Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10g19
         (564 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41605| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.070
SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.37 
SB_20558| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.65 
SB_31644| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_24482| Best HMM Match : KID (HMM E-Value=0.045)                     30   1.1  
SB_20589| Best HMM Match : Ribosomal_S15 (HMM E-Value=3.3)             29   2.6  
SB_6032| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_18705| Best HMM Match : DUF718 (HMM E-Value=2.3)                    29   3.5  
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)                   28   4.6  
SB_35419| Best HMM Match : SMC_C (HMM E-Value=1.9e-05)                 28   4.6  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     28   6.1  
SB_23274| Best HMM Match : DUF624 (HMM E-Value=9.3)                    28   6.1  
SB_40784| Best HMM Match : TGF_beta (HMM E-Value=6.40393e-43)          27   8.0  
SB_39323| Best HMM Match : PPR (HMM E-Value=7.8)                       27   8.0  
SB_32300| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)              27   8.0  
SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064)                  27   8.0  
SB_21411| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_41605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 34.3 bits (75), Expect = 0.070
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = +1

Query: 424 MEKNPRNSKMKQTVQEMIDRRKKLLKYLRQYDYKKFEWLLXKLNI 558
           M++ P++   K  +  + D+RKK LK+L+  D+  +  LL +LNI
Sbjct: 1   MKERPKDKHNKVFLHWLTDQRKKKLKHLKNKDFPGYLQLLQELNI 45


>SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
 Frame = +1

Query: 238 EIKDAPESVK-KIFSVAHLGQKEFHTLVKK--ELVNRVKRHQYDENSAENKIARLTAYIR 408
           E+ D P++V  ++  V +    E  +L KK  EL N  K  +     AE +I  L     
Sbjct: 660 EMSDTPDNVSNQVEKVVN----ELKSLKKKHEELENSSKGAERRSKEAEKRIENLEQECA 715

Query: 409 CIQNI-MEKNPRNSKMKQTVQEMIDRRKKLLKYLRQ 513
              ++ MEK+   S++K+T+++ ID+  K    LR+
Sbjct: 716 SANDMAMEKSVELSRLKRTIEKKIDKLTKENSELRR 751


>SB_20558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +1

Query: 424 MEKNPRNSKMKQTVQEMIDRRKKLLKYLRQYDYKKFEWLLXKLNI 558
           +E   R+   K  +  + D+RKK LK+L+  D+  +  LL +LNI
Sbjct: 60  LENANRDKHNKVFLHWLTDQRKKKLKHLKNKDFPGYLQLLQELNI 104


>SB_31644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 935

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/108 (19%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
 Frame = +1

Query: 214 ADIYALSEEIKDAPESVKKIFSVAHLGQKEFHTLVKKELVNRVKRHQYDENSAENKIARL 393
           A + +  EE++      + +      G  E     +  L+    RH+ DE +      RL
Sbjct: 281 ASLSSKQEELESVRAQEELVLKEVERGIAEEMKTTRARLIEAEARHEQDERTIAELTQRL 340

Query: 394 TAYIRCIQ----NIMEKNPRNSKMKQTVQEMIDRRKKLLKYLRQYDYK 525
             + R  +     I E N + S  ++ V + I++ ++ L+ L+ +  +
Sbjct: 341 REWGRQSEAVNAQIREANTKQSAAREQVTQYIEKLERELRNLKNHQQR 388


>SB_24482| Best HMM Match : KID (HMM E-Value=0.045)
          Length = 1714

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
 Frame = +1

Query: 268  KIFSVAHLGQKEFHTLVKKELVNRVKRHQYDENSAENKIARLTAYIRCIQNIMEKNPRNS 447
            K+F +  L  ++   + KK++   V+     ENS   K   L   I+     ME+  +  
Sbjct: 1325 KVFRMEVLRLRQLAKVTKKDISTSVEIESESENSEGEK---LQMSIKTASEKMEQLRKEM 1381

Query: 448  KMKQTVQEMIDRRKKLLKYLRQYDYKKFEWLLXKL-NIE 561
            + KQ ++E + R++  +  L     K+F  +  +L NIE
Sbjct: 1382 QEKQELEETLRRKEDEIAELMTSTDKRFSEIQHELANIE 1420


