Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10g14
(569 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 98 7e-22
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 52 8e-08
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 52 8e-08
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 51 1e-07
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 49 6e-07
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 45 9e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 44 2e-05
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 43 4e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 41 1e-04
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 40 3e-04
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 40 3e-04
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 39 6e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 39 6e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 39 6e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 37 0.002
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 37 0.002
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 36 0.003
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 35 0.007
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 34 0.013
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 34 0.017
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 33 0.039
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 32 0.051
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 32 0.051
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 32 0.051
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 31 0.090
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 31 0.12
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 30 0.21
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.27
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 29 0.36
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 1.1
SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po... 28 1.1
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 27 1.5
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 27 2.6
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 3.4
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 26 4.5
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 7.8
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch... 25 7.8
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 98.3 bits (234), Expect = 7e-22
Identities = 41/84 (48%), Positives = 63/84 (75%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
K+FIGGL++ TTD SL++++EQ+GE++D VM+D T RS+GFGF+T+ V+E +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM-S 222
Query: 389 RPHKIDGRIVEPKRAVPRGRD*KT 460
+ H +DG+I++PKRA+PR KT
Sbjct: 223 KEHHLDGKIIDPKRAIPREEQEKT 246
Score = 72.1 bits (169), Expect = 5e-14
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +2
Query: 188 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 367
EE E T K+F+GG+ T+ + F+ Q+G ++D +M D T R +GFGF+TY
Sbjct: 241 EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESA 300
Query: 368 VDEAQNNRPH-KIDGRIVEPKRAVPR 442
V EA ++P+ I G+ VE KRA P+
Sbjct: 301 V-EATMSQPYITIHGKPVEVKRATPK 325
Score = 31.1 bits (67), Expect = 0.12
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
K+F+ GL + ++ LR+YF FG ++
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVL 190
Score = 31.1 bits (67), Expect = 0.12
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
K+FV G+ D EE+ R +F+ FG ++
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVL 274
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 51.6 bits (118), Expect = 8e-08
Identities = 27/89 (30%), Positives = 42/89 (47%)
Frame = +2
Query: 176 GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 355
GD EP T +F+G L + T+ L + G+I + + DP++ R KGFG++T+S
Sbjct: 358 GDQLSEPSDT--VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFS 415
Query: 356 QAHMVDEAQNNRPHKIDGRIVEPKRAVPR 442
+ H I GR + PR
Sbjct: 416 DIDSAKKCVEMNGHFIAGRPCRLDFSTPR 444
Score = 50.0 bits (114), Expect = 2e-07
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Frame = +2
Query: 161 KPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFG 340
+P++ ++ T +F+G L + D L + +E++G IV V+ D ++ RSKG+G
Sbjct: 248 RPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYG 307
Query: 341 FITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPR 442
++ + A N +IDGR+V + PR
Sbjct: 308 YVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPR 342
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 51.6 bits (118), Expect = 8e-08
Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN- 388
LF+ G+ R + L++ + ++G + V +M++P TK S+GFGF+++S A +N
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 389 RPHKIDGRIVEPKRA 433
