Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10g14
(569 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 87 8e-18
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 87 8e-18
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 84 7e-17
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 84 7e-17
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 84 7e-17
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 84 7e-17
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 83 1e-16
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 83 1e-16
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 83 1e-16
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 80 9e-16
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 79 2e-15
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 77 8e-15
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 72 3e-13
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 71 5e-13
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 71 5e-13
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 71 5e-13
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 68 4e-12
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 64 6e-11
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 63 1e-10
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 63 1e-10
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 63 1e-10
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 63 1e-10
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 63 1e-10
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 63 1e-10
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 63 1e-10
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 62 2e-10
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 62 2e-10
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 62 2e-10
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 62 2e-10
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 62 3e-10
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 62 3e-10
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 62 3e-10
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 62 3e-10
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 62 3e-10
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 62 3e-10
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 62 3e-10
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 61 4e-10
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 61 6e-10
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 61 6e-10
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 61 6e-10
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 61 6e-10
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 60 8e-10
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 60 1e-09
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 60 1e-09
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 60 1e-09
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 59 2e-09
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 58 3e-09
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 58 4e-09
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 57 7e-09
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 57 7e-09
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 56 2e-08
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 56 2e-08
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 55 3e-08
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 55 4e-08
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 55 4e-08
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 54 5e-08
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 54 5e-08
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 54 5e-08
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 54 9e-08
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 54 9e-08
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 53 2e-07
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 53 2e-07
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 52 2e-07
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 52 2e-07
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 52 2e-07
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 52 3e-07
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 52 4e-07
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 52 4e-07
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 52 4e-07
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 51 5e-07
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 51 5e-07
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 51 6e-07
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 51 6e-07
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 51 6e-07
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 51 6e-07
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 50 8e-07
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 50 1e-06
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 50 1e-06
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 49 2e-06
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 48 3e-06
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 48 3e-06
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 48 3e-06
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 48 6e-06
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 48 6e-06
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 48 6e-06
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 48 6e-06
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 47 8e-06
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 47 8e-06
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 47 8e-06
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 47 8e-06
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 47 8e-06
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 47 1e-05
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 47 1e-05
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 46 1e-05
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 46 1e-05
At5g51300.2 68418.m06360 splicing factor-related contains simila... 46 2e-05
At5g51300.1 68418.m06359 splicing factor-related contains simila... 46 2e-05
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 46 2e-05
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 45 3e-05
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 45 4e-05
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 45 4e-05
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 45 4e-05
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 44 5e-05
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 44 5e-05
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 44 5e-05
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 44 7e-05
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 44 9e-05
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 44 9e-05
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 43 1e-04
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 43 1e-04
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 43 2e-04
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 43 2e-04
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 43 2e-04
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 43 2e-04
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 43 2e-04
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 42 2e-04
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 42 3e-04
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 42 3e-04
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 42 4e-04
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 41 5e-04
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 41 7e-04
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 41 7e-04
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 41 7e-04
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 41 7e-04
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 40 9e-04
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 40 9e-04
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 40 0.001
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 40 0.001
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 40 0.002
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 39 0.002
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 39 0.002
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 39 0.003
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 39 0.003
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 39 0.003
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 39 0.003
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 38 0.004
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 38 0.005
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 38 0.005
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 38 0.006
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 38 0.006
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 37 0.008
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 37 0.008
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 37 0.008
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 37 0.008
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 37 0.008
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 37 0.008
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 37 0.011
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 36 0.014
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 36 0.014
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 36 0.014
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 36 0.019
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 36 0.019
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 36 0.025
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 36 0.025
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 35 0.033
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 35 0.033
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 35 0.033
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 35 0.033
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 35 0.033
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 35 0.044
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 34 0.058
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 34 0.058
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 34 0.058
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 34 0.077
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 34 0.077
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 33 0.10
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 33 0.10
