Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10g18
(433 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro... 30 0.78
At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protei... 27 0.98
At3g44350.1 68416.m04765 no apical meristem (NAM) family protein... 28 2.4
At3g12160.1 68416.m01516 Ras-related GTP-binding family protein ... 28 2.4
At3g23780.1 68416.m02989 DNA-directed RNA polymerase family prot... 27 4.1
At3g14190.1 68416.m01793 expressed protein 27 4.1
At5g46490.2 68418.m05725 disease resistance protein (TIR-NBS cla... 27 5.5
At4g17440.1 68417.m02610 expressed protein 27 5.5
At3g22380.1 68416.m02825 expressed protein 27 5.5
At3g18090.1 68416.m02300 DNA-directed RNA polymerase family prot... 27 5.5
At4g17670.1 68417.m02640 senescence-associated protein-related s... 27 7.2
At3g56780.1 68416.m06315 F-box family protein contains F-box dom... 27 7.2
At3g17750.1 68416.m02265 protein kinase family protein contains ... 27 7.2
At1g55050.1 68414.m06288 expressed protein ; expression supporte... 27 7.2
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 27 7.2
At5g17910.1 68418.m02100 expressed protein 26 9.6
At3g44720.1 68416.m04813 prephenate dehydratase family protein s... 26 9.6
At2g27690.1 68415.m03355 cytochrome P450, putative similar to Cy... 26 9.6
At1g61060.1 68414.m06874 F-box family protein contains Pfam prof... 26 9.6
At1g30930.1 68414.m03786 F-box family protein contains F-box dom... 26 9.6
At1g02700.1 68414.m00221 expressed protein similar to hypothetic... 26 9.6
>At2g25050.1 68415.m02996 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 1111
Score = 29.9 bits (64), Expect = 0.78
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +1
Query: 259 PQNRVANSRNEECNDDDAERSSLVASDRVVASTPQASPRRGRETMSS 399
P++ + S E + E++ L+ S+ +V+S +SP + ++TMSS
Sbjct: 372 PRSPDSRSLLESALEKVKEKTKLMISENIVSSPDTSSPEKEKDTMSS 418
>At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 758
Score = 27.1 bits (57), Expect(2) = 0.98
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 238 IRRRSLIPQNRVANSRNEECNDDDAERSSLVASDRVVASTPQASPRRGRETMSSSPQKEH 417
+ RR +NRVA N + +DD+A S S + + + R + SS + E
Sbjct: 411 LERRLANTENRVATDGNSKRSDDNALGSKTTRSLNEILGSSSSLTSRSDDKNVSSRRFES 470
Query: 418 FQG 426
QG
Sbjct: 471 SQG 473
Score = 21.0 bits (42), Expect(2) = 0.98
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 136 EYNSR-RLKWKMMENPLTSTPALSRISIGGSSNTSI 240
+Y+S L+ +++EN + LS+++ GGS S+
Sbjct: 348 DYSSDPELERRLVENEKKAQRWLSKVAQGGSDANSV 383
>At3g44350.1 68416.m04765 no apical meristem (NAM) family protein
Tobacco elicitor-responsive gene (TERN), NAC-domain
protein, Nicotiana tabacum, EMBL:AB021178
Length = 228
Score = 28.3 bits (60), Expect = 2.4
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +1
Query: 148 RRLKWKMMENPLTSTPALSRISIGGSSNTSIRRRSLIPQNRVANSRNEECNDDDAERSSL 327
R+ KWKM E T ++S I GSS RR P A RN N + +
Sbjct: 125 RKTKWKMNEYKAVETASVSTIPKSGSSRAFDRR----PTEAYAIERNLPSNGVETSSRAT 180
Query: 328 VAS 336
+++
Sbjct: 181 IST 183
>At3g12160.1 68416.m01516 Ras-related GTP-binding family protein
similar to ras-related GTP-binding protein RGP1
SP:P25766 from [Oryza sativa];contains Pfam profile:
PF00071 Ras family
Length = 222
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 268 RVANSRNEECNDDDAE-RSSLVASDRVVASTPQASPRRG 381
R+ + ++ +DDDA+ SSL+ R++ + Q S +RG
Sbjct: 178 RIISKKSLTADDDDADGNSSLLKGTRIIIPSEQESGKRG 216
>At3g23780.1 68416.m02989 DNA-directed RNA polymerase family protein