+ GR++ ++A
Sbjct: 163 NSQEFYGRVLNVQKA 177
Score = 29.1 bits (62), Expect = 0.48
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +1
Query: 487 LFVAGLKQDIEEEDLREYFSTFGNI 561
LFV+G+ ++E++L++ FS FG +
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTV 127
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 50.8 bits (116), Expect = 1e-07
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN- 388
LF+ L ++T L F+ G I VV+ +P+T ++G+GF+T+S A
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 389 RPHKIDGRIVEPKRAVPRGR 448
+ K+ GRI+ A PR R
Sbjct: 67 KNKKLHGRILRLDFATPRKR 86
Score = 36.3 bits (80), Expect = 0.003
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 352
+F+ L + T+ L + Q+G + ++KDP T RS G GFI +
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF 325
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 48.8 bits (111), Expect = 6e-07
Identities = 22/47 (46%), Positives = 31/47 (65%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 352
LF+G LD+ TTD+ LKE + Q G+I V +M T + KGFGF+ +
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 44.8 bits (101), Expect = 9e-06
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +2
Query: 194 PEHTRK-LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 370
P+ T++ +F+G L + + L ++ G I V +++DPKT KGF +I + V
Sbjct: 265 PQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGV 324
Query: 371 DEAQNNRPHKI-DGRIVEPKRA 433
D+A K+ +GR + RA
Sbjct: 325 DKALLLNEKKMPEGRTLRIMRA 346
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Frame = +2
Query: 161 KPSESG--DDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 334
KP S DY + + ++IG LD+ + + + ++GE VD+ +++D +T +SKG
Sbjct: 17 KPFSSSWHQDYSDSAY---IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKG 73
Query: 335 FGFITYSQAHMVDEAQNNRPH-KIDGRIV 418
F F+ Y A +N + K+ R+V
Sbjct: 74 FAFLKYEDQRSTVLAVDNMTNVKLLDRLV 102
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 42.7 bits (96), Expect = 4e-05
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +2
Query: 161 KPSESGDDYEEPEHTRK-LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 337
+P E E E R+ +F+ L R T L +F+EQ G + D +++D + RSKG
Sbjct: 224 RPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGV 283
Query: 338 GFITYSQAHMVDEA 379
++ + V A
Sbjct: 284 AYVEFCHEDSVQAA 297
Score = 38.7 bits (86), Expect = 6e-04
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +2
Query: 188 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 352
E P H +L + + + TD +K +E +G+I V + +D + RSKGFG+I Y
Sbjct: 336 EIPFH--RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQY 387
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 40.7 bits (91), Expect = 1e-04
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +2
Query: 170 ESGDDY--EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 343
ESGD E + + L + L T + L++ + ++G I V + KD +T R+KGF F
Sbjct: 188 ESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAF 247
Query: 344 ITY 352
++Y
Sbjct: 248 VSY 250
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 487 LFVAGLKQDIEEEDLREYFSTFGNI 561
L V L D EE+LR+ F FG I
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGI 228
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 39.9 bits (89), Expect = 3e-04
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +2
Query: 188 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 367
+E + +++G +DY T L+ + G + V ++ D T KGF +I +S+ +
Sbjct: 49 KESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSL 108
Query: 368 VDEA 379
V A
Sbjct: 109 VPNA 112
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 39.5 bits (88), Expect = 3e-04
Identities = 22/75 (29%), Positives = 39/75 (52%)
Frame = +2
Query: 218 IGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPH 397
+G L + T++ L +F+ + + +V+ DP T+RS+GFG++ + A + A
Sbjct: 98 VGNLSFDLTENDLGDFFGEGVTSIRLVI--DPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 398 KIDGRIVEPKRAVPR 442
+ GR V A PR
Sbjct: 156 DLMGRPVRITVAEPR 170
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 38.7 bits (86), Expect = 6e-04
Identities = 18/86 (20%), Positives = 44/86 (51%)
Frame = +2
Query: 206 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 385
R+L++ +D++ + ++ F+ +G++ V + K + + KGFG++ + + A +
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRIPK--RFNQHKGFGYVVMTTNQDAENALS 814
Query: 386 NRPHKIDGRIVEPKRAVPRGRD*KTR 463
++ R++ + PR KTR
Sbjct: 815 AAGKQLGNRVLNVVLSKPRESLEKTR 840
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 38.7 bits (86), Expect = 6e-04
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 379
++I LD T+ + + Q+GEI + ++KD K +GFGF+ Y+ +A
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDK-PRGFGFVNYANHECAQKA 317
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 379
