Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10g18
(433 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705 32 0.17
03_05_0248 + 22348504-22348568,22349064-22349371,22349476-223500... 29 1.2
10_02_0174 - 6202334-6204922 29 2.1
05_01_0318 - 2488529-2489196,2489773-2490372,2490620-2490773,249... 28 2.8
06_03_0473 + 21190878-21191188,21191269-21192355,21192972-211931... 27 4.9
01_06_1342 - 36438869-36439459,36439567-36439627,36440751-364411... 27 4.9
10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676 27 8.6
07_03_0060 + 12927697-12927830,12928042-12928315 27 8.6
>01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705
Length = 1172
Score = 32.3 bits (70), Expect = 0.17
Identities = 22/71 (30%), Positives = 29/71 (40%)
Frame = +1
Query: 169 MENPLTSTPALSRISIGGSSNTSIRRRSLIPQNRVANSRNEECNDDDAERSSLVASDRVV 348
M L+S P R S S + + R SL+P R + R C R+S A D V
Sbjct: 1 MATSLSSAPTQLRPSPSPSHHRLLHRSSLLPFPRRHHHRRRRCGALSIARASASAKDGVT 60
Query: 349 ASTPQASPRRG 381
A+P G
Sbjct: 61 VRRFPAAPTEG 71
>03_05_0248 +
22348504-22348568,22349064-22349371,22349476-22350039,
22350082-22350128,22351244-22351715,22352349-22352611
Length = 572
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 265 NRVANSRNEECNDDDAERSSLVASDRVVASTPQASPRRGRE 387
NR +S ++ + D AE SS SD + T + +PRRGR+
Sbjct: 47 NRNVSSMAKKSSQDVAEGSSDDESDGETSKTKKRAPRRGRK 87
>10_02_0174 - 6202334-6204922
Length = 862
Score = 28.7 bits (61), Expect = 2.1
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 280 SRNEECNDDDAE--RSSLVASDRVVASTPQASPRRGRETMSSSPQKEHFQGCL 432
S+ EEC+D+D E R+ + D +A+ R PQK H++G L
Sbjct: 656 SQREECSDEDEEDRRNRDILKDNKDDPFSEAARREYPLFFEFIPQKPHYRGLL 708
>05_01_0318 - 2488529-2489196,2489773-2490372,2490620-2490773,
2490996-2491085,2491926-2492061,2492159-2492418,
2493448-2493846,2494482-2494661,2494728-2494922,
2496614-2496678,2497186-2497321,2497442-2497483,
2498351-2498689
Length = 1087
Score = 28.3 bits (60), Expect = 2.8
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 259 PQNRVANS--RNEECNDDDAERSSLVASDRVVASTPQASPRRGRETMSSSPQKEHF 420
PQN + + R +E D+ + +D VV TP+ +PR R SS Q+ F
Sbjct: 950 PQNVLLTTKRRRKEVVYSDSFGDQWMKADDVVEETPRMAPRAKRSAYSSDVQEVDF 1005
>06_03_0473 + 21190878-21191188,21191269-21192355,21192972-21193194,
21193286-21193356,21193385-21193441,21193442-21194056,
21194168-21194237,21194470-21194745,21194916-21195130,
21195224-21195529,21195750-21195813,21195902-21196141,
21196306-21196415
Length = 1214
Score = 27.5 bits (58), Expect = 4.9
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 169 MENPLTSTPAL-SRISIGGSSNTSIRRRSLIPQNRVANSRNEECNDDDAERSSLVASDRV 345
++ + STPAL + SN S+ +R L RV RN+ D+A S A+D +
Sbjct: 1084 LQTAIRSTPALLDTVVSDDGSNWSVGQRQLFCLGRVLLRRNKILVLDEATASIDSATDAI 1143
Query: 346 V 348
+
Sbjct: 1144 I 1144
>01_06_1342 -
36438869-36439459,36439567-36439627,36440751-36441130,
36441955-36442761
Length = 612
Score = 27.5 bits (58), Expect = 4.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 359 HRHLHVVEGRLCLHHHRKNISKVAL 433
H H H G L LHHH ++++ A+
Sbjct: 21 HHHHHGHAGHLLLHHHPQHVAGAAV 45
>10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676
Length = 1098
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +1
Query: 148 RRLKWKMMENPLTSTPALSRISIGGSSNTSIRRRSLIPQNRVANSRNEECNDDDAERSSL 327
R + K + + +SRI +GGS N + R+ +PQ + +++ D E+ +
Sbjct: 771 RETRVKELPKEVEQLKLISRI-LGGSKNKNPRKGLRLPQEKSKKQQHKSMLTQDKEKEGM 829
Query: 328 VA 333
A
Sbjct: 830 KA 831
>07_03_0060 + 12927697-12927830,12928042-12928315
Length = 135
Score = 26.6 bits (56), Expect = 8.6
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +1
Query: 220 GSSNTSIRRRSLIPQNRVANSRNEECNDDDAERSSLVASDRVVASTPQASPRRGRETMSS 399
GS +T R +I +R + R +E RSSL ++ + A+ P A +R S
Sbjct: 56 GSDSTCRRSSWVISTSRTTSLRQKESLSKMRSRSSLPSAVLLCANDPAAEIQRFAADSLS 115
Query: 400 SPQKE 414
+P ++
Sbjct: 116 NPYRK 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.127 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,524,867
Number of Sequences: 37544
Number of extensions: 184332
Number of successful extensions: 642
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -