Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10g15
         (438 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51991| Best HMM Match : UPF0185 (HMM E-Value=3.3e-14)               77   8e-15
SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_53293| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_38058| Best HMM Match : TP2 (HMM E-Value=0.072)                     27   6.8  
SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_8759| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  
SB_41686| Best HMM Match : PSP94 (HMM E-Value=4.6)                     27   8.9  

>SB_51991| Best HMM Match : UPF0185 (HMM E-Value=3.3e-14)
          Length = 334

 Score = 76.6 bits (180), Expect = 8e-15
 Identities = 38/47 (80%), Positives = 41/47 (87%)
 Frame = +1

Query: 40  FLICV*FKMSKVTFKITLTSDPKLPFKVLSVPEATPFTAVLKFAAEE 180
           FL+   F  SKVTFKITLTSDPKLP+KVLSVPE TPFTAVL+FAAEE
Sbjct: 10  FLLPDFFYRSKVTFKITLTSDPKLPYKVLSVPENTPFTAVLRFAAEE 56


>SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = -1

Query: 270 LQEYITGCLLRIYADTVISDNSTGGRVHPEFFSCKLQHCSEWSRFRHAKYFKRQ 109
           L++ +  CL++IY  T    + +   +H E     L+    W R RH+ +  ++
Sbjct: 786 LEKQVFDCLIKIYGGTA---SFSALLLHTELLPPPLESTENWLRRRHSSFLLKE 836


>SB_53293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 413

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = -2

Query: 263 NTLPAVC*GFMPIPSSVIIALVAGSTLNSSAANFNTAVNGVASGTLSTLNGSFGS 99
           +TL   C   +  PS + +  + G  L++S+  F+ A   V+S     LNG+FGS
Sbjct: 71  HTLQKAC--TIKFPSDMKMLAMLGGELSNSSRYFS-AFGNVSSHDCGDLNGTFGS 122


>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1176

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 20/58 (34%), Positives = 32/58 (55%)
 Frame = +1

Query: 127  SVPEATPFTAVLKFAAEEFRVDPATSAIITDDGIGINPQQTAGNVFLKHGSELRLIPR 300
            S+ +A     VL    E+F V+  TSA+++++  G    ++ GN F K GS  R IP+
Sbjct: 1047 SIKQANNIKNVL--TKEDFLVNE-TSAVLSENFPGSESNKSIGNAFTKKGS-TRDIPK 1100


>SB_38058| Best HMM Match : TP2 (HMM E-Value=0.072)
          Length = 399

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 66  HFKLYTN*KIYVQFRFPIYYKF 1
           ++K+  N K+ V ++FP+ YKF
Sbjct: 61  NYKVSVNYKVSVNYKFPVNYKF 82


>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2988

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 128 LSTLNGSFGSDVSVILKVTFDILNYTQIKKFMFNFVSQ 15
           ++  N S    +   L VTFDI     +K  +FN VSQ
Sbjct: 319 ITPYNDSASDGILTSLNVTFDIKGSFLVKVRVFNLVSQ 356


>SB_8759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1184

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +1

Query: 7    VINWETKLNINFLICV*FKMSKVTFKITLTSDPKLPFKVLSVPEATPFTAVLKFAAEEFR 186
            +INWET+L I     +  +   +  ++   +D +L     S  +A PF A + +A    R
Sbjct: 923  IINWETELRIPHQARLSREAKDLILRLCTNADMRLGSNGASEIKAHPFFACVDWAYLAKR 982

Query: 187  VDPATSAII 213
            V    + +I
Sbjct: 983  VQAPYTPVI 991


>SB_41686| Best HMM Match : PSP94 (HMM E-Value=4.6)
          Length = 210

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -2

Query: 263 NTLPAVC*GFMPIPSSVIIALVAGSTLNSSAANFNTAVNGVASGTLSTLNGSFGS 99
           +TL   C   +  P+ + +  + G  L++S+  F+ A   V+S     LNG+FGS
Sbjct: 47  HTLQKAC--TIKFPNDMKMLAMLGGELSNSSRYFS-AFGNVSSHDCGDLNGTFGS 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,221,283
Number of Sequences: 59808
Number of extensions: 234086
Number of successful extensions: 502
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)