LFI L D LK + +G I +M D + K SKGFGF+ Y+ ++A
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGK-SKGFGFVCYTTPEEANKA 420
Score = 36.7 bits (81), Expect = 0.002
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 352
L++G LD T++ L E + G + + V +D T+RS G+ ++ +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNF 128
Score = 29.1 bits (62), Expect = 0.48
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 487 LFVAGLKQDIEEEDLREYFSTFGNIVS 567
LF+ L+ ++++E L+ FS FG I S
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITS 392
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 38.7 bits (86), Expect = 6e-04
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +2
Query: 188 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 367
E+ +++G LD + TDS L E Q G +V++ + +D GFGF +
Sbjct: 5 EDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQD 64
Query: 368 VDEA-QNNRPHKIDGRIVEPKRA 433
V+ A Q K+ G+ + RA
Sbjct: 65 VEYACQILNQVKLFGKPIRVNRA 87
Score = 38.3 bits (85), Expect = 8e-04
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD---EAQ 382
LF+G LD + L + + G++V + + RSKG+GF++Y D EA
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 383 NNR 391
NN+
Sbjct: 161 NNQ 163
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 37.1 bits (82), Expect = 0.002
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +2
Query: 173 SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 352
+G Y + E R++++G L Y+ LKEF Q G +++ ++ P SKG I Y
Sbjct: 57 NGQKYTQQE--RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLP-NGLSKGCAIIEY 113
Query: 353 SQAHMVDEA-QNNRPHKIDGRIV 418
S A A + K GR+V
Sbjct: 114 STAEEARTAIKTLSNQKFMGRLV 136
Score = 35.1 bits (77), Expect = 0.007
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 352
+++G L + T+D +L + + G ++ + +P T RSKGFG + +
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQF 327
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 36.7 bits (81), Expect = 0.002
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 352
+F+G + Y ++ + E + Q G + ++ DP+T KG+GF +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 36.3 bits (80), Expect = 0.003
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +2
Query: 158 MKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 337
M + E TR ++I GL T+D +L + ++G++ + D +T KG+
Sbjct: 280 MSHDNKKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGY 339
Query: 338 GFITYSQ 358
GF + +
Sbjct: 340 GFACFEE 346
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 35.1 bits (77), Expect = 0.007
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +2
Query: 212 LFIGGLDYRTTDSS--LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 385
LF+ LD ++ L+E + ++G I + P T+ SKG+GF+++S +A N
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 34.3 bits (75), Expect = 0.013
Identities = 13/59 (22%), Positives = 29/59 (49%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
+++G + Y + + + ++Q G + ++ DP++ + KG+GF Y A N
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRN 65
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 33.9 bits (74), Expect = 0.017
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNN 388
+++G L + TT+ + + + GEI +++ D TK GF F+ Y +D +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 389 RPHKIDGRIV 418
+D RI+
Sbjct: 94 SRTSLDERII 103
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 32.7 bits (71), Expect = 0.039
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
+LF+G + + T + +F++ +G+I+D +M GFGF+ A + N+
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVEDARDARDIVND 56
Query: 389 RPHK--IDGRI-VEPKRAVPRGRD 451
K + RI VEP R R R+
Sbjct: 57 FQGKEFMGSRIVVEPARGERRRRE 80
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 32.3 bits (70), Expect = 0.051
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +2
Query: 194 PEHTRKLFIGGLDYR--TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 367
P L++ LD T S L++ + +G I+ ++ P + SKG+GF+ + Q
Sbjct: 378 PIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEA 437
Query: 368 VDEAQNNRPHKIDGRIVEPKR 430
A++ ++G +V KR
Sbjct: 438 AVRAKDT----LNGMMVGKKR 454
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 32.3 bits (70), Expect = 0.051
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSL----KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 379
LF+ L+ ++ L K++++QWG ++ V V+KD + + F+ + +A
Sbjct: 81 LFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKD---WLQRPYSFVQFQNTDDASKA 137
Query: 380 QNNRPHKI-DGRIVEPKRA 433
+ + I DGR + +RA
Sbjct: 138 LSEAQNTILDGRHIRIERA 156
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 32.3 bits (70), Expect = 0.051
Identities = 17/75 (22%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ---AHMVDEAQ 382
