Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10g15
         (438 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77710.1 68414.m09048 expressed protein similar to hypothetic...   151   2e-37
At3g48420.1 68416.m05285 haloacid dehalogenase-like hydrolase fa...    34   0.036
At5g47010.1 68418.m05794 RNA helicase, putative similar to type ...    29   1.4  
At5g48700.1 68418.m06027 ubiquitin-related contains similarity t...    27   5.5  
At5g10560.1 68418.m01222 glycosyl hydrolase family 3 protein bet...    27   5.5  
At2g45000.1 68415.m05603 expressed protein contains Pfam profile...    27   5.5  
At2g27180.1 68415.m03267 expressed protein                             27   7.3  
At2g01950.1 68415.m00130 leucine-rich repeat transmembrane prote...    27   7.3  
At1g23230.1 68414.m02906 expressed protein                             26   9.7  

>At1g77710.1 68414.m09048 expressed protein similar to hypothetical
           protein GB:P34661 [Caenorhabditis elegans]
          Length = 93

 Score =  151 bits (367), Expect = 2e-37
 Identities = 71/81 (87%), Positives = 76/81 (93%)
 Frame = +1

Query: 70  KVTFKITLTSDPKLPFKVLSVPEATPFTAVLKFAAEEFRVDPATSAIITDDGIGINPQQT 249
           KV+FK+TLTSDPKLPFKV SVPE  PFTAVLKFAAEEF+V P TSAIIT+DGIGINPQQ+
Sbjct: 6   KVSFKVTLTSDPKLPFKVFSVPEGAPFTAVLKFAAEEFKVPPQTSAIITNDGIGINPQQS 65

Query: 250 AGNVFLKHGSELRLIPRDRVG 312
           AGNVFLKHGSELRLIPRDRVG
Sbjct: 66  AGNVFLKHGSELRLIPRDRVG 86


>At3g48420.1 68416.m05285 haloacid dehalogenase-like hydrolase
           family protein low similarity to SP|P95649 CbbY protein
           {Rhodobacter sphaeroides}; contains InterPro accession
           IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 319

 Score = 34.3 bits (75), Expect = 0.036
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 130 VPEATPFTAVLKFAAEEFRVDPATSAIITDDGIGINPQQTAG 255
           VP+  P  A+   AAE   VDP+   ++ D  IG+   + AG
Sbjct: 229 VPKKKPDPAIYNLAAETLGVDPSKCVVVEDSAIGLAAAKAAG 270


>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1
           RNA helicase pNORF1 [Homo sapiens] GI:1885356
          Length = 1254

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +1

Query: 226 IGINPQQTAGNVFLKHGSELRLIPRD--RVGFSLI*VHKYVKSFRYIKK 366
           IG+N ++ A  VF K  +ELRL+P D  R+ +S   VH   +S  ++ K
Sbjct: 354 IGLNKKRVAYFVFPKEENELRLVPGDELRLRYSGDAVHPSWQSVGHVIK 402


>At5g48700.1 68418.m06027 ubiquitin-related contains similarity to
           SP|O13351 Ubiquitin-like protein smt3/pmt3
           {Schizosaccharomyces pombe}
          Length = 117

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 118 KVLSVPEATPFTAVLKFAAEEFRVDPATSAIITDDGIGINPQQTAGNVFLKHGSEL-RLI 294
           KV  V        ++++ A+   ++  T   ++DDG  I    TA ++ LK G ++  L+
Sbjct: 44  KVFRVRRKARLLKLMEYYAKMRGIEWNTFRFLSDDGSRIREYHTADDMELKDGDQIDALL 103

Query: 295 PRD 303
           P++
Sbjct: 104 PQE 106


>At5g10560.1 68418.m01222 glycosyl hydrolase family 3 protein
           beta-xylosidase, Aspergllus nidulans, EMBL:ANXLND
          Length = 792

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = +1

Query: 103 PKLPFKVLSVPEATPFTAVLKFAAEEFRVDPATSAIITDDGIGINPQQTAGNVFLKHGSE 282
           P   ++  + P+   F   L +   E+++  A   +   +   + PQQ++    L+HG E
Sbjct: 624 PGRTYRFYTGPQVYSFGTGLSYTKFEYKILSAPIRLSLSE---LLPQQSSHKKQLQHGEE 680

Query: 283 LRLIPRDRV 309
           LR +  D V
Sbjct: 681 LRYLQLDDV 689


>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
           PF05064 Nsp1-like C-terminal region
          Length = 739

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 233 MPIPSSVIIALVAGSTLNSSAANFNTAVNGVASGTLST 120
           M  PS  + +    +T  SSAA F+T   G+AS T +T
Sbjct: 421 MAFPSFGVTSSATNTTPASSAATFSTTGFGLASSTPAT 458


>At2g27180.1 68415.m03267 expressed protein
          Length = 165

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 316 RSRHGPLGSILILNRASGIHYRLSAEDL 233
           R RHG L S       S +H RL+ EDL
Sbjct: 89  RKRHGLLASATAEGSESTVHARLNEEDL 116


>At2g01950.1 68415.m00130 leucine-rich repeat transmembrane protein
           kinase, putative similar to brassinosteroid insensitive
           protein
          Length = 1143

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 228 DTVISDNSTGGRVHPEFFSC 169
           D ++++N   G + PEFF+C
Sbjct: 451 DLILNNNQLTGEIPPEFFNC 470


>At1g23230.1 68414.m02906 expressed protein
          Length = 1615

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -2

Query: 227  IPSSVIIALVAGSTLNSSAANFNTAVNGVASGTLSTLNGSFGSDVSV 87
            + S V I +   STL  S   F+ A NGV  G++   + S GS  S+
Sbjct: 1307 VSSLVQIIVNIQSTLIQSGNGFHGAANGVGQGSVLPTSPSGGSTDSM 1353


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,591,008
Number of Sequences: 28952
Number of extensions: 164528
Number of successful extensions: 426
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)