similar to SP|P38420 DNA-directed RNA polymerase II 135
kDa polypeptide (EC 2.7.7.6) (RNA polymerase II subunit
2) {Arabidopsis thaliana}; contains Pfam profiles
PF04560: RNA polymerase Rpb2 domain 7, PF04561: RNA
polymerase Rpb2 domain 2, PF04565: RNA polymerase Rpb2
domain 3, PF04566: RNA polymerase Rpb2 domain 4, PF04567:
RNA polymerase Rpb2 domain 5
Length = 946
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/71 (23%), Positives = 27/71 (38%)
Frame = +1
Query: 175 NPLTSTPALSRISIGGSSNTSIRRRSLIPQNRVANSRNEECNDDDAERSSLVASDRVVAS 354
+PLT P R GG + R LI AN D+ + + + A+
Sbjct: 831 HPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYAN 890
Query: 355 TPQASPRRGRE 387
+ +P GR+
Sbjct: 891 VIERTPSSGRK 901
>At3g14190.1 68416.m01793 expressed protein
Length = 193
Score = 27.5 bits (58), Expect = 4.1
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +1
Query: 232 TSIRRRSLIPQNRVANSRNEECNDDDAERSSLVASDRVVASTPQASPRRGRETMSSSPQK 411
+SI+ + L +++++ ++ E +S SD + STP SP R M S+P
Sbjct: 116 SSIKEKHLNWDIEKMDAKDDLTYEEPEEMASPKFSDWLKNSTPWRSPIRHGSMMPSTPLA 175
Query: 412 EHFQGC 429
F C
Sbjct: 176 WRFDSC 181
>At5g46490.2 68418.m05725 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 858
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = -1
Query: 196 QALKLKDFPSFSTSIVLSYIRIFRL*LHKYITKTNIK*NLYSTNTKKKE 50
+ KLK FP FST+I S + +F + +Y + +++ NL + K+E
Sbjct: 770 ECTKLKTFPKFSTNI--SVLNLFGTNIEEYPSHLHLE-NLVEFSISKEE 815
>At4g17440.1 68417.m02610 expressed protein
Length = 215
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +1
Query: 274 ANSRNEECNDDDAERSSLVASDRVVASTPQASPRRGRETMSSSPQKEH 417
ANS++E AE ++ S+RVVAS PR S +P EH
Sbjct: 3 ANSKSERSASQSAE--TVAVSNRVVASRSSRQPR--LSFSSFAPSSEH 46
>At3g22380.1 68416.m02825 expressed protein
Length = 1550
Score = 27.1 bits (57), Expect = 5.5
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +1
Query: 220 GSSNTSIRRRSLIPQNRVANSRNEECNDDDAERSSLVASDRVVASTPQASPRR--GRETM 393
G N+S+ S+IP R +N+ D + + ++L + ++ +S R G
Sbjct: 425 GEGNSSVLD-SIIPLTRESNASL----DSEKKENNLSKDETILPKVESSSGFRSDGEGAK 479
Query: 394 SSSPQKEHFQ 423
SSSP+KE F+
Sbjct: 480 SSSPEKEKFE 489
>At3g18090.1 68416.m02300 DNA-directed RNA polymerase family protein
similar to SP|P38420 DNA-directed RNA polymerase II 135
kDa polypeptide (EC 2.7.7.6) (RNA polymerase II subunit
2) {Arabidopsis thaliana}; contains Pfam profiles
PF04560: RNA polymerase Rpb2 domain 7, PF04561: RNA
polymerase Rpb2 domain 2, PF04565: RNA polymerase Rpb2
domain 3, PF04566: RNA polymerase Rpb2 domain 4, PF04567:
RNA polymerase Rpb2 domain 5
Length = 1038
Score = 27.1 bits (57), Expect = 5.5
Identities = 17/71 (23%), Positives = 27/71 (38%)
Frame = +1
Query: 175 NPLTSTPALSRISIGGSSNTSIRRRSLIPQNRVANSRNEECNDDDAERSSLVASDRVVAS 354
+PLT P R GG + R LI AN D+ + + + A+
Sbjct: 923 HPLTRQPVADRKRFGGIRFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYAN 982
Query: 355 TPQASPRRGRE 387
+ +P GR+
Sbjct: 983 VIERTPSSGRK 993
>At4g17670.1 68417.m02640 senescence-associated protein-related
similar to senescence-associated protein SAG102
(GI:22331931) [Arabidopsis thaliana];
Length = 159
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +1
Query: 286 NEECNDDDAERSSLVASDRVVASTPQASPRRGRETMSSSPQK 411
+EEC ++ ER + ++++ +A R + + SSSP +
Sbjct: 104 SEECREEQIERDEAKEKKQSLSTSVKAMRRNEKRSSSSSPTR 145
>At3g56780.1 68416.m06315 F-box family protein contains F-box domain
Pfam:PF00646