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 33 0.13
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 33 0.13
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 32 0.23
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 32 0.23
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 31 0.41
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 31 0.41
At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containi... 31 0.54
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 31 0.54
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 31 0.72
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 30 0.95
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 30 0.95
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 30 0.95
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 30 1.2
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 29 1.7
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 29 1.7
At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (... 29 1.7
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 29 1.7
At1g12700.1 68414.m01473 helicase domain-containing protein / pe... 29 1.7
At5g13655.1 68418.m01588 hypothetical protein 29 2.2
At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing ... 29 2.2
At1g41855.1 68414.m04833 hypothetical protein 29 2.2
At1g18090.2 68414.m02241 exonuclease, putative similar to Swiss-... 29 2.2
At1g18090.1 68414.m02240 exonuclease, putative similar to Swiss-... 29 2.2
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 29 2.9
At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing ... 28 5.0
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 28 5.0
At2g47310.1 68415.m05906 flowering time control protein-related ... 28 5.0
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 28 5.0
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 28 5.0
At3g53290.1 68416.m05876 cytochrome P450, putative Similar to Cy... 27 6.7
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ... 27 6.7
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 27 6.7
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 27 6.7
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 27 6.7
At4g10610.1 68417.m01735 RNA-binding protein, putative 27 8.8
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 27 8.8
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 87.0 bits (206), Expect = 8e-18
Identities = 39/83 (46%), Positives = 55/83 (66%)
Frame = +2
Query: 194 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 373
P TRK+F+GGL T+S K ++EQ+G DVVVM D T+R +GFGFITY V+
Sbjct: 104 PGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVE 163
Query: 374 EAQNNRPHKIDGRIVEPKRAVPR 442
+ H+++G++VE KRAVP+
Sbjct: 164 KVLLKTFHELNGKMVEVKRAVPK 186
Score = 81.0 bits (191), Expect = 5e-16
Identities = 35/78 (44%), Positives = 53/78 (67%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
KLFIGG+ + T + LKE++ +GE+++ V++KD T R++GFGF+ ++ V E
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVIT 65
Query: 389 RPHKIDGRIVEPKRAVPR 442
H IDGR+VE K+AVPR
Sbjct: 66 EKHNIDGRLVEAKKAVPR 83
Score = 37.9 bits (84), Expect = 0.005
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
KLF+ G+ D EE L+EYFS+FG ++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVI 33
Score = 30.7 bits (66), Expect = 0.72
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 481 KKLFVAGLKQDIEEEDLREYFSTFG 555
+K+FV GL + E D + YF FG
Sbjct: 108 RKIFVGGLPSSVTESDFKTYFEQFG 132
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 87.0 bits (206), Expect = 8e-18
Identities = 39/83 (46%), Positives = 55/83 (66%)
Frame = +2
Query: 194 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 373
P TRK+F+GGL T+S K ++EQ+G DVVVM D T+R +GFGFITY V+
Sbjct: 104 PGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVE 163
Query: 374 EAQNNRPHKIDGRIVEPKRAVPR 442
+ H+++G++VE KRAVP+
Sbjct: 164 KVLLKTFHELNGKMVEVKRAVPK 186
Score = 81.0 bits (191), Expect = 5e-16
Identities = 35/78 (44%), Positives = 53/78 (67%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
KLFIGG+ + T + LKE++ +GE+++ V++KD T R++GFGF+ ++ V E
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVIT 65
Query: 389 RPHKIDGRIVEPKRAVPR 442
H IDGR+VE K+AVPR
Sbjct: 66 EKHNIDGRLVEAKKAVPR 83
Score = 37.9 bits (84), Expect = 0.005
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
KLF+ G+ D EE L+EYFS+FG ++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVI 33
Score = 30.7 bits (66), Expect = 0.72
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 481 KKLFVAGLKQDIEEEDLREYFSTFG 555
+K+FV GL + E D + YF FG
Sbjct: 108 RKIFVGGLPSSVTESDFKTYFEQFG 132
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 83.8 bits (198), Expect = 7e-17
Identities = 36/80 (45%), Positives = 54/80 (67%)
Frame = +2
Query: 203 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 382
T+K+F+GGL T+ K +++Q+G I DVVVM D T+R +GFGFIT+ VD
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Query: 383 NNRPHKIDGRIVEPKRAVPR 442
+ H+++G++VE KRAVP+
Sbjct: 169 HKTFHELNGKLVEVKRAVPK 188
Score = 74.9 bits (176), Expect = 3e-14
Identities = 34/78 (43%), Positives = 52/78 (66%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
KLFIGG+ + T + L++++ +G++V+ V+M+D T R++GFGFI ++ V E
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIM 65
Query: 389 RPHKIDGRIVEPKRAVPR 442
H IDGR VE K+AVPR
Sbjct: 66 DKHIIDGRTVEAKKAVPR 83
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = +1
Query: 478 LKKLFVAGLKQDIEEEDLREYFSTFGNIV 564
L KLF+ G+ D +EE LR+YFS +G++V
Sbjct: 5 LGKLFIGGISWDTDEERLRDYFSNYGDVV 33
Score = 34.7 bits (76), Expect = 0.044
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 481 KKLFVAGLKQDIEEEDLREYFSTFGNI 561
KK+FV GL I EE+ + YF FG I
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTI 136
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 83.8 bits (198), Expect = 7e-17
Identities = 36/80 (45%), Positives = 54/80 (67%)
Frame = +2
Query: 203 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 382
T+K+F+GGL T+ K +++Q+G I DVVVM D T+R +GFGFIT+ VD
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Query: 383 NNRPHKIDGRIVEPKRAVPR 442
+ H+++G++VE KRAVP+
Sbjct: 169 HKTFHELNGKLVEVKRAVPK 188
Score = 74.9 bits (176), Expect = 3e-14
Identities = 34/78 (43%), Positives = 52/78 (66%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
KLFIGG+ + T + L++++ +G++V+ V+M+D T R++GFGFI ++ V E
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIM 65
Query: 389 RPHKIDGRIVEPKRAVPR 442
H IDGR VE K+AVPR
Sbjct: 66 DKHIIDGRTVEAKKAVPR 83
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = +1
Query: 478 LKKLFVAGLKQDIEEEDLREYFSTFGNIV 564
L KLF+ G+ D +EE LR+YFS +G++V
Sbjct: 5 LGKLFIGGISWDTDEERLRDYFSNYGDVV 33
Score = 34.7 bits (76), Expect = 0.044
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 481 KKLFVAGLKQDIEEEDLREYFSTFGNI 561
KK+FV GL I EE+ + YF FG I
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTI 136
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 83.8 bits (198), Expect = 7e-17
Identities = 36/80 (45%), Positives = 54/80 (67%)
Frame = +2
Query: 203 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 382
T+K+F+GGL T+ K +++Q+G I DVVVM D T+R +GFGFIT+ VD
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Query: 383 NNRPHKIDGRIVEPKRAVPR 442
+ H+++G++VE KRAVP+
Sbjct: 169 HKTFHELNGKLVEVKRAVPK 188
Score = 74.9 bits (176), Expect = 3e-14
Identities = 34/78 (43%), Positives = 52/78 (66%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
KLFIGG+ + T + L++++ +G++V+ V+M+D T R++GFGFI ++ V E
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIM 65
Query: 389 RPHKIDGRIVEPKRAVPR 442
H IDGR VE K+AVPR
Sbjct: 66 DKHIIDGRTVEAKKAVPR 83
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = +1
Query: 478 LKKLFVAGLKQDIEEEDLREYFSTFGNIV 564
L KLF+ G+ D +EE LR+YFS +G++V
Sbjct: 5 LGKLFIGGISWDTDEERLRDYFSNYGDVV 33
Score = 34.7 bits (76), Expect = 0.044
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 481 KKLFVAGLKQDIEEEDLREYFSTFGNI 561
KK+FV GL I EE+ + YF FG I
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTI 136
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 83.8 bits (198), Expect = 7e-17
Identities = 36/80 (45%), Positives = 55/80 (68%)
Frame = +2
Query: 203 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 382
T+K+F+GGL T++ K +++Q+G I DVVVM D T+R +GFGFIT+ VD
Sbjct: 121 TKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVL 180
Query: 383 NNRPHKIDGRIVEPKRAVPR 442
+ H+++G++VE KRAVP+
Sbjct: 181 HKTFHELNGKMVEVKRAVPK 200
Score = 77.0 bits (181), Expect = 8e-15
Identities = 37/95 (38%), Positives = 59/95 (62%)
Frame = +2
Query: 158 MKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 337
M P E E KLFIGG+ + T + L+E++ ++G++V+ V+M+D T R++GF
Sbjct: 1 MNPEEQ--KMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGF 58
Query: 338 GFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPR 442
GFI ++ + + ++ H IDGR VE K+AVPR
Sbjct: 59 GFIVFADPSVAERVIMDK-HIIDGRTVEAKKAVPR 92
Score = 35.9 bits (79), Expect = 0.019
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +1
Query: 478 LKKLFVAGLKQDIEEEDLREYFSTFGNIV 564
L KLF+ G+ D +EE L+EYF +G++V
Sbjct: 14 LGKLFIGGISWDTDEERLQEYFGKYGDLV 42
Score = 32.3 bits (70), Expect = 0.23
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 481 KKLFVAGLKQDIEEEDLREYFSTFGNI 561
KK+FV GL I E + + YF FG I
Sbjct: 122 KKIFVGGLPSSITEAEFKNYFDQFGTI 148
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 83.0 bits (196), Expect = 1e-16
Identities = 35/83 (42%), Positives = 57/83 (68%)
Frame = +2
Query: 194 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 373
P +++K+F+GGL T++ K+++ Q+G I DVVVM D +T+R +GFGFI+Y VD
Sbjct: 29 PSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVD 88
Query: 374 EAQNNRPHKIDGRIVEPKRAVPR 442
+ H+++G++VE K AVP+
Sbjct: 89 KVLQKTFHELNGKMVEVKLAVPK 111
Score = 31.9 bits (69), Expect = 0.31
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 481 KKLFVAGLKQDIEEEDLREYFSTFGNI 561
KK+FV GL + E + ++YF+ FG I
Sbjct: 33 KKIFVGGLASSVTEAEFKKYFAQFGMI 59
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 83.0 bits (196), Expect = 1e-16
Identities = 35/83 (42%), Positives = 57/83 (68%)
Frame = +2
Query: 194 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 373
P +++K+F+GGL T++ K+++ Q+G I DVVVM D +T+R +GFGFI+Y VD
Sbjct: 102 PSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVD 161
Query: 374 EAQNNRPHKIDGRIVEPKRAVPR 442
+ H+++G++VE K AVP+
Sbjct: 162 KVLQKTFHELNGKMVEVKLAVPK 184
Score = 78.2 bits (184), Expect = 4e-15
Identities = 32/78 (41%), Positives = 56/78 (71%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
KLFIGG+ + T++ L++++ +GE+++ V+MKD T R++GFGF+ ++ ++ +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 389 RPHKIDGRIVEPKRAVPR 442
