Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10g18
(433 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical p... 32 0.15
Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical pr... 32 0.15
Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical pr... 32 0.15
AF003138-1|AAK21371.3| 469|Caenorhabditis elegans Hypothetical ... 30 0.62
Z83110-6|CAB05528.3| 545|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z81462-8|CAB03846.3| 545|Caenorhabditis elegans Hypothetical pr... 29 1.4
AC006651-12|AAM48541.1| 231|Caenorhabditis elegans Hypothetical... 29 1.4
AC006651-11|AAM48540.1| 428|Caenorhabditis elegans Hypothetical... 29 1.4
AC006651-10|AAF39866.2| 456|Caenorhabditis elegans Hypothetical... 29 1.4
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 29 1.9
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 29 1.9
AF003142-3|AAB54188.1| 739|Caenorhabditis elegans Him-three par... 29 1.9
U64843-16|AAX55689.1| 442|Caenorhabditis elegans Modulation of ... 28 2.5
U64843-15|AAF98227.2| 489|Caenorhabditis elegans Modulation of ... 28 2.5
U64843-14|AAM45353.1| 475|Caenorhabditis elegans Modulation of ... 28 2.5
AF303088-1|AAG36975.1| 489|Caenorhabditis elegans serotonin-gat... 28 2.5
Z75533-3|CAA99822.1| 868|Caenorhabditis elegans Hypothetical pr... 27 4.4
U40419-8|AAA81428.3| 673|Caenorhabditis elegans Hypothetical pr... 27 4.4
Z99286-2|CAH60793.1| 310|Caenorhabditis elegans Hypothetical pr... 27 5.8
>Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical
protein C53B4.4e protein.
Length = 1544
Score = 32.3 bits (70), Expect = 0.15
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +1
Query: 220 GSSNTSIRRRSLIPQNRVANSRNEECNDDDAERSSLVASDRVVASTPQASPRR 378
GS N + SLI N VAN R + DDD + A D + +T A+ RR
Sbjct: 663 GSVNDTADSTSLISNNSVANDR-DSLKDDDKTIGGIPAKDGKINATALAARRR 714
>Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical
protein C53B4.4b protein.
Length = 1586
Score = 32.3 bits (70), Expect = 0.15
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +1
Query: 220 GSSNTSIRRRSLIPQNRVANSRNEECNDDDAERSSLVASDRVVASTPQASPRR 378
GS N + SLI N VAN R + DDD + A D + +T A+ RR
Sbjct: 663 GSVNDTADSTSLISNNSVANDR-DSLKDDDKTIGGIPAKDGKINATALAARRR 714
>Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical
protein C53B4.4a protein.
Length = 1584
Score = 32.3 bits (70), Expect = 0.15
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +1
Query: 220 GSSNTSIRRRSLIPQNRVANSRNEECNDDDAERSSLVASDRVVASTPQASPRR 378
GS N + SLI N VAN R + DDD + A D + +T A+ RR
Sbjct: 663 GSVNDTADSTSLISNNSVANDR-DSLKDDDKTIGGIPAKDGKINATALAARRR 714
>AF003138-1|AAK21371.3| 469|Caenorhabditis elegans Hypothetical
protein F12B6.3 protein.
Length = 469
Score = 30.3 bits (65), Expect = 0.62
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 112 CVIIIEKYEYNSRRLKWKMMENPLTSTPALS 204
C ++ E Y YN+ + M NP+T P +S
Sbjct: 169 CQLVFESYSYNTASVSVNWMANPVTVLPEIS 199
>Z83110-6|CAB05528.3| 545|Caenorhabditis elegans Hypothetical
protein F57C2.6 protein.
Length = 545
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 211 SIGGSSNTSIRRRSLIPQNRVANSRNEECNDDDAERSSLVASD 339
++ SSN S RRR R++E DD E SS++++D
Sbjct: 307 NVSVSSNFSTRRRLFSAGGTPGAPRDDEDEADDVENSSMLSND 349
>Z81462-8|CAB03846.3| 545|Caenorhabditis elegans Hypothetical
protein F57C2.6 protein.
Length = 545
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 211 SIGGSSNTSIRRRSLIPQNRVANSRNEECNDDDAERSSLVASD 339
++ SSN S RRR R++E DD E SS++++D
Sbjct: 307 NVSVSSNFSTRRRLFSAGGTPGAPRDDEDEADDVENSSMLSND 349
>AC006651-12|AAM48541.1| 231|Caenorhabditis elegans Hypothetical
protein H06I04.1c protein.
Length = 231
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +1
Query: 127 EKYEYNSRRLKWKMMENPLTSTPALSRISIGGSSNTSIRRRSLIPQNRVANSRNEECND 303
+K ++ SR L K++EN L TP S + S + +SL ++R A SR + ND
Sbjct: 27 KKAKFASRELA-KILENDLCGTPTTSNLKNFESDDEFFEEKSLFEKSR-ALSRQQIPND 83
>AC006651-11|AAM48540.1| 428|Caenorhabditis elegans Hypothetical
protein H06I04.1b protein.