Length = 431
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1
Query: 343 RDLMPQVMTFQHHHHC 296
+D+ P + T HHHHC
Sbjct: 89 KDIGPWIRTALHHHHC 104
>At3g17750.1 68416.m02265 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 1138
Score = 26.6 bits (56), Expect = 7.2
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +1
Query: 229 NTSIRRRSLIPQNRVANSRNEECNDDDAERSSLVASDRVVASTPQASPRRGRETMSSSPQ 408
N S + LI + + S + C+ +ER+ D VAS+ +SP + SS
Sbjct: 691 NESDEPKGLIQSDSMIVSSTKRCSGSSSERNLRDMDDEKVASSRNSSP--SALSHSSDTG 748
Query: 409 KEH 417
+EH
Sbjct: 749 REH 751
>At1g55050.1 68414.m06288 expressed protein ; expression supported
by MPSS
Length = 914
Score = 26.6 bits (56), Expect = 7.2
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +1
Query: 148 RRLKWKMMENPLTSTPALSRISIGGSSNTSIRRRSLIPQNRVA-NSRNEECNDDDAERSS 324
R+ K ++++ P+T + + GG + + IRRR +P+ +S+N+ D
Sbjct: 477 RKQKMEVVDEPMTFLILDTSVDKGGHT-SGIRRRRHLPKEAFGESSQNQSGTSKDVNCEY 535
Query: 325 LVASDRVVASTPQASPRRGR 384
L +D V + ++GR
Sbjct: 536 LKGTDPGVEEETLENVQQGR 555
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 337 DRVVASTPQASPRRGRETMSSSPQ 408
D VAS+P++SP R + SS+P+
Sbjct: 11 DEAVASSPESSPPRMLKAKSSAPE 34
>At5g17910.1 68418.m02100 expressed protein
Length = 1342
Score = 26.2 bits (55), Expect = 9.6
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1
Query: 283 RNEECNDDDAERSSLV--ASDRVVASTPQAS 369
R+EE DDDA+R + SD +S+P AS
Sbjct: 232 RHEEDEDDDADRDDSLDSGSDGAESSSPDAS 262
>At3g44720.1 68416.m04813 prephenate dehydratase family protein
similar to bacterial PheA gene products
Length = 424
Score = 26.2 bits (55), Expect = 9.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 321 ITCGIRSRGCXYPTGISTS 377
+TCG RS +P G+S S
Sbjct: 33 VTCGYRSESFSFPNGVSVS 51
>At2g27690.1 68415.m03355 cytochrome P450, putative similar to
Cytochrome P450 94A1 (P450-dependent fatty acid
omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains
Pfam profile: PF00067 cytochrome P450; supported by
cDNA: gi_13877668
Length = 495
Score = 26.2 bits (55), Expect = 9.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 51 SFFFVLVEYKFHFMFVFVIYLCN 119
SFFF+++ FH +F+ + CN
Sbjct: 11 SFFFIIIFSLFHLLFLQKLRYCN 33
>At1g61060.1 68414.m06874 F-box family protein contains Pfam profile
PF00646: F-box domain
Length = 267
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 377 VEGRLCLHHHRKNISKV 427
V G LCL H RKN S+V
Sbjct: 118 VGGLLCLEHDRKNYSRV 134
>At1g30930.1 68414.m03786 F-box family protein contains F-box domain
Pfam:PF00646
Length = 376
Score = 26.2 bits (55), Expect = 9.6
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 106 YTCVIIIEKYEYNSR--RLKWKMMENPLTSTPALSRISIGG 222
YT ++ Y R LKW+ ++ P T P +RI I G
Sbjct: 168 YTASKDVDHYILTLRTGELKWRTIQCPFTHEPLWTRICING 208
>At1g02700.1 68414.m00221 expressed protein similar to hypothetical
protein GB:CAB80707 GI:7268598 from [Arabidopsis
thaliana]
Length = 247
Score = 26.2 bits (55), Expect = 9.6
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 304 DDAERSSLVASDRVVASTPQASPRRGRETMSSSPQKEHFQ 423
DD R SL V +P+A+ + T P + HFQ
Sbjct: 75 DDTPRPSLEEQPLVPPKSPRATAHKLESTPVGHPSEPHFQ 114
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.127 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,778,899
Number of Sequences: 28952
Number of extensions: 156748
Number of successful extensions: 593
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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