+ H IDG+IVE K+AVPR
Sbjct: 67 K-HIIDGKIVEAKKAVPR 83
Score = 32.3 bits (70), Expect = 0.23
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
KLF+ G+ + E+ LR+YF +FG ++
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVL 33
Score = 31.9 bits (69), Expect = 0.31
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 481 KKLFVAGLKQDIEEEDLREYFSTFGNI 561
KK+FV GL + E + ++YF+ FG I
Sbjct: 106 KKIFVGGLASSVTEAEFKKYFAQFGMI 132
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 83.0 bits (196), Expect = 1e-16
Identities = 35/83 (42%), Positives = 57/83 (68%)
Frame = +2
Query: 194 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 373
P +++K+F+GGL T++ K+++ Q+G I DVVVM D +T+R +GFGFI+Y VD
Sbjct: 102 PSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVD 161
Query: 374 EAQNNRPHKIDGRIVEPKRAVPR 442
+ H+++G++VE K AVP+
Sbjct: 162 KVLQKTFHELNGKMVEVKLAVPK 184
Score = 78.2 bits (184), Expect = 4e-15
Identities = 32/78 (41%), Positives = 56/78 (71%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
KLFIGG+ + T++ L++++ +GE+++ V+MKD T R++GFGF+ ++ ++ +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 389 RPHKIDGRIVEPKRAVPR 442
+ H IDG+IVE K+AVPR
Sbjct: 67 K-HIIDGKIVEAKKAVPR 83
Score = 32.3 bits (70), Expect = 0.23
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
KLF+ G+ + E+ LR+YF +FG ++
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVL 33
Score = 31.9 bits (69), Expect = 0.31
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 481 KKLFVAGLKQDIEEEDLREYFSTFGNI 561
KK+FV GL + E + ++YF+ FG I
Sbjct: 106 KKIFVGGLASSVTEAEFKKYFAQFGMI 132
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 80.2 bits (189), Expect = 9e-16
Identities = 36/97 (37%), Positives = 56/97 (57%)
Frame = +2
Query: 152 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 331
LN S GD Y + T+K+F+GGL TD ++++E +G + DV +M D T R +
Sbjct: 95 LNTSRSSGGDAYNK---TKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPR 151
Query: 332 GFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPR 442
GFGF+++ VD + H + G+ VE KRA+P+
Sbjct: 152 GFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPK 188
Score = 68.9 bits (161), Expect = 2e-12
Identities = 30/78 (38%), Positives = 48/78 (61%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
KLF+GG+ + T + L+E + +GE+ +VM+D T R +GFGF+ +S ++D
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 389 RPHKIDGRIVEPKRAVPR 442
+ H ID R V+ KRA+ R
Sbjct: 67 K-HSIDTREVDVKRAMSR 83
Score = 31.9 bits (69), Expect = 0.31
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNI 561
KLFV G+ + +E+ LRE+F+ +G +
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEV 32
Score = 31.9 bits (69), Expect = 0.31
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 481 KKLFVAGLKQDIEEEDLREYFSTFGNI 561
KK+FV GL + +E+ R+YF +G +
Sbjct: 110 KKIFVGGLPPTLTDEEFRQYFEVYGPV 136
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 79.0 bits (186), Expect = 2e-15
Identities = 33/80 (41%), Positives = 50/80 (62%)
Frame = +2
Query: 203 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 382
T+K+F+GGL TT+ K ++E++G DVVVM D T R +GFGF+TY V+
Sbjct: 119 TKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVM 178
Query: 383 NNRPHKIDGRIVEPKRAVPR 442
+ H++ + VE KRA+P+
Sbjct: 179 QSNFHELSDKRVEVKRAIPK 198
Score = 54.4 bits (125), Expect = 5e-08
Identities = 24/76 (31%), Positives = 50/76 (65%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
KLF+GG+ T++ +LK+++ ++G +++ VV K+ T + +GFGF+ ++ V +A +
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 389 RPHKIDGRIVEPKRAV 436
H I G+ V+ ++A+
Sbjct: 67 -THFILGKPVDVRKAI 81
Score = 32.7 bits (71), Expect = 0.18
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
KLFV G+ ++ EE L++YFS +G ++
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVL 33
Score = 31.9 bits (69), Expect = 0.31
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 481 KKLFVAGLKQDIEEEDLREYFSTFG 555
KK+FV GL + EE+ + YF FG
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFERFG 144
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 77.0 bits (181), Expect = 8e-15
Identities = 44/105 (41%), Positives = 64/105 (60%), Gaps = 10/105 (9%)
Frame = +2
Query: 161 KPSES---GDDYEEP------EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDP 313
KPSE DD +P + K+F+GGL TT + + + ++GEI D V+MKD
Sbjct: 18 KPSEDIEDDDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDR 77
Query: 314 KTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPRG 445
KT + +GFGF+TY+ + +VD+ Q+N H I G+ VE KR +PRG
Sbjct: 78 KTGQPRGFGFVTYADSSVVDKVIQDN--HIIIGKQVEIKRTIPRG 120
Score = 71.3 bits (167), Expect = 4e-13
Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Frame = +2
Query: 203 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE-- 376
T+K+F+GG+ D KEF+ Q+GE+ + +M+D T RS+GFGF+TY MVD
Sbjct: 129 TKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLL 188
Query: 377 AQNNRPHKIDGRIVEPKRAVPR 442
A+ NR ++ G VE K+A P+
Sbjct: 189 AKGNR-IELSGTQVEIKKAEPK 209
Score = 31.5 bits (68), Expect = 0.41
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +1
Query: 481 KKLFVAGLKQDIEEEDLREYFSTFGNI 561
KK+FV G+ +++++ +E+F FG +
Sbjct: 130 KKIFVGGIPSSVDDDEFKEFFMQFGEL 156
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 71.7 bits (168), Expect = 3e-13
Identities = 31/78 (39%), Positives = 52/78 (66%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
KLFIGG+ + T ++ L+E++ +GE++ V VM++ T R +GFGF+ +S ++D +
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 389 RPHKIDGRIVEPKRAVPR 442
+ H ID R V+ KRA+ R
Sbjct: 67 K-HHIDNRDVDVKRAMSR 83
Score = 69.7 bits (163), Expect = 1e-12
Identities = 29/80 (36%), Positives = 49/80 (61%)
Frame = +2
Query: 203 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 382
T+K+F+GGL T + ++E +G + D V+M D T+R +GFGF+++ VD
Sbjct: 109 TKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVL 168
Query: 383 NNRPHKIDGRIVEPKRAVPR 442
+ H ++G+ VE KRA+P+
Sbjct: 169 HKTFHDLNGKQVEVKRALPK 188
Score = 35.9 bits (79), Expect = 0.019
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
KLF+ G+ D +E LREYFS FG ++
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVL 33
Score = 30.3 bits (65), Expect = 0.95
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 481 KKLFVAGLKQDIEEEDLREYFSTFGNI 561
KK+FV GL + ++ R YF T+G +
Sbjct: 110 KKIFVGGLPPALTSDEFRAYFETYGPV 136
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 70.9 bits (166), Expect = 5e-13
Identities = 33/79 (41%), Positives = 53/79 (67%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
K+FIGGL TT++ + + ++GEI D V+M+D T + +GFGFIT++ +VD+ +
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 389 RPHKIDGRIVEPKRAVPRG 445
H I+G+ VE KR +P+G
Sbjct: 80 -THVINGKQVEIKRTIPKG 97
Score = 67.3 bits (157), Expect = 7e-12
Identities = 32/95 (33%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Frame = +2
Query: 164 PSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 343
P +G + + T+K+F+GG+ T+ LK+F+ ++G +V+ V++D +T RS+GFGF
Sbjct: 95 PKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGF 154
Query: 344 ITYSQAHMVDE--AQNNRPHKIDGRIVEPKRAVPR 442
+ + +VDE ++ N D + VE K+A P+
Sbjct: 155 VIFDSEEVVDELLSKGNMIDMADTQ-VEIKKAEPK 188
Score = 35.5 bits (78), Expect = 0.025
Identities = 11/28 (39%), Positives = 22/28 (78%)
Frame = +1
Query: 481 KKLFVAGLKQDIEEEDLREYFSTFGNIV 564
KK+FV G+ + E++L+++F+ +GN+V
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVV 136
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 70.9 bits (166), Expect = 5e-13
Identities = 33/79 (41%), Positives = 53/79 (67%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
K+FIGGL TT++ + + ++GEI D V+M+D T + +GFGFIT++ +VD+ +
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 389 RPHKIDGRIVEPKRAVPRG 445
H I+G+ VE KR +P+G
Sbjct: 80 -THVINGKQVEIKRTIPKG 97
Score = 64.9 bits (151), Expect = 4e-11
Identities = 25/71 (35%), Positives = 46/71 (64%)
Frame = +2
Query: 164 PSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 343
P +G + + T+K+F+GG+ T+ LK+F+ ++G +V+ V++D +T RS+GFGF
Sbjct: 95 PKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGF 154
Query: 344 ITYSQAHMVDE 376
+ + +VDE
Sbjct: 155 VIFDSEEVVDE 165
Score = 35.5 bits (78), Expect = 0.025
Identities = 11/28 (39%), Positives = 22/28 (78%)
Frame = +1
Query: 481 KKLFVAGLKQDIEEEDLREYFSTFGNIV 564
KK+FV G+ + E++L+++F+ +GN+V
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVV 136
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 70.9 bits (166), Expect = 5e-13
Identities = 32/81 (39%), Positives = 49/81 (60%)
Frame = +2
Query: 170 ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIT 349
E G++ K+F+GGL + T +++ ++EQ+GEIV+ VV+ D T RSKG+GF+T
Sbjct: 10 EGGNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVT 69
Query: 350 YSQAHMVDEAQNNRPHKIDGR 412
+ +A A N IDGR
Sbjct: 70 FKEAEAAMRACQNMNPVIDGR 90
Score = 32.3 bits (70), Expect = 0.23
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 478 LKKLFVAGLKQDIEEEDLREYFSTFGNIV 564
L K+FV GL + + + +R YF FG IV
Sbjct: 21 LTKIFVGGLAWETQRDTMRRYFEQFGEIV 49
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 68.1 bits (159), Expect = 4e-12
Identities = 32/79 (40%), Positives = 49/79 (62%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
KLF+GG+ + TT + ++ ++GE+VD V+M D T +GFGF+T++ + V E
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADS-AVAEKVLE 125
Query: 389 RPHKIDGRIVEPKRAVPRG 445
H ID R V+ KR +PRG
Sbjct: 126 EDHVIDDRKVDLKRTLPRG 144
Score = 66.9 bits (156), Expect = 9e-12
Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Frame = +2
Query: 182 DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 361
D + TRK+F+GGL + LK ++ +G+I++ +M D T RS+GFGF+T+
Sbjct: 149 DIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTE 208
Query: 362 HMVDEA-QNNRPHKIDGRIVEPKRAVPR--GRD*KTRS 466
VD + + H++ + VE KRA P+ GRD RS
Sbjct: 209 DSVDRLFSDGKVHELGDKQVEIKRAEPKRTGRDNSFRS 246
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +1
Query: 424 KTSSSKGKRLKDQKLVPPLKKLFVAGLKQDIEEEDLREYFSTFGNIV 564
K + +G + D K V +K+FV GL +EE++L+ YF +G+I+
Sbjct: 138 KRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDII 184
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
KLFV G+ + E YF FG +V
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVV 93
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 64.1 bits (149), Expect = 6e-11
Identities = 31/75 (41%), Positives = 44/75 (58%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
K+++ GL + T L ++E++GEIV V+ D T+RSKGFGF+T+ + A N
Sbjct: 10 KIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACEN 69
Query: 389 RPHKIDGRIVEPKRA 433
H IDGR V K A
Sbjct: 70 PNHTIDGRTVNCKLA 84
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
K++VAGL E L YF FG IV