>SB_20589| Best HMM Match : Ribosomal_S15 (HMM E-Value=3.3)
          Length = 99

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 472 MIDRRKKLLKYLRQYDYKKFEWLLXKLNI 558
           + D+RKK LK+L+  D+  +  LL +LNI
Sbjct: 34  LTDQRKKKLKHLKNKDFPGYLQLLQELNI 62


>SB_6032| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 472 MIDRRKKLLKYLRQYDYKKFEWLLXKLNI 558
           + D+RKK LK+L+  D+  +  LL +LNI
Sbjct: 11  LTDQRKKKLKHLKNKDFPGYLQLLQELNI 39


>SB_18705| Best HMM Match : DUF718 (HMM E-Value=2.3)
          Length = 650

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/72 (22%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +1

Query: 304 FHTLVKKELVNRVKRHQYDENSAENKIARLTAYIRCIQNIMEKNP-RNSKMKQTVQEMID 480
           F  L + ++   +K HQ  +N  E+++ +     +  QN+ E+   +N K  Q +Q++  
Sbjct: 512 FQYLKEHQVFQYLKEHQVFQNLREHQVFQYLKEHQVFQNLKERQVLQNLKEHQVLQKL-- 569

Query: 481 RRKKLLKYLRQY 516
            + ++ +YL+++
Sbjct: 570 TKHQVFQYLKEH 581


>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
          Length = 3035

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 249  CSRIGKKNIFCGTSWTKRISHI 314
            C+R GK+ + CG+ W +  +H+
Sbjct: 1393 CARYGKRPVGCGSEWKRTHAHL 1414


>SB_35419| Best HMM Match : SMC_C (HMM E-Value=1.9e-05)
          Length = 867

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 20/121 (16%), Positives = 49/121 (40%), Gaps = 7/121 (5%)
 Frame = +1

Query: 175 DLEGLPPIPENSIADIYALSEEIKDAPESVKKIFSVAHLGQKEFHTLVKKELVNRVKRHQ 354
           +++ L    E  + D+  L EE+ +  + + ++       ++EF  + +K     +K+ +
Sbjct: 505 EIKELENFEEEELPDVTTLEEEVVNITQQIAELKEQKTKLEEEFEAIKEKHQKQELKKQR 564

Query: 355 YDENSAENKIARLTAYIRCIQN-------IMEKNPRNSKMKQTVQEMIDRRKKLLKYLRQ 513
           + E   + +   +   +    N       + E     SK +++V EM  + +       Q
Sbjct: 565 FKEKMEKKQEETMVEILTAKNNRKHYSDKVQENKDAISKAEKSVVEMTRKIESTTAMAAQ 624

Query: 514 Y 516
           Y
Sbjct: 625 Y 625


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +1

Query: 235 EEIKDAPESVKKIFSVAHLGQKEFHTLVKKELVNRVKRHQYDENSAENKIARLTAYIRCI 414
           E +++     K+ F   HL +KE    V K  + ++K+HQ+D    E    R    +   
Sbjct: 642 EAMEEEQRKNKRYFK-NHLNEKEKEIEVLKVEIMKLKKHQFDNLVEEVSSVRAELAMEAA 700

Query: 415 QNIME 429
           Q I E
Sbjct: 701 QKIDE 705


>SB_23274| Best HMM Match : DUF624 (HMM E-Value=9.3)
          Length = 182

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +1

Query: 136 PEYVPAYKPEKSGDLEGLPPIPENSIADIYALSEEIKDAPESVKKIFSV 282
           PEY   YK +    L G P + E +   I   S       ES  +IFS+
Sbjct: 43  PEYHSVYKSDSRQSLIGFPVLSEINPTSIIRRSPGYYSVHESGSRIFSI 91


>SB_40784| Best HMM Match : TGF_beta (HMM E-Value=6.40393e-43)
          Length = 1402

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 30/150 (20%), Positives = 66/150 (44%), Gaps = 8/150 (5%)
 Frame = +1

Query: 88  IQSRGLKHQVNIKWVRPEYVPAYKPEKSGDLEGLPPIPENSIADIYALSEEIKDAPESVK 267
           +Q    + Q N   +  E + + + E + +   L  + E   A     SEEI      V+
Sbjct: 25  LQVSASREQAN-SIILQERLTSCEQELASERHRLQELMEEKKAFENVKSEEITKLNNEVR 83

