIEEKESQLQLLKEKRDSLKY 359


>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 388 LQSYFQLSFHHTDASSLC 335
           L+  F++ + H+DASS+C
Sbjct: 313 LKKAFEIEYKHSDASSVC 330


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -2

Query: 509 RKYFNSFFLRSIISCTVCFIFEFLGFFSIMFCIQRMYAVNLAILF 375
           R   +   +  IIS  + F+     FFSI    Q +  +N+ ++F
Sbjct: 80  RLVLSKVLITHIISAFLSFLSAIFVFFSIFLVNQAVNIINIIVVF 124


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 265 KKIFSVAH-LGQKEFHTLVKKELVNRVKRHQYDENS 369
           K+I+ + H LG++    LV     N V  H +D+NS
Sbjct: 178 KEIYRIDHYLGKEMVQNLVHLRFCNPVISHLWDKNS 213


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 19/83 (22%), Positives = 40/83 (48%)
 Frame = +1

Query: 232  SEEIKDAPESVKKIFSVAHLGQKEFHTLVKKELVNRVKRHQYDENSAENKIARLTAYIRC 411
            S ++    +S++    + H   +E H  + K L  ++K    +E+ + +   +LTA    
Sbjct: 901  SAQLNSGLKSLEAEKQLLHTENEELHIRLDK-LTGKLK---IEESKSSDLGKKLTARQEE 956

Query: 412  IQNIMEKNPRNSKMKQTVQEMID 480
            I N+ E+N   S+   +V+  +D
Sbjct: 957  ISNLKEENMSQSQAITSVKSKLD 979


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,317
Number of Sequences: 5004
Number of extensions: 47955
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)