Sbjct: 10 KIYVAGLPWITRTEGLISYFERFGEIV 36
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 63.3 bits (147), Expect = 1e-10
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Frame = +2
Query: 188 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 367
E+PE+ + FIGGL + T+D L++ +E++G +V+ V+ D + RS+GFGFIT+ +
Sbjct: 3 EDPEY--RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60
Query: 368 VDEA-QNNRPHKIDGRIVEPKRAVP 439
+DEA +DGR + +A P
Sbjct: 61 MDEAIAAMNGMDLDGRTITVDKAQP 85
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 63.3 bits (147), Expect = 1e-10
Identities = 28/68 (41%), Positives = 47/68 (69%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
KLF+GGL + T DSSLK+ + +GE+ + V+ D +T RS+GFGF+++S +++ NN
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS----CEDSANN 91
Query: 389 RPHKIDGR 412
++DG+
Sbjct: 92 AIKEMDGK 99
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNI 561
KLFV GL ++ L++ F++FG +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEV 61
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 63.3 bits (147), Expect = 1e-10
Identities = 28/68 (41%), Positives = 47/68 (69%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
KLF+GGL + T DSSLK+ + +GE+ + V+ D +T RS+GFGF+++S +++ NN
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS----CEDSANN 91
Query: 389 RPHKIDGR 412
++DG+
Sbjct: 92 AIKEMDGK 99
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNI 561
KLFV GL ++ L++ F++FG +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEV 61
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 62.9 bits (146), Expect = 1e-10
Identities = 28/68 (41%), Positives = 43/68 (63%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
K+F+GGL + T +L++ +EQ+GEI++ VV+ D T RSKG+GF+T+ A +
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 389 RPHKIDGR 412
IDGR
Sbjct: 85 PTPIIDGR 92
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 62.9 bits (146), Expect = 1e-10
Identities = 28/68 (41%), Positives = 45/68 (66%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
K+F+GGL + T ++K+ +EQ+GEI++ VV+ D + RSKG+GF+T+ +A A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 389 RPHKIDGR 412
IDGR
Sbjct: 74 ATPVIDGR 81
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
K+FV GL + +E ++++F FG I+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEIL 40
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 62.9 bits (146), Expect = 1e-10
Identities = 28/68 (41%), Positives = 45/68 (66%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
K+F+GGL + T ++K+ +EQ+GEI++ VV+ D + RSKG+GF+T+ +A A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 389 RPHKIDGR 412
IDGR
Sbjct: 74 ATPVIDGR 81
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
K+FV GL + +E ++++F FG I+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEIL 40
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 62.9 bits (146), Expect = 1e-10
Identities = 28/68 (41%), Positives = 45/68 (66%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
K+F+GGL + T ++K+ +EQ+GEI++ VV+ D + RSKG+GF+T+ +A A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 389 RPHKIDGR 412
IDGR
Sbjct: 74 ATPVIDGR 81
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
K+FV GL + +E ++++F FG I+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEIL 40
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 62.5 bits (145), Expect = 2e-10
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 8/88 (9%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
K+F+GGL + T ++ ++EQ+GEI++ V++ D T +SKG+GF+T+ ++ A +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 389 RPHKIDGR--------IVEPKRAVPRGR 448
IDGR P+ + PRGR
Sbjct: 78 PNPVIDGRKANCNIASFGRPRPSPPRGR 105
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
K+FV GL + +++R YF FG I+
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEIL 44
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 62.5 bits (145), Expect = 2e-10
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 8/88 (9%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
K+F+GGL + T ++ ++EQ+GEI++ V++ D T +SKG+GF+T+ ++ A +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 389 RPHKIDGR--------IVEPKRAVPRGR 448
IDGR P+ + PRGR
Sbjct: 78 PNPVIDGRKANCNIASFGRPRPSPPRGR 105
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
K+FV GL + +++R YF FG I+
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEIL 44
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 62.5 bits (145), Expect = 2e-10
Identities = 28/68 (41%), Positives = 44/68 (64%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
K+F+GGL + T SL+ ++EQ+G+IV+ VV+ D + RSKG+GF+T+ +A +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 389 RPHKIDGR 412
IDGR
Sbjct: 68 PAPVIDGR 75
Score = 30.3 bits (65), Expect = 0.95
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
K+FV GL + + LR YF FG+IV
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIV 34
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 62.5 bits (145), Expect = 2e-10
Identities = 28/68 (41%), Positives = 44/68 (64%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
K+F+GGL + T SL+ ++EQ+G+IV+ VV+ D + RSKG+GF+T+ +A +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 389 RPHKIDGR 412
IDGR
Sbjct: 68 PAPVIDGR 75
Score = 30.3 bits (65), Expect = 0.95
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
K+FV GL + + LR YF FG+IV
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIV 34
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 62.1 bits (144), Expect = 3e-10
Identities = 26/80 (32%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 385
+ F+GGL + T D L+ + Q+G+++D ++ D ++ RS+GFGF+T+ + M D +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 386 NRPHKIDGRIVEPKRAVPRG 445
++DGR++ A RG
Sbjct: 67 MNGKELDGRVITVNEAQSRG 86
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
+ FV GL +EDL+ FS FG+++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVI 33
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 62.1 bits (144), Expect = 3e-10
Identities = 26/80 (32%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 385
+ F+GGL + T D L+ + Q+G+++D ++ D ++ RS+GFGF+T+ + M D +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 386 NRPHKIDGRIVEPKRAVPRG 445
++DGR++ A RG
Sbjct: 67 MNGKELDGRVITVNEAQSRG 86
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
+ FV GL +EDL+ FS FG+++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVI 33
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 62.1 bits (144), Expect = 3e-10
Identities = 26/80 (32%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 385
+ F+GGL + T D L+ + Q+G+++D ++ D ++ RS+GFGF+T+ + M D +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 386 NRPHKIDGRIVEPKRAVPRG 445
++DGR++ A RG
Sbjct: 67 MNGKELDGRVITVNEAQSRG 86
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
+ FV GL +EDL+ FS FG+++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVI 33
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 62.1 bits (144), Expect = 3e-10
Identities = 26/79 (32%), Positives = 44/79 (55%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
K+F+GG+ Y T + L+E + ++GE+VD ++ D +T RS+GF F+T++ A
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 389 RPHKIDGRIVEPKRAVPRG 445
+ GR + A RG
Sbjct: 95 DGQDLHGRRIRVNYATERG 113
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
K+FV G+ +E LRE FS +G +V
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVV 61
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 62.1 bits (144), Expect = 3e-10
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 8/96 (8%)
Frame = +2
Query: 185 YEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAH 364
+ + HT K+F+GGL + T ++ +++Q+GEI++ V++ D T +SKG+GF+T+ +
Sbjct: 11 FGDTTHT-KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSD 69
Query: 365 MVDEAQNNRPHKIDGR--------IVEPKRAVPRGR 448
A + IDGR P+ + PRGR
Sbjct: 70 SATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGR 105
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
K+FV GL + +++R YF FG I+
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEIL 44
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 61.7 bits (143), Expect = 3e-10
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QN 385
KLFIGG+ Y + SL+E + ++GE+VD V+ D +T RS+GFGF+T++ + A Q
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 386 NRPHKIDGRIVEPKRAVPR 442
+ GR+V+ A R
Sbjct: 101 LDGRDLHGRVVKVNYANDR 119
Score = 31.5 bits (68), Expect = 0.41
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
KLF+ G+ ++E+ LRE F+ +G +V
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVV 67
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 61.7 bits (143), Expect = 3e-10
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 385
K+F+G L +RTT L+ ++EQ+G++VD V+ + RSKG+GFIT+ V QN
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72
Query: 386 NRPHKIDGR 412
++P IDGR
Sbjct: 73 SKP-IIDGR 80
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
K+FV L +DLR YF FG +V
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVV 39
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 61.3 bits (142), Expect = 4e-10
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
++++G L TTD L+E + +G +VD +VM+D T RS+GFGF+TYS + A +
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 389 RPHK-IDGRIVEPK 427
K ++GR V K
Sbjct: 64 MDGKELNGRRVSVK 77
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 60.9 bits (141), Expect = 6e-10
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QN 385
++F+GGL TD L+ + ++G+I+D +M + T RS+GFGFIT++ +DE+ +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 386 NRPHKIDGRIVEPKRAVPR-GRD 451
R++ RA P+ GRD
Sbjct: 68 MHGRDFGDRVISVNRAEPKLGRD 90
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
++FV GL ++ + DL FS FG+I+
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDIL 34
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 60.9 bits (141), Expect = 6e-10
Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Frame = +2
Query: 167 SESGDDYEEPE-HTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 343
S DD E P T+KLFI GL + T++ +L+ +E +GE+V+V ++ D +KRSKG+ F
Sbjct: 268 SRDQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF 327
Query: 344 ITYSQAHMVDEAQNNRPHKIDGRIV 418
+ Y+ +EA +++G+I+
Sbjct: 328 LEYT----TEEAAGTALKEMNGKII 348
Score = 31.9 bits (69), Expect = 0.31
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 433 SSKGKRLKDQKLVPPLK--KLFVAGLKQDIEEEDLREYFSTFGNIV 564
S++ R +D PP+K KLF+ GL E+ LR F FG +V
Sbjct: 264 STQDSRDQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELV 309
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 60.9 bits (141), Expect = 6e-10
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 385
