Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10g19
(564 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0541 - 3874476-3874694,3874816-3874868,3875944-3876055,387... 54 6e-08
06_01_0531 - 3836420-3836638,3836760-3836812,3837888-3837999,383... 54 6e-08
02_05_1120 + 34257504-34258294,34258483-34258571,34258616-342587... 45 4e-05
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 28 4.5
12_02_0590 - 20853040-20853081,20853694-20853918,20854995-208558... 28 5.9
12_02_0349 - 17820352-17821238,17822976-17823363 27 7.8
04_04_0012 + 22145111-22146388 27 7.8
04_03_0833 + 20147242-20147849,20147937-20148081,20148157-201482... 27 7.8
>06_01_0541 -
3874476-3874694,3874816-3874868,3875944-3876055,
3876143-3876321,3876358-3877195
Length = 466
Score = 54.4 bits (125), Expect = 6e-08
Identities = 32/105 (30%), Positives = 56/105 (53%)
Frame = +1
Query: 244 KDAPESVKKIFSVAHLGQKEFHTLVKKELVNRVKRHQYDENSAENKIARLTAYIRCIQNI 423
K E V++ F H+ E + + + K + D SA ++A+LT I+ +
Sbjct: 331 KPQQELVERYFHPDHMSSAEKMKQELQSVRDEFKMSENDCGSARVQVAQLTTKIKHLSTT 390
Query: 424 MEKNPRNSKMKQTVQEMIDRRKKLLKYLRQYDYKKFEWLLXKLNI 558
+ K ++S+ + +QEM+ RRKK LKYLR+ D+ + +L KL +
Sbjct: 391 LHKKDKHSR--KGLQEMVQRRKKYLKYLRRTDWDSYCLVLSKLGL 433
>06_01_0531 -
3836420-3836638,3836760-3836812,3837888-3837999,
3838087-3838265,3838302-3839139
Length = 466
Score = 54.4 bits (125), Expect = 6e-08
Identities = 32/105 (30%), Positives = 56/105 (53%)
Frame = +1
Query: 244 KDAPESVKKIFSVAHLGQKEFHTLVKKELVNRVKRHQYDENSAENKIARLTAYIRCIQNI 423
K E V++ F H+ E + + + K + D SA ++A+LT I+ +
Sbjct: 331 KPQQELVERYFHPDHMSSAEKMKQELQSVRDEFKMSENDCGSARVQVAQLTTKIKHLSTT 390
Query: 424 MEKNPRNSKMKQTVQEMIDRRKKLLKYLRQYDYKKFEWLLXKLNI 558
+ K ++S+ + +QEM+ RRKK LKYLR+ D+ + +L KL +
Sbjct: 391 LHKKDKHSR--KGLQEMVQRRKKYLKYLRRTDWDSYCLVLSKLGL 433
>02_05_1120 +
34257504-34258294,34258483-34258571,34258616-34258713,
34259269-34259292,34259314-34259404,34259761-34259813,
34259933-34260151
Length = 454
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/59 (35%), Positives = 39/59 (66%)
Frame = +1
Query: 382 IARLTAYIRCIQNIMEKNPRNSKMKQTVQEMIDRRKKLLKYLRQYDYKKFEWLLXKLNI 558
+A+LT I+ + ++ K ++S+ + +Q+M+ RRKK LKYLR+ D+ + +L KL +
Sbjct: 365 VAQLTVKIKHLSTVLHKKDKHSR--KGLQDMVQRRKKYLKYLRRTDWDSYCLVLSKLGL 421
>01_05_0117 -
18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = -3
Query: 361 HHTDASSLCLLVLS*PMCEILFVQDVPQKIFFLPI 257
HH +A LCLL L C I F+ D P +F LPI
Sbjct: 519 HHLNAIGLCLLSLLVYYC-INFLSDSPM-LFLLPI 551
>12_02_0590 -
20853040-20853081,20853694-20853918,20854995-20855886,
20856120-20856122,20856284-20856513
Length = 463
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 340 VKRHQYDENSAENKIARLTAYIRCIQNIMEKNPRNSKMKQTVQEMID 480
V+R +D +A A+ +RC + EK PR K K+ +EM++
Sbjct: 28 VRRPSWDGGAAVGGRAKGFGVVRCC--VQEKKPRVRKTKEERREMVE 72
>12_02_0349 - 17820352-17821238,17822976-17823363
Length = 424
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 229 LSEEIKDAPESVKKIFSVAHLGQKEFHTLVKKELVNRVKRHQYDENSAENKIA 387
L E+ + E+V+ + H + E H L ++ RVK H YD +A A
Sbjct: 249 LEEQGEFDREAVRLAMQLVHEAETEKHALQRQLDAFRVKAHLYDYEAAATAAA 301
>04_04_0012 + 22145111-22146388
Length = 425
Score = 27.5 bits (58), Expect = 7.8
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Frame = +1
Query: 226 ALSEEIKDAPESVKKIFSVAHLGQKEFHTLVKKEL-VNRVKRHQYDENSAENKIARLTAY 402
A ++E KDA ES+ ++ V L KEL + + + EN AE ++ L
Sbjct: 17 AKAQEAKDASESISILYRVLQDPSSSAEALRTKELAITNLTNYLTKENRAE-ELRNLLTQ 75
Query: 403 IRCIQNIMEKNPRNSKMKQTVQEMIDRRKKL 495
+R +++ K +K + V+ +ID K+
Sbjct: 76 LRPFFSLIPK----AKTAKIVRGIIDAVAKI 102
>04_03_0833 +
20147242-20147849,20147937-20148081,20148157-20148210,
20148297-20148388,20148957-20149093,20149210-20149464,
20149598-20149771,20149863-20149960
Length = 520
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 258 IGKKNIFCGTSWTKRISHIGQERTSKQS 341
+G +NIFCG +W +S G +R S S
Sbjct: 274 VGGRNIFCGDTW---VSATGTDRASTYS 298
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,210,637
Number of Sequences: 37544
Number of extensions: 258919
Number of successful extensions: 715
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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