Length = 428
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +1
Query: 127 EKYEYNSRRLKWKMMENPLTSTPALSRISIGGSSNTSIRRRSLIPQNRVANSRNEECND 303
+K ++ SR L K++EN L TP S + S + +SL ++R A SR + ND
Sbjct: 224 KKAKFASRELA-KILENDLCGTPTTSNLKNFESDDEFFEEKSLFEKSR-ALSRQQIPND 280
>AC006651-10|AAF39866.2| 456|Caenorhabditis elegans Hypothetical
protein H06I04.1a protein.
Length = 456
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +1
Query: 127 EKYEYNSRRLKWKMMENPLTSTPALSRISIGGSSNTSIRRRSLIPQNRVANSRNEECND 303
+K ++ SR L K++EN L TP S + S + +SL ++R A SR + ND
Sbjct: 224 KKAKFASRELA-KILENDLCGTPTTSNLKNFESDDEFFEEKSLFEKSR-ALSRQQIPND 280
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 28.7 bits (61), Expect = 1.9
Identities = 21/55 (38%), Positives = 26/55 (47%)
Frame = +1
Query: 241 RRRSLIPQNRVANSRNEECNDDDAERSSLVASDRVVASTPQASPRRGRETMSSSP 405
RRRS P NR SR + + S +VAS R S P +R R + S SP
Sbjct: 457 RRRSPSPDNRQLGSRKQYSPLRRRQSSPMVASPRRRRS-PSPERQRKRRSPSDSP 510
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 28.7 bits (61), Expect = 1.9
Identities = 21/55 (38%), Positives = 26/55 (47%)
Frame = +1
Query: 241 RRRSLIPQNRVANSRNEECNDDDAERSSLVASDRVVASTPQASPRRGRETMSSSP 405
RRRS P NR SR + + S +VAS R S P +R R + S SP
Sbjct: 457 RRRSPSPDNRQLGSRKQYSPLRRRQSSPMVASPRRRRS-PSPERQRKRRSPSDSP 510
>AF003142-3|AAB54188.1| 739|Caenorhabditis elegans Him-three
paralog protein 3 protein.
Length = 739
Score = 28.7 bits (61), Expect = 1.9
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +1
Query: 247 RSLIPQNRVANSRNEECNDDDAERSSLVASD-----RVVASTPQASPRRGRETMSSSPQK 411
R L+P V + + EE NDDDA+ S + SD ++ + SP + E+ S+ P++
Sbjct: 412 RRLVPPVEV-DEQPEEQNDDDAQNSLQIDSDAQNSLQIDSDAIITSPEKRNESKSAIPEE 470
>U64843-16|AAX55689.1| 442|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 1, isoform c protein.
Length = 442
Score = 28.3 bits (60), Expect = 2.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 109 TCVIIIEKYEYNSRRLKWKMMENPLT 186
TC++I E Y +NS ++ ME +T
Sbjct: 172 TCILIFESYSHNSEEVELHWMEEAVT 197
>U64843-15|AAF98227.2| 489|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 1, isoform a protein.
Length = 489
Score = 28.3 bits (60), Expect = 2.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 109 TCVIIIEKYEYNSRRLKWKMMENPLT 186
TC++I E Y +NS ++ ME +T
Sbjct: 172 TCILIFESYSHNSEEVELHWMEEAVT 197
>U64843-14|AAM45353.1| 475|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 1, isoform b protein.
Length = 475
Score = 28.3 bits (60), Expect = 2.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 109 TCVIIIEKYEYNSRRLKWKMMENPLT 186
TC++I E Y +NS ++ ME +T
Sbjct: 172 TCILIFESYSHNSEEVELHWMEEAVT 197
>AF303088-1|AAG36975.1| 489|Caenorhabditis elegans serotonin-gated
chloride channel protein.
Length = 489
Score = 28.3 bits (60), Expect = 2.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 109 TCVIIIEKYEYNSRRLKWKMMENPLT 186
TC++I E Y +NS ++ ME +T
Sbjct: 172 TCILIFESYSHNSEEVELHWMEEAVT 197
>Z75533-3|CAA99822.1| 868|Caenorhabditis elegans Hypothetical
protein C54G4.4 protein.
Length = 868
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +1
Query: 268 RVANSRNEECNDDDAERSSLVASDRVVASTPQASPRRGRETMSSSPQKEHFQ 423
+ A S N D R L AS+ + +TP P+R + +P H +
Sbjct: 705 KFAKSTNHSNGDLSISRDKLNASNAAIYATPSIPPQRPDSVIYYAPTVAHME 756
>U40419-8|AAA81428.3| 673|Caenorhabditis elegans Hypothetical
protein C27F2.1 protein.
Length = 673
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 67 NTKKKELQTQRTFGNLNKLFG 5
N ++++ Q QR FG LNKL G
Sbjct: 148 NEEERQTQEQRAFGRLNKLRG 168
>Z99286-2|CAH60793.1| 310|Caenorhabditis elegans Hypothetical
protein Y7A9C.8 protein.
Length = 310
Score = 27.1 bits (57), Expect = 5.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 42 VCNSFFFVLVEYKFHFMFVFVIYL 113
+C +FF +L Y+F F F+I+L
Sbjct: 97 ICLAFFIILALYQFTETFHFIIFL 120
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.127 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,463,537
Number of Sequences: 27780
Number of extensions: 174584
Number of successful extensions: 648
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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