+ F+GGL + T D +L+ + Q+G+++D ++ D +T RS+GFGF+T+ + M D +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 386 NRPHKIDGRIVEPKRAVPRG 445
+DGR + A RG
Sbjct: 69 MNGQDLDGRSITVNEAQSRG 88
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 60.9 bits (141), Expect = 6e-10
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 385
+ F+GGL + T D +L+ + Q+G+++D ++ D +T RS+GFGF+T+ + M D +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 386 NRPHKIDGRIVEPKRAVPRG 445
+DGR + A RG
Sbjct: 69 MNGQDLDGRSITVNEAQSRG 88
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 60.5 bits (140), Expect = 8e-10
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Frame = +2
Query: 167 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWG--EIVDVVVMKDPKTKRSKGFG 340
SE G + EP KLF+G L Y +L +EQ G EI +V+ +D T +S+GFG
Sbjct: 100 SEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRD--TDQSRGFG 157
Query: 341 FITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPRG 445
F+T S ++A + +++GR + RA PRG
Sbjct: 158 FVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRG 193
Score = 44.8 bits (101), Expect = 4e-05
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QN 385
++++G L + L+ + + G++VD V+ D +T RS+GFGF+ S + V+ A
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 386 NRPHKIDGRIVEPKRAVPRGR 448
++GR ++ A R R
Sbjct: 268 LDGQNLEGRAIKVNVAEERTR 288
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 59.7 bits (138), Expect = 1e-09
Identities = 28/75 (37%), Positives = 45/75 (60%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
K+++GGL + T L F++++GEI+ V V+ D +T RS+G+GF+T+ A A +
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 389 RPHKIDGRIVEPKRA 433
I+GRI K A
Sbjct: 74 PNPTIEGRITNCKLA 88
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 59.7 bits (138), Expect = 1e-09
Identities = 28/79 (35%), Positives = 46/79 (58%)
Frame = +2
Query: 206 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 385
RKL + G+ + LK++ ++G++ D +VMKD T RS+GFG++T++ A A
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK 62
Query: 386 NRPHKIDGRIVEPKRAVPR 442
H + RI+E K A P+
Sbjct: 63 GE-HFLGNRILEVKVATPK 80
Score = 59.3 bits (137), Expect = 2e-09
Identities = 29/102 (28%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Frame = +2
Query: 149 ILNMKPSESGDDYEEP-EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKR 325
IL +K + ++ +P + ++F+ + ++S + +E++GEI D+ + KD +K+
Sbjct: 71 ILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQ 130
Query: 326 SKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRGRD 451
+G GFIT+S A V++ + H + G V RA P+ D
Sbjct: 131 HRGIGFITFSSADSVEDLMED-THDLGGTTVAVDRATPKEDD 171
Score = 54.4 bits (125), Expect = 5e-08
Identities = 25/77 (32%), Positives = 43/77 (55%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
K+F+G L + L++++ ++G I D + KDPK +GFGF+T+++ + D
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVA-R 299
Query: 389 RPHKIDGRIVEPKRAVP 439
R H+I G+ V A P
Sbjct: 300 RSHEICGQEVAIDSATP 316
Score = 32.3 bits (70), Expect = 0.23
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNI 561
K+FV L Q+ +DLR+YF FG+I
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHI 266
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 481 KKLFVAGLKQDIEEEDLREYFSTFGNI 561
+KL V G+ DI+ + L++Y S FG++
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDL 29
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 59.7 bits (138), Expect = 1e-09
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
K+F+GGL T LKE + +G+IVD VV+ D ++ S+GFGF+TY + + A
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 389 RPHK-IDGRIV 418
+K +DGRI+
Sbjct: 97 MQNKELDGRII 107
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
K+FV GL + E L+E F +FG IV
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIV 63
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 59.3 bits (137), Expect = 2e-09
Identities = 26/68 (38%), Positives = 42/68 (61%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
K+F+GGL + T +L+ ++Q+G+I++ VV+ D T RSKG+GF+T+ A +
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 389 RPHKIDGR 412
IDGR
Sbjct: 85 PTPIIDGR 92
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 58.4 bits (135), Expect = 3e-09
Identities = 27/58 (46%), Positives = 40/58 (68%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 382
KLFIGGL + TT+ L E + + G++V+ ++ D + RSKGFGF+T++ A DEAQ
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASA---DEAQ 89
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 58.0 bits (134), Expect = 4e-09
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Frame = +2
Query: 182 DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 361
++ EP KLF+G L Y +L +EQ G + V+ + +T +S+GFGF+T S
Sbjct: 142 EFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSV 201
Query: 362 HMVDEA-QNNRPHKIDGRIVEPKRAVPRG 445
+ A + + ++GR++ +A PRG
Sbjct: 202 DEAETAVEKFNRYDLNGRLLTVNKAAPRG 230
Score = 46.4 bits (105), Expect = 1e-05
Identities = 18/57 (31%), Positives = 37/57 (64%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 379
++++G L + + L++ + + G++V+ V+ D +T RS+GFGF+T S ++EA
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEA 301
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 57.2 bits (132), Expect = 7e-09
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
KLFIGGL + T D+SL++ + +G++VD V+ D +T RS+GFGF+ ++ A +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 389 RPHK-IDGRIVEPKRAVPR 442
K ++GR + A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
KLF+ GL ++ LR+ F+ FG++V
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVV 62
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 57.2 bits (132), Expect = 7e-09
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
KLFIGGL + T D+SL++ + +G++VD V+ D +T RS+GFGF+ ++ A +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 389 RPHK-IDGRIVEPKRAVPR 442
K ++GR + A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
KLF+ GL ++ LR+ F+ FG++V
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVV 62
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 56.0 bits (129), Expect = 2e-08
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QN 385
+L++G L Y T S L + + + G +VDV ++ D T RS+GFGF+T EA Q
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 386 NRPHKIDGRIVEPK-RAVPRG 445
+I GR V+ VPRG
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRG 197
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/77 (27%), Positives = 38/77 (49%)
Frame = +2
Query: 149 ILNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRS 328
++ K ++ Y + H K++ G L + T LK+ + ++ V+ + T RS
Sbjct: 202 VMRTKIRDNNRSYVDSPH--KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRS 259
Query: 329 KGFGFITYSQAHMVDEA 379
+GFGFI++ A V A
Sbjct: 260 RGFGFISFESAENVQSA 276
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 56.0 bits (129), Expect = 2e-08
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
+LF+ GL TT+ L++ + +G++VD V+ D + RSKGFGF+TY+ ++A+
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 389 RPHK-IDGRIVEPKRAVPR 442
K +DG ++ A PR
Sbjct: 95 MNAKFLDGWVIFVDPARPR 113
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
+LFV+GL + E L++ F++FG +V
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLV 61
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 55.2 bits (127), Expect = 3e-08
Identities = 23/68 (33%), Positives = 43/68 (63%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
K+F+GGL + T ++ + + ++G+I++ V++ D T+RSKG+GF+T+ A A +
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 389 RPHKIDGR 412
I+GR
Sbjct: 78 STPIINGR 85
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 54.8 bits (126), Expect = 4e-08
Identities = 26/70 (37%), Positives = 39/70 (55%)
Frame = +2
Query: 206 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 385
RKLFI GL TT L+ + +G++ + +V+ D T +SKG+GF+T+ A
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
Query: 386 NRPHKIDGRI 415
KIDGR+
Sbjct: 135 EPSKKIDGRV 144
Score = 31.5 bits (68), Expect = 0.41
Identities = 18/77 (23%), Positives = 34/77 (44%)
Frame = +2
Query: 206 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 385
RK+++ + + L + +G++ + + D T +S+GF Y A A
Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226
Query: 386 NRPHKIDGRIVEPKRAV 436
+ IDG+ + K AV
Sbjct: 227 DPVKVIDGKHLNCKLAV 243
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 54.8 bits (126), Expect = 4e-08
Identities = 26/70 (37%), Positives = 39/70 (55%)
Frame = +2
Query: 206 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 385
RKLFI GL TT L+ + +G++ + +V+ D T +SKG+GF+T+ A
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
Query: 386 NRPHKIDGRI 415
KIDGR+
Sbjct: 135 EPSKKIDGRV 144
Score = 31.5 bits (68), Expect = 0.41
Identities = 18/77 (23%), Positives = 34/77 (44%)
Frame = +2
Query: 206 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 385
RK+++ + + L + +G++ + + D T +S+GF Y A A
Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226
Query: 386 NRPHKIDGRIVEPKRAV 436
+ IDG+ + K AV
Sbjct: 227 DPVKVIDGKHLNCKLAV 243
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 54.4 bits (125), Expect = 5e-08
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
+LF+ L TTD SL++ + +G+I + +++D +T+R KGFGFIT+ +A +
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 389 RPHKI-DGRIV 418
KI DGR++
Sbjct: 68 LDGKIVDGRLI 78
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 54.4 bits (125), Expect = 5e-08
Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 385
KL++ GL +RTT+ +L++ +EQ+G ++ + ++ D R KGF F+ Y ++ + Q
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 386 NRPHKIDGRIVEPKRAVPR 442
+DGR++ + A R
Sbjct: 138 MHGKFLDGRVIFVEEAKTR 156
Score = 31.1 bits (67), Expect = 0.54
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 475 PLKKLFVAGLKQDIEEEDLREYFSTFGNIV 564
P KL+V+GL E+ LR+ F FGN++
Sbjct: 75 PKTKLYVSGLSFRTTEDTLRDTFEQFGNLI 104
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 54.4 bits (125), Expect = 5e-08
Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Frame = +2
Query: 152 LNMKPSES-GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRS 328
L+ P+ S D E P ++ L++ GL +R T+ L++ + + G++ DV ++ DP T+ S
Sbjct: 58 LSRSPTRSVSSDAENPGNS--LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRES 115
Query: 329 KGFGFITYSQAHMVDEAQNNRPHKI-DGRIVEPKRA 433
+GFGFI+ + + H + GR++ ++A
Sbjct: 116 RGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKA 151
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 53.6 bits (123), Expect = 9e-08
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
+L++G L + D +L+ + + G++V+ V+ D + RSKGFGF+T S + V +A N+
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Query: 389 -RPHKIDG---RIVEPKRAVPRGR 448
+DG R+ E + PRG+
Sbjct: 310 LNGADLDGRQIRVSEAEARPPRGQ 333
Score = 50.4 bits (115), Expect = 8e-07
