Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10g18
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   0.63 
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    23   1.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   5.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   7.8  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 0.63
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 253 LIPQNRVANSRNEECNDDDAERSSL 327
           L P  R ANS +    DD+  R+SL
Sbjct: 535 LCPHRRRANSGSTSSGDDELHRASL 559


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 130 KYEYNSRRLKWKMMENPLTSTP 195
           K  + +RR+KWK      T TP
Sbjct: 53  KIWFQNRRMKWKKENARATGTP 74


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 413 SFCGDEDIVSLPRRGDA 363
           SFCG  D+  +   GDA
Sbjct: 525 SFCGQLDVYKVETIGDA 541


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 366 ISTSWKGDYVFITTERTFPR 425
           I  SW+G+Y  +  +  F R
Sbjct: 248 IKVSWRGNYSCLKVDLIFTR 267


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 366 ISTSWKGDYVFITTERTFPR 425
           I  SW+G+Y  +  +  F R
Sbjct: 299 IKVSWRGNYSCLKVDLIFTR 318


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 366 ISTSWKGDYVFITTERTFPR 425
           I  SW+G+Y  +  +  F R
Sbjct: 248 IKVSWRGNYSCLKVDLIFTR 267


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 6/23 (26%), Positives = 11/23 (47%)
 Frame = +2

Query: 263 KIEWPIQEMRSAMMMMLKGHHLW 331
           K+ W  +E     M+ +   H+W
Sbjct: 89  KLRWEPKEYGGVKMLHVPSDHIW 111


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 6/23 (26%), Positives = 11/23 (47%)
 Frame = +2

Query: 263 KIEWPIQEMRSAMMMMLKGHHLW 331
           K+ W  +E     M+ +   H+W
Sbjct: 89  KLRWEPKEYGGVKMLHVPSDHIW 111


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 6/23 (26%), Positives = 12/23 (52%)
 Frame = +2

Query: 263 KIEWPIQEMRSAMMMMLKGHHLW 331
           K++W  +E     M+ +   H+W
Sbjct: 85  KLKWDPKEYGGVEMLHVPSDHIW 107


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 359 HRHLHVVEGRLCLHHHR 409
           HR L + +    LHHH+
Sbjct: 64  HRDLPIYQSHHHLHHHQ 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.127    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,577
Number of Sequences: 438
Number of extensions: 2319
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)