Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10g17
(606 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 93 1e-19
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 93 2e-19
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 88 5e-18
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 30 1.4
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea... 29 3.2
At2g27270.1 68415.m03277 expressed protein 28 4.2
At3g16520.3 68416.m02110 UDP-glucoronosyl/UDP-glucosyl transfera... 28 5.5
At3g16520.2 68416.m02109 UDP-glucoronosyl/UDP-glucosyl transfera... 28 5.5
At3g16520.1 68416.m02108 UDP-glucoronosyl/UDP-glucosyl transfera... 28 5.5
At3g23440.1 68416.m02954 expressed protein ; expression supporte... 27 7.3
At5g32169.1 68418.m03692 hypothetical protein 27 9.6
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 93.1 bits (221), Expect = 1e-19
Identities = 59/164 (35%), Positives = 86/164 (52%)
Frame = +1
Query: 91 STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGT 270
+ K RN DL GV ++S+S+M+HK+ + + V
Sbjct: 7 TAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV------------ 54
Query: 271 RTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 450
P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV +
Sbjct: 55 -DAPVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLK 111
Query: 451 ILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPK 582
L SGLLLVTGPF N PLRR+ Q YVIGTST++ + L K
Sbjct: 112 QLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK 155
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 92.7 bits (220), Expect = 2e-19
Identities = 59/162 (36%), Positives = 85/162 (52%)
Frame = +1
Query: 97 KKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRT 276
K RN DL GV ++S+S+M+HK+ + + V
Sbjct: 9 KVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV-------------D 55
Query: 277 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 456
P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + L
Sbjct: 56 APVEKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQL 113
Query: 457 PSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPK 582
SGLLLVTGPF N PLRR+ Q YVIGTST++ + L K
Sbjct: 114 ASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK 155
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 87.8 bits (208), Expect = 5e-18
Identities = 58/162 (35%), Positives = 82/162 (50%)
Frame = +1
Query: 97 KKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRT 276
K RN DL GV ++S+S+M+HK+ + V
Sbjct: 9 KVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKV-------------D 55
Query: 277 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 456
P+++ FYP ++ ++ R K + ++ ++ GTV I+LAGR GKRVV + L
Sbjct: 56 APVEKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQL 113
Query: 457 PSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPK 582
SGLLLVTGPF N PLRR+ Q YVIGTST+I + K
Sbjct: 114 SSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEK 155
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 280 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 369
P++RR+S P +E++ S GGR S H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555
>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Rbap46 polypeptide (GI:9454362) [Gallus
gallus]
Length = 351
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 246 WR*EEWGNQNSTPQT*EV--LLPHSGENPCLIWWPS 347
W+ E Q ++PQ V L H G+ C++WWPS
Sbjct: 96 WQIPELYGQLNSPQLERVASLDAHVGKINCVLWWPS 131
>At2g27270.1 68415.m03277 expressed protein
Length = 231
Score = 28.3 bits (60), Expect = 4.2
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +1
Query: 307 PTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGP 486
PT++K A G SKH R + + + C+ GK ++ G+ + +LL+
Sbjct: 21 PTKKKTEAKEEGAAASKHSRVVYSD---KSRCL----SKNGKTIIYFGVPAALILLIICV 73
Query: 487 FAFNSCPLR-RIPQ 525
FAFN ++ R+P+
Sbjct: 74 FAFNYIAIQPRVPR 87
>At3g16520.3 68416.m02110 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 462
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 432 EGCTCWNSAQRSAFSYWTFCIQFVPA-TPYSSALCDRHLHQNFTRQLQTAKNTSM 593
E + S+ S+F TF +PA TPYSS+ RH H++ ++ N S+
Sbjct: 48 ESTATYISSVSSSFPSITF--HHLPAVTPYSSSSTSRHHHESLLLEILCFSNPSV 100
>At3g16520.2 68416.m02109 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 446
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 432 EGCTCWNSAQRSAFSYWTFCIQFVPA-TPYSSALCDRHLHQNFTRQLQTAKNTSM 593
E + S+ S+F TF +PA TPYSS+ RH H++ ++ N S+
Sbjct: 48 ESTATYISSVSSSFPSITF--HHLPAVTPYSSSSTSRHHHESLLLEILCFSNPSV 100
>At3g16520.1 68416.m02108 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 451
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 432 EGCTCWNSAQRSAFSYWTFCIQFVPA-TPYSSALCDRHLHQNFTRQLQTAKNTSM 593
E + S+ S+F TF +PA TPYSS+ RH H++ ++ N S+
Sbjct: 48 ESTATYISSVSSSFPSITF--HHLPAVTPYSSSSTSRHHHESLLLEILCFSNPSV 100
>At3g23440.1 68416.m02954 expressed protein ; expression supported
by MPSS
Length = 108
Score = 27.5 bits (58), Expect = 7.3
Identities = 9/42 (21%), Positives = 20/42 (47%)
Frame = -1
Query: 141 ETHHSVAQIIVPGFFRRFFLSHRTCRCGSRLGRRFRLCWSHI 16
+T + + P + +++H CG+ LGR+ W+ +
Sbjct: 17 DTESDLREAATPNWLLAGYMAHEYLTCGTMLGRKLYSGWAEV 58
>At5g32169.1 68418.m03692 hypothetical protein
Length = 258
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 138 THHSVAQIIVPGFFRRFFLSHRTCRCGSRLGRRFRL 31
+HHS A + FR FF+ H T +R RR +L
Sbjct: 115 SHHSTAYSMTS--FRAFFIPHSTRHSSTRKKRRLQL 148
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,554,124
Number of Sequences: 28952
Number of extensions: 285179
Number of successful extensions: 681
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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