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQN 385
KLF+G L + + L + +E G + V V+ D T RS+GFGF+T S A V+ AQ
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 386 NRPHKIDGR 412
++ +GR
Sbjct: 160 FNGYEFEGR 168
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 53.6 bits (123), Expect = 9e-08
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
+L++G L + D +L+ + + G++V+ V+ D + RSKGFGF+T S + V +A N+
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 389 -RPHKIDG---RIVEPKRAVPRGR 448
+DG R+ E + PRG+
Sbjct: 318 LNGADLDGRQIRVSEAEARPPRGQ 341
Score = 50.4 bits (115), Expect = 8e-07
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQN 385
KLF+G L + + L + +E G + V V+ D T RS+GFGF+T S A V+ AQ
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 386 NRPHKIDGR 412
++ +GR
Sbjct: 160 FNGYEFEGR 168
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = +2
Query: 185 YEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQA 361
Y E EH KLF+G L + T SL + + G++V V+ D T RS+G+GF+ Y S+A
Sbjct: 172 YPETEH--KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKA 229
Query: 362 HMVDEAQNNRPHKIDGRIV 418
M ++ +++GR +
Sbjct: 230 EMETALESLDGFELEGRAI 248
Score = 33.1 bits (72), Expect = 0.13
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWG--EIVDVVVMKDPKTKRSKGFGFITYS 355
KL+ G L Y ++L + + + E+V+V+ +D T +S+GF F+T S
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRD--TGQSRGFAFVTMS 134
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Frame = +2
Query: 152 LNMKPSES-GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRS 328
L+ P+ S D E P ++ L++ GL +R T+ L++ + + G++ DV ++ DP T+ S
Sbjct: 28 LSRSPTRSVSSDAENPGNS--LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRES 85
Query: 329 KGFGFITYSQAHMVDEAQNNRPHKI-DGRIV 418
+GFGFI+ + + H + GR++
Sbjct: 86 RGFGFISMKSVGDANRCIRSLDHSVLQGRVI 116
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 52.4 bits (120), Expect = 2e-07
Identities = 19/57 (33%), Positives = 37/57 (64%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 379
+ F+GGL + T D L+ + Q+G+++D ++ D ++ RS+GFGF+T+ + +A
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
+ FV GL +EDL+ FS FG+++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVI 33
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 52.4 bits (120), Expect = 2e-07
Identities = 21/79 (26%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QN 385
++F+GGL + T+ L+ ++++G+I + +M T R +GFGFIT++ D+A ++
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 386 NRPHKIDGRIVEPKRAVPR 442
++ +++ +A P+
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 52.4 bits (120), Expect = 2e-07
Identities = 21/79 (26%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QN 385
++F+GGL + T+ L+ ++++G+I + +M T R +GFGFIT++ D+A ++
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 386 NRPHKIDGRIVEPKRAVPR 442
++ +++ +A P+
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = +2
Query: 203 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 382
T L++G LD TDS L E + Q G++V V V +D T+RS G+G++ Y+ A
Sbjct: 44 TTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRAL 103
Query: 383 N 385
N
Sbjct: 104 N 104
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 391
+FI LD +L E + +G I+ V DP + +SKG+GF+ Y DEA
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYD----TDEAAQGA 189
Query: 392 PHKIDGRIVEPKR 430
K++G ++ K+
Sbjct: 190 IDKLNGMLLNDKQ 202
Score = 33.5 bits (73), Expect = 0.10
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 361
+++ L +D L + + ++G V+M+D + K SKGFGF+ + +
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGK-SKGFGFVNFENS 274
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 487 LFVAGLKQDIEEEDLREYFSTFGNIVS 567
L+V L + + ++ LRE+F+ FG I S
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITS 355
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 51.6 bits (118), Expect = 4e-07
Identities = 28/76 (36%), Positives = 41/76 (53%)
Frame = +2
Query: 188 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 367
E+P H RK+F+ GL + T +L E ++Q+GEI D + D + +SKG+GFI Y
Sbjct: 135 EDPVH-RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSG 193
Query: 368 VDEAQNNRPHKIDGRI 415
A KI R+
Sbjct: 194 ARNALKQPQKKIGSRM 209
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +2
Query: 185 YEEPEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 361
+ EHT +K+++ + L F+ ++GEI + + D T R KGF Y +
Sbjct: 237 HSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSS 296
Query: 362 HMVDEAQNNRPHK-IDGRIVEPKRAV 436
A PHK +G I+ ++A+
Sbjct: 297 ESAKRAL-EEPHKTFEGHILHCQKAI 321
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 51.6 bits (118), Expect = 4e-07
Identities = 28/76 (36%), Positives = 41/76 (53%)
Frame = +2
Query: 188 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 367
E+P H RK+F+ GL + T +L E ++Q+GEI D + D + +SKG+GFI Y
Sbjct: 135 EDPVH-RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSG 193
Query: 368 VDEAQNNRPHKIDGRI 415
A KI R+
Sbjct: 194 ARNALKQPQKKIGSRM 209
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +2
Query: 185 YEEPEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 361
+ EHT +K+++ + L F+ ++GEI + + D T R KGF Y +
Sbjct: 237 HSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSS 296
Query: 362 HMVDEAQNNRPHK-IDGRIVEPKRAV 436
A PHK +G I+ ++A+
Sbjct: 297 ESAKRAL-EEPHKTFEGHILHCQKAI 321
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 51.6 bits (118), Expect = 4e-07
Identities = 28/76 (36%), Positives = 41/76 (53%)
Frame = +2
Query: 188 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 367
E+P H RK+F+ GL + T +L E ++Q+GEI D + D + +SKG+GFI Y
Sbjct: 135 EDPVH-RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSG 193
Query: 368 VDEAQNNRPHKIDGRI 415
A KI R+
Sbjct: 194 ARNALKQPQKKIGSRM 209
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +2
Query: 185 YEEPEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 361
+ EHT +K+++ + L F+ ++GEI + + D T R KGF Y +
Sbjct: 237 HSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSS 296
Query: 362 HMVDEAQNNRPHK-IDGRIVEPKRAV 436
A PHK +G I+ ++A+
Sbjct: 297 ESAKRAL-EEPHKTFEGHILHCQKAI 321
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 51.2 bits (117), Expect = 5e-07
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +2
Query: 191 EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 370
+ E + LF+ GL RTT L+ + Q+GE+ D V+ D + SKGFGF+ Y+
Sbjct: 51 QAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDS 110
Query: 371 DEAQNNRPHK-IDGRIVEPKRAVPR 442
+ K +DG ++ + A PR
Sbjct: 111 AKGIAGMDGKFLDGWVIFAEYARPR 135
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 475 PLKKLFVAGLKQDIEEEDLREYFSTFGNI 561
P LFV+GL + E LR F+ FG +
Sbjct: 54 PSTNLFVSGLSKRTTSEGLRTAFAQFGEV 82
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 51.2 bits (117), Expect = 5e-07
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQN 385
KLF+G L + + L + +E G + V V+ D T RS+GFGF+T S V+ AQ
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 386 NRPHKIDGR 412
+++DGR
Sbjct: 152 FNGYELDGR 160
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QN 385
++++G L + D +L+ + + G++V+ V+ D + RSKGFGF+TY + V A ++
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 386 NRPHKIDGRIVEPKRAVPR 442
+DGR + A R
Sbjct: 265 LDGADLDGRQIRVSEAEAR 283
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 50.8 bits (116), Expect = 6e-07
Identities = 21/71 (29%), Positives = 41/71 (57%)
Frame = +2
Query: 167 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 346
S +G D + T KLF+G + T+ ++ ++EQ G +++V ++KD +T + +G F+
Sbjct: 107 SFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFV 166
Query: 347 TYSQAHMVDEA 379
Y+ + D A
Sbjct: 167 KYATSKDADRA 177
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/49 (38%), Positives = 35/49 (71%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 355
KLF+G L+ + T+ ++E + Q+G + DV +M+D + ++S+G GF+ YS
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYS 259
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
KLFV + + EE++R YF GN++
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVL 147
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 50.8 bits (116), Expect = 6e-07
Identities = 21/71 (29%), Positives = 41/71 (57%)
Frame = +2
Query: 167 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 346
S +G D + T KLF+G + T+ ++ ++EQ G +++V ++KD +T + +G F+
Sbjct: 107 SFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFV 166
Query: 347 TYSQAHMVDEA 379
Y+ + D A
Sbjct: 167 KYATSKDADRA 177
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/49 (38%), Positives = 35/49 (71%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 355
KLF+G L+ + T+ ++E + Q+G + DV +M+D + ++S+G GF+ YS
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYS 259
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNIV 564
KLFV + + EE++R YF GN++
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVL 147
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 50.8 bits (116), Expect = 6e-07
Identities = 20/50 (40%), Positives = 34/50 (68%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 358
KLFIGGL + + SLK+ + +GE+ +V + D + RS+GFGF+ +++
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAE 91
Score = 34.3 bits (75), Expect = 0.058
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 475 PLKKLFVAGLKQDIEEEDLREYFSTFGNI 561
P KLF+ GL ++E+ L++ FS+FG +
Sbjct: 39 PSSKLFIGGLSWSVDEQSLKDAFSSFGEV 67
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 50.8 bits (116), Expect = 6e-07
Identities = 27/78 (34%), Positives = 40/78 (51%)
Frame = +2
Query: 206 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 385
R +F+ GL + TT +LK +E +GEI + V+ D T R+KGFGF+ + A
Sbjct: 163 RNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALK 222
Query: 386 NRPHKIDGRIVEPKRAVP 439
N ++ R V A P
Sbjct: 223 NPEKRMYNRTVSCLPARP 240
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 50.4 bits (115), Expect = 8e-07
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Frame = +2
Query: 155 NMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 334
N P+ +GD Y + LF+ L+Y +++S +K +E +G I V ++ D T + KG
Sbjct: 127 NNDPNATGDPY------KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKG 180
Query: 335 FGFITYSQAHMVDEAQNNRP-HKIDGR----IVEPKRAVPRGR 448
+ FI Y + A KIDGR VE R VP R
Sbjct: 181 YAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWR 223
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 49.6 bits (113), Expect = 1e-06
Identities = 22/74 (29%), Positives = 42/74 (56%)
Frame = +2
Query: 167 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 346
S+ + + +++ +++GG+ + T+ L + Q+GEIVDV +++D T +SKGF F+
Sbjct: 23 SDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFL 82
Query: 347 TYSQAHMVDEAQNN 388
Y A +N