L++G L + + ++ ++ Q+G ++ + + ++ KT SK + FI + A++V E
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 383 NNRPHKIDGRIVEPK 427
+N + + G++++ K
Sbjct: 167 HN--YLLYGKLLQCK 179
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 31.5 bits (68), Expect = 0.090
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 466 LVPPLKKLFVAGLKQDIEEEDLREYFSTFGNIVS 567
+ PP LFV L ++EDL FS FG I+S
Sbjct: 239 VAPPENVLFVCKLNPVTQDEDLELIFSRFGKIIS 272
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 31.1 bits (67), Expect = 0.12
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 385
+F+GGL ++ L+ ++ +G I+++ K KG GF+ YS+ ++A N
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNI------KIPFGKGCGFVQYSEKSAAEKAIN 350
Score = 30.7 bits (66), Expect = 0.16
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 427 TSSSKGKRLKDQKLVPPLKK-LFVAGLKQDIEEEDLREYFSTFGNIVS 567
TS+S + +D + PL +FV GL ++ E+DL+ F FG I++
Sbjct: 278 TSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILN 325
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 30.3 bits (65), Expect = 0.21
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 385
+F+GGL ++ LK ++ +GEIV V K KG GF+ + + A N
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYV------KIPPGKGCGFVQFVNRQSAEIAIN 356
Score = 29.9 bits (64), Expect = 0.27
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
+F+G L + + F ++ +M DP+T S+G+GF+ ++ + A
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAE 247
Query: 389 RPHKIDG-RIVEPKRAVPRGR 448
+I G R + A P+ +
Sbjct: 248 MQGQICGDRPIRVGLATPKSK 268
Score = 29.5 bits (63), Expect = 0.36
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 487 LFVAGLKQDIEEEDLREYFSTFGNIV 564
+FV GL + + EE+L+ F FG IV
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIV 330
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 29.9 bits (64), Expect = 0.27
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 352
LF+G L ++ +L+ +++ G++ V + D + R KG+ F+ +
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 29.5 bits (63), Expect = 0.36
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +1
Query: 424 KTSSSKGKRLKDQKLVPPLKKLFVAGLKQDIEEEDLREYFSTFGNI 561
K ++ ++ ++ +L+ K+LF+ L E+DL+ F FG +
Sbjct: 304 KAENNVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQL 349
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 203 TRKLFIGGLDYRTTDSSLKEFYEQWGEI 286
+R ++IG D T LKE +E++GEI
Sbjct: 413 SRNIYIGNADDSLTIERLKEDFEEFGEI 440
>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 27.9 bits (59), Expect = 1.1
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -2
Query: 484 FLTVALASGLLISSPWNCSFWLDNSSVNFVRPIILSFINHMGLR-ICNKSKSF 329
FLT A+A GL+IS+P + + S++ PI+ IN + L IC S SF
Sbjct: 231 FLTEAVADGLIISTPTGSTAY----SLSSGGPIVHPSINALLLTPICPNSLSF 279
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 27.5 bits (58), Expect = 1.5
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 12/75 (16%)
Frame = +2
Query: 173 SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEI-VDVVVMKDP-----------K 316
SG + +P +++ GL T+ LKE ++ + + V P +
Sbjct: 194 SGKNKAKPLPPNSIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGE 253
Query: 317 TKRSKGFGFITYSQA 361
+R +GFGF++++ A
Sbjct: 254 QRRGRGFGFVSFANA 268
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 26.6 bits (56), Expect = 2.6
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = -2
Query: 556 FQMY*NTLSSLLLQCLASVQLQTTFLTVALASGLLISSPWNCSFWLDNSSVNFVRPIILS 377
F M+ +SS LL L ++ +F +LASG +I+ N S W+ + V ++ S
Sbjct: 239 FTMFTAIISSTLLYLLVAITGYLSF--GSLASGNIIAMYDNTSIWIIGGKLAIVVLVLFS 296
Query: 376 F 374
+
Sbjct: 297 Y 297
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 3.4
Identities = 8/34 (23%), Positives = 21/34 (61%)
Frame = +2
Query: 200 HTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVV 301
++R LF+GG+ + L+ +E++G + +++
Sbjct: 404 YSRTLFLGGITRSVREPVLRSMFERFGSVQSLIL 437
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 164 PSESGDDYEEPEHTRKLFI 220
PS G YEEPEHTR +I
Sbjct: 76 PSADGG-YEEPEHTRLSYI 93
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 7.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 472 PPLKKLFVAGLKQDIEEEDLREYFST 549
PP ++V L EE+L+ FST
Sbjct: 423 PPCNTIYVGNLPPSTSEEELKVLFST 448
>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 445
Score = 25.0 bits (52), Expect = 7.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 170 ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKE 262
+ GD + R LF YRT DSS+K+
Sbjct: 353 QQGDSFPSLPEIRALFKDCKFYRTIDSSIKD 383
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,253,440
Number of Sequences: 5004
Number of extensions: 44073
Number of successful extensions: 194
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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