Query: 268 KIFSVAHLGQKEFHTLVKKELVNRVKRHQYDENSAEN----KIARLTAYIRCI-QNIMEK 432
           +  S+    ++EF+   ++E+       Q   NS  N    ++ +L   +  + + + EK
Sbjct: 84  EARSLLQQKEQEFYQQAEQEMRRVASEEQEKSNSRLNIILFEVNKLNVQVETLNRELAEK 143

Query: 433 NPR---NSKMKQTVQEMIDRRKKLLKYLRQ 513
           + +    +K + ++QE I+ R + +  +R+
Sbjct: 144 DSQLEELNKERTSLQEAIELRDREVSVVRE 173


>SB_39323| Best HMM Match : PPR (HMM E-Value=7.8)
          Length = 493

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 67  RRFACSAIQSRGLKHQVNIKWVRP 138
           R F C+  Q R    Q N+ W++P
Sbjct: 380 RPFPCAPSQRRSYNSQANVAWIKP 403


>SB_32300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 676

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 30/150 (20%), Positives = 66/150 (44%), Gaps = 8/150 (5%)
 Frame = +1

Query: 88  IQSRGLKHQVNIKWVRPEYVPAYKPEKSGDLEGLPPIPENSIADIYALSEEIKDAPESVK 267
           +Q    + Q N   +  E + + + E + +   L  + E   A     SEEI      V+
Sbjct: 331 LQVSASREQAN-SIILQERLTSCEQELASERHRLQELMEEKKAFENVKSEEITKLNNEVR 389

Query: 268 KIFSVAHLGQKEFHTLVKKELVNRVKRHQYDENSAEN----KIARLTAYIRCI-QNIMEK 432
           +  S+    ++EF+   ++E+       Q   NS  N    ++ +L   +  + + + EK
Sbjct: 390 EARSLLQQKEQEFYQQAEQEMRRVASEEQEKSNSRLNIILFEVNKLNVQVETLNRELAEK 449

Query: 433 NPR---NSKMKQTVQEMIDRRKKLLKYLRQ 513
           + +    +K + ++QE I+ R + +  +R+
Sbjct: 450 DSQLEELNKERTSLQEAIELRDREVSVVRE 479


>SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)
          Length = 1222

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 14/79 (17%)
 Frame = +1

Query: 307 HTLVKKELVNR---VKRHQYDENSAEN---KIARLTAYIRCIQNIMEKNP-----RNSKM 453
           HT + K LV     +KRH+  EN A+N     A+L    R +    E NP     R    
Sbjct: 702 HTGIGKSLVKAEALLKRHEEFENIAQNTYTNAAKLLEAARHLAQSGECNPEEIQKRVDYF 761

Query: 454 KQTVQEMI---DRRKKLLK 501
           ++ VQE I   +RRK LLK
Sbjct: 762 EKRVQEFIGRVNRRKGLLK 780


>SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064)
          Length = 265

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +1

Query: 163 EKSGDLEGLPPIPENSIADIYALSEEIKDAPESVKKIFSV-AHLG-QKEFHTLVKKELVN 336
           +K  +  G P    N+  D +   EE K    S +K+  +  H   +K  H   KKE  +
Sbjct: 75  KKKKEKRGGPSRHNNASEDSFDSGEEEKRNKNSARKMSPINGHKSSRKSRHKSDKKERAS 134

Query: 337 RVKRHQYDEN 366
           R +RH   E+
Sbjct: 135 RKRRHSRSES 144


>SB_21411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
 Frame = +1

Query: 358 DENSAENKIARLTAYI------RCIQNIMEKNPRNSKMKQTVQEMIDRRKKLLKYLRQYD 519
           DEN  +    R  AYI        + +  +    N  + + VQE +DR ++LLK  ++ D
Sbjct: 150 DENDVDALCDRAEAYILEEMYNEAVNDFQKAKSINEHLHK-VQEGLDRAQRLLKQSQKRD 208

Query: 520 YKKFEWLLXKLN 555
           Y K   L    N
Sbjct: 209 YYKILGLKRNCN 220


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,066,102
Number of Sequences: 59808
Number of extensions: 316569
Number of successful extensions: 870
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)