Sbjct: 83 AYEDQRSTILAVDN 96
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 49.6 bits (113), Expect = 1e-06
Identities = 24/71 (33%), Positives = 37/71 (52%)
Frame = +2
Query: 206 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 385
R +F+ G + TT +LK +E +GEI + V+ D T R KG+GF+ + EA
Sbjct: 408 RNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALK 467
Query: 386 NRPHKIDGRIV 418
++ RIV
Sbjct: 468 RPEKRMYNRIV 478
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +2
Query: 182 DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 361
D ++ + F+GGL + T + S++ + ++GE+ D ++ D +T RSKGF F+T+
Sbjct: 36 DVAYADNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDE 95
Query: 362 HMVDEA-QNNRPHKIDGR 412
+ A ++DGR
Sbjct: 96 DSMRTAIDRMNGQELDGR 113
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 48.4 bits (110), Expect = 3e-06
Identities = 24/73 (32%), Positives = 42/73 (57%)
Frame = +2
Query: 203 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 382
T L + + +RTT L + ++G++VDV + +D +T S+GF F+ Y DEA
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK---DEA- 70
Query: 383 NNRPHKIDGRIVE 421
+ ++DGR+V+
Sbjct: 71 HKAVERLDGRVVD 83
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 48.4 bits (110), Expect = 3e-06
Identities = 24/73 (32%), Positives = 42/73 (57%)
Frame = +2
Query: 203 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 382
T L + + +RTT L + ++G++VDV + +D +T S+GF F+ Y DEA
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK---DEA- 70
Query: 383 NNRPHKIDGRIVE 421
+ ++DGR+V+
Sbjct: 71 HKAVERLDGRVVD 83
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 48.4 bits (110), Expect = 3e-06
Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 391
L++G LD+ TDS L +++ + ++V V V +D T S G+G++ YS ++A
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 392 PHK-IDGRIV 418
+ ++G+++
Sbjct: 108 NYSYLNGKMI 117
Score = 44.8 bits (101), Expect = 4e-05
Identities = 23/66 (34%), Positives = 34/66 (51%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 391
L++ LD TD L+E + ++G I VM+DP + SKG GF+ +S A N
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEM 388
Query: 392 PHKIDG 409
K+ G
Sbjct: 389 NGKMVG 394
Score = 36.7 bits (81), Expect = 0.011
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 352
+++ L TTD LK + Q+G I VVM+D K S+ FGF+ +
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGK-SRCFGFVNF 272
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 487 LFVAGLKQDIEEEDLREYFSTFGNIVS 567
L+V L + +E LRE F+ FG I S
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITS 356
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 47.6 bits (108), Expect = 6e-06
Identities = 18/57 (31%), Positives = 35/57 (61%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 379
++F+G LD ++ LK+ + GE+ +V ++K+P+TK+SKG F+ ++ A
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRA 271
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 47.6 bits (108), Expect = 6e-06
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNN 388
LF+ G+ + +T+ +L + + Q+G+++ V V+ D R KGF ++T+S ++A
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 389 RPHKIDGRIV 418
+DGR+V
Sbjct: 83 NAQLVDGRVV 92
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 47.6 bits (108), Expect = 6e-06
Identities = 24/69 (34%), Positives = 37/69 (53%)
Frame = +2
Query: 206 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 385
RK+F+ GL + TT +L +E +GEI + V+ D T ++KGFGF+ + EA
Sbjct: 104 RKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
Query: 386 NRPHKIDGR 412
+I R
Sbjct: 164 EPKKRILNR 172
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 47.6 bits (108), Expect = 6e-06
Identities = 24/69 (34%), Positives = 37/69 (53%)
Frame = +2
Query: 206 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 385
RK+F+ GL + TT +L +E +GEI + V+ D T ++KGFGF+ + EA
Sbjct: 104 RKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
Query: 386 NRPHKIDGR 412
+I R
Sbjct: 164 EPKKRILNR 172
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 47.2 bits (107), Expect = 8e-06
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 391
+++GGL Y T+ +++ + +G ++ V ++ D ++ R K +GF+T+S D+A +
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVND-RSVRGKCYGFVTFSNRRSADDAIEDM 67
Query: 392 PHK-IDGRIVEPKRAVPRG 445
K I GR V RG
Sbjct: 68 DGKSIGGRAVRVNDVTTRG 86
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 47.2 bits (107), Expect = 8e-06
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Frame = +2
Query: 206 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ- 382
RKL++G L + ++ L++ +E +G + V + DP+T + KGFGFI + Q AQ
Sbjct: 265 RKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQI 324
Query: 383 -NNRPHKIDGRIVE 421
N +I GR ++
Sbjct: 325 ALNGKLEIAGRTIK 338
Score = 37.1 bits (82), Expect = 0.008
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +2
Query: 191 EPEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 352
+PE R +F + + T+ + EF+ + G++ DV ++ D ++RSKG G+I +
Sbjct: 162 DPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 216
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 47.2 bits (107), Expect = 8e-06
Identities = 25/76 (32%), Positives = 41/76 (53%)
Frame = +2
Query: 152 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 331
+ + P SG E P+ ++F+GGL Y T+S ++E E +G + ++KD +T SK
Sbjct: 345 VGLTPGASGG-LEGPD---RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSK 400
Query: 332 GFGFITYSQAHMVDEA 379
G+ F Y + D A
Sbjct: 401 GYAFCVYQDLSVTDIA 416
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 47.2 bits (107), Expect = 8e-06
Identities = 25/76 (32%), Positives = 41/76 (53%)
Frame = +2
Query: 152 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 331
+ + P SG E P+ ++F+GGL Y T+S ++E E +G + ++KD +T SK
Sbjct: 345 VGLTPGASGG-LEGPD---RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSK 400
Query: 332 GFGFITYSQAHMVDEA 379
G+ F Y + D A
Sbjct: 401 GYAFCVYQDLSVTDIA 416
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 47.2 bits (107), Expect = 8e-06
Identities = 25/76 (32%), Positives = 41/76 (53%)
Frame = +2
Query: 152 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 331
+ + P SG E P+ ++F+GGL Y T+S ++E E +G + ++KD +T SK
Sbjct: 345 VGLTPGASGG-LEGPD---RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSK 400
Query: 332 GFGFITYSQAHMVDEA 379
G+ F Y + D A
Sbjct: 401 GYAFCVYQDLSVTDIA 416
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNN 388
+++ L TTD LK + ++G+I VVMKD + K SKGFGF+ + A A ++
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAARAVESL 89
Query: 389 RPHKIDGR 412
HK D +
Sbjct: 90 NGHKFDDK 97
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/72 (30%), Positives = 38/72 (52%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 391
L++ LD +D LKE + +G + VM+DP SKG GF+ ++ EA +
Sbjct: 134 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMS-- 190
Query: 392 PHKIDGRIVEPK 427
++ G+++E K
Sbjct: 191 --QLSGKMIESK 200
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS---QAHMVDEA 379
K+ + L + T++ LK + +GEI +V ++KD KRSKG+ FI ++ A + E
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIET 100
Query: 380 QNNRPHKIDGRIVEPKRAVPRGRD 451
+ R + +GR++ A P RD
Sbjct: 101 MDRRMY--NGRMIYIDIAKPGKRD 122
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 46.4 bits (105), Expect = 1e-05
Identities = 21/62 (33%), Positives = 35/62 (56%)
Frame = +2
Query: 194 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 373
P H ++FIGGL + L++ E+ GEI +V +MKD + SKG+ F+ + +
Sbjct: 112 PPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQ 171
Query: 374 EA 379
+A
Sbjct: 172 KA 173
Score = 36.3 bits (80), Expect = 0.014
Identities = 20/94 (21%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +2
Query: 164 PSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 343
P S + + L++ + T+ LKE +++ GE+ +V KR FGF
Sbjct: 278 PKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRD--FGF 335
Query: 344 ITYSQ-AHMVDEAQNNRPHKIDGRIVEPKRAVPR 442
+ Y++ + + ++ ++++G+ +E A P+
Sbjct: 336 VHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQ 369
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 46.4 bits (105), Expect = 1e-05
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +2
Query: 173 SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 352
SGD + LF+G L + TT+ +L+E ++G I ++ +++ T S+G+GF+ Y
Sbjct: 53 SGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEY 112
Query: 353 SQAHMVDEAQNNRPHK-IDGR 412
+ A + H IDGR
Sbjct: 113 ETEKEMLRAYEDAHHSLIDGR 133
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 45.6 bits (103), Expect = 2e-05
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNN 388
L+IG L D L + +GEIV V+KD T SKG+GF+ Y+ M + A Q
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 389 RPHKIDGR 412
++ +GR
Sbjct: 542 NGYRFEGR 549
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 45.6 bits (103), Expect = 2e-05
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNN 388
L+IG L D L + +GEIV V+KD T SKG+GF+ Y+ M + A Q
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 389 RPHKIDGR 412
++ +GR
Sbjct: 542 NGYRFEGR 549
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 45.6 bits (103), Expect = 2e-05
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 391
L++ LD+ T+S + + +G++ V V+KD T++S+G F+ Y +A +
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 392 PHKI-DGRIVEPKRAVPRGR 448
KI +GR + A GR
Sbjct: 119 DAKILNGRKLTVSIAADNGR 138
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 45.2 bits (102), Expect = 3e-05
Identities = 24/70 (34%), Positives = 37/70 (52%)
Frame = +2
Query: 206 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 385
RK+F+ GL + T SL + ++Q+GEI D + D + +SKG+GFI + A
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187
Query: 386 NRPHKIDGRI 415
KI R+
Sbjct: 188 QPQKKIGTRM 197
Score = 37.9 bits (84), Expect = 0.005
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +2
Query: 194 PEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 370
PE+ RK+++ + L EF+ ++GEI + + D T R KGF Y
Sbjct: 222 PENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESA 281
Query: 371 DEAQNNRPHK-IDGRIVEPKRA 433
+A PHK +G ++ +A
Sbjct: 282 KKAL-EEPHKTFEGHVLHCHKA 302
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 481 KKLFVAGLKQDIEEEDLREYFSTFGNI 561
+K++V+ + DI+ + L E+FS FG I
Sbjct: 227 RKIYVSNVSADIDPQKLLEFFSRFGEI 253
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = +2
Query: 176 GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 355
G + E P T L++ GL R TD L+ + + G++ ++ +P+T+ S+GF F+T S
Sbjct: 63 GSEVENPGTT--LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMS 120
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 44.8 bits (101), Expect = 4e-05
Identities = 18/62 (29%), Positives = 34/62 (54%)
Frame = +2
Query: 194 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 373
P H ++++GG+ T+ LK F GE+ +V +M++ + KG+ F+T+ +
Sbjct: 88 PPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAA 147
Query: 374 EA 379
EA
Sbjct: 148 EA 149
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 44.8 bits (101), Expect = 4e-05
Identities = 27/92 (29%), Positives = 49/92 (53%)
Frame = +2
Query: 152 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 331
+++ P S +++ +++ L TD+ LK + ++GEI VVMKD + K S+
Sbjct: 101 IHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGK-SR 159
Query: 332 GFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 427
FGF+ + +A EA K++G +V+ K
Sbjct: 160 RFGFVNFEKA----EAAVTAIEKMNGVVVDEK 187
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 44.4 bits (100), Expect = 5e-05
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = +2
Query: 203 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 352
T +LF+ L Y T+ L E + +G+I +V ++ D +TKRS+G +I Y
Sbjct: 260 TGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILY 309
Score = 31.1 bits (67), Expect = 0.54
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 484 KLFVAGLKQDIEEEDLREYFSTFGNI 561
+LFV L EE+L E+FSTFG I
Sbjct: 262 RLFVRNLPYTATEEELMEHFSTFGKI 287
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 44.4 bits (100), Expect = 5e-05
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 379
K+++G L T L+ + + G++V V + P T +S GFGF+T+S V+ A
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAA 234
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 44.4 bits (100), Expect = 5e-05
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 379
++F+GGL Y T+ ++E E +G + ++KD +T SKG+ F Y + D A
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIA 432
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 44.0 bits (99), Expect = 7e-05
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +2
Query: 206 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 385
R +F+G + Y T+ L+E + G +V ++ D +T + KG+GF Y A+
Sbjct: 9 RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARR 68
Query: 386 N-RPHKIDGR 412
N + ++I+GR
Sbjct: 69 NLQSYEINGR 78
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 43.6 bits (98), Expect = 9e-05
Identities = 16/55 (29%), Positives = 33/55 (60%)
Frame = +2
Query: 215 FIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 379
F+ GLD T + L + + ++G ++D ++ D T +S+ FGF+T+ + + +A
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDA 64
Score = 35.9 bits (79), Expect = 0.019
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1
Query: 490 FVAGLKQDIEEEDLREYFSTFGNIV 564
FV GL QD +E+DL + FS FGN++
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVI 34
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 43.6 bits (98), Expect = 9e-05
Identities = 26/63 (41%), Positives = 36/63 (57%)
Frame = +2
Query: 191 EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 370
+P +T +F+GGLD TD LK + Q+GEIV V K P KR GF+ +S+
Sbjct: 257 DPNNTT-VFVGGLDASVTDDHLKNVFSQYGEIVHV---KIPAGKRC---GFVQFSEKSCA 309
Query: 371 DEA 379
+EA
Sbjct: 310 EEA 312
Score = 37.1 bits (82), Expect = 0.008
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +2
Query: 197 EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI---TYSQAHM 367
+ R L+IG L Y ++ L + GE+V V+++ +T + +G+GFI +++ A
Sbjct: 59 DEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAER 118
Query: 368 VDEAQNNRP 394
V + NN P
Sbjct: 119 VLQTFNNAP 127
Score = 36.3 bits (80), Expect = 0.014
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 152 LNMKPSESGDDYEE-PEHTRKLFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKR 325
LN SGD ++ P++T +F+G L TD L E F + + V+ D T R
Sbjct: 138 LNWASLSSGDKRDDSPDYT--IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGR 195
Query: 326 SKGFGFITYS 355
+KG+GF+ +S
Sbjct: 196 TKGYGFVRFS 205
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = +2
Query: 167 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 346
S + E P T L++ GL R TD L+ + + G++ ++ +P+T+ S+GF F+
Sbjct: 61 SRGRSEVENPGTT--LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFV 118
Query: 347 TYS 355
T S
Sbjct: 119 TMS 121
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/82 (24%), Positives = 42/82 (51%)
Frame = +2
Query: 197 EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE 376
E K+++G L + T L+ + ++G IV V+ D KT R++ F F++++ D
Sbjct: 209 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDA 268
Query: 377 AQNNRPHKIDGRIVEPKRAVPR 442
A + + +GR + + + +
Sbjct: 269 ALSFNGTQYEGRRIIVREGIEK 290
Score = 31.1 bits (67), Expect = 0.54
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +2
Query: 248 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIT 349
+ L + ++ +G ++ V V ++P+T S+G G++T
Sbjct: 122 AQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVT 155
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 352
KL+IGGL T + SLK+ + + + + VM + T RS+G+GF+ +
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNF 79
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 385
+F+G L TD++L + + + D VM D KT RS+GFGF+++ A N
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 203
Score = 31.1 bits (67), Expect = 0.54
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Frame = +2
Query: 188 EEPEHTRK---LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS- 355
E PE+ + +++G L T L ++ G V+++ + +R KGFGF+ Y+
Sbjct: 256 ETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALG----AGVIEEVRVQRDKGFGFVRYNT 311
Query: 356 --QAHMVDEAQNNRPHKIDGRI 415
+A + + N +P+ + +I
Sbjct: 312 HPEAALAIQMGNTQPYLFNRQI 333
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +2
Query: 158 MKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIV-DVVVMKDPKTKRSKG 334
++ +++ D + + LFIG LD + L + + +G I + +M+DP T S+G
Sbjct: 96 IRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRG 155
Query: 335 FGFITYSQAHMVDEA 379
FGFI+Y D A
Sbjct: 156 FGFISYDSFEASDAA 170
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = +2
Query: 176 GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 355
G E +++GGLD + ++ L E + Q G +V+V V KD T + +GFI Y
Sbjct: 15 GQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYR 74
Query: 356 QAHMVDEA 379
D A
Sbjct: 75 SEEDADYA 82
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 445 KRLKDQKLVPPLKKLFVAGLKQDIEEEDLREYFSTFGNIVS 567
K +D+K + LF+ L D++E+ L + FS FG I S
Sbjct: 100 KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIAS 140
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 385
+F+G L TD++L + + + D VM D KT RS+GFGF+++ A N
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 207
Score = 27.9 bits (59), Expect = 5.0
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +2
Query: 173 SGDDYEE--PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 346
S +D E P+ T +++G L T L + G V+++ + +R KGFGF+
Sbjct: 257 SNEDAPENNPQFTT-VYVGNLSPEVTQLDLHRLFYTLG----AGVIEEVRVQRDKGFGFV 311
Query: 347 TYS 355
Y+
Sbjct: 312 RYN 314
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = +2
Query: 191 EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 370
E L++ LD D LKE + ++G + VM +P+ S+GFGF+ YS
Sbjct: 327 EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGM-SRGFGFVAYSNPEEA 385
Query: 371 DEAQNNRPHKIDGR 412
A + K+ GR
Sbjct: 386 LRALSEMNGKMIGR 399
Score = 34.3 bits (75), Expect = 0.058
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 391
+FI LD + +L E + +G I+ V D T RSKG+GF+ + + +E+
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEK----EESAQAA 192
Query: 392 PHKIDGRIVEPKR 430
K++G ++ K+
Sbjct: 193 IDKLNGMLMNDKQ 205
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 379
++IG +D R +D L + Q G ++D+ + +D +T + KGF F Y + D A
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYA 64
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/75 (25%), Positives = 38/75 (50%)
Frame = +2
Query: 188 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 367
+E R +F+G +DY T +++ ++ G + V ++ D K + KGF ++ + +
Sbjct: 86 KEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTD-KFGQPKGFAYVEFVEVEA 144
Query: 368 VDEAQNNRPHKIDGR 412
V EA ++ GR
Sbjct: 145 VQEALQLNESELHGR 159
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 41.9 bits (94), Expect = 3e-04
Identities = 29/86 (33%), Positives = 45/86 (52%)
Frame = +2
Query: 122 NILGLQV**ILNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVV 301
N L +Q N + + +GD+ +P +T +F+GGLD TD LK + Q+GE++ V
Sbjct: 235 NALPMQPAMYQNTQGANAGDN--DPNNTT-IFVGGLDANVTDDELKSIFGQFGELLHV-- 289
Query: 302 MKDPKTKRSKGFGFITYSQAHMVDEA 379
K P KR GF+ Y+ + A
Sbjct: 290 -KIPPGKRC---GFVQYANKASAEHA 311
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +2
Query: 188 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQ-WGEIVDVVVMKDPKTKRSKGFGFITYS 355
E P+HT +F+G L TD L + ++ +G + V+ D T RSKG+GF+ ++
Sbjct: 150 EGPDHT--IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFA 204
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +2
Query: 164 PSESGDDYEEP---EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 334
P Y P E R L+IG L Y ++ L + Q GE+V V V+++ T + +G
Sbjct: 7 PQPPQGSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEG 66
Query: 335 FGFITY 352
+GFI +
Sbjct: 67 YGFIEF 72
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +2
Query: 152 LNMKPSESGDDYEE-PEHTRKLFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKR 325
LN SG + P+H+ +F+G L TD L+E F + + V+ DP T R
Sbjct: 99 LNWASFGSGQKVDAGPDHS--IFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGR 156
Query: 326 SKGFGFITYSQ 358
SKG+GF+ +++
Sbjct: 157 SKGYGFVKFAE 167
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 41.1 bits (92), Expect = 5e-04
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ---AHMVDEAQ 382
L+IG + + ++ ++ F+ Q+G + V V ++ KT +SK FGFI + A + A
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121
Query: 383 NN---RPHKIDGRIVEPKRAVP 439
N+ H + ++EP+ P
Sbjct: 122 NDYLLMEHMLKVHVIEPENVKP 143
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 40.7 bits (91), Expect = 7e-04
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +2
Query: 188 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 367
+E R +++G +DY T ++ ++ G + V ++ D K + KGF ++ + +
Sbjct: 83 KEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMD-KFGQPKGFAYVEFVEVEA 141
Query: 368 VDEAQNNRPHKIDGR--IVEPKR 430
V EA ++ GR V PKR
Sbjct: 142 VQEALQLNESELHGRQLKVSPKR 164
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 40.7 bits (91), Expect = 7e-04
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +2
Query: 188 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 367
+E R +++G +DY T ++ ++ G + V ++ D K + KGF ++ + +
Sbjct: 83 KEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMD-KFGQPKGFAYVEFVEVEA 141
Query: 368 VDEAQNNRPHKIDGR--IVEPKR 430
V EA ++ GR V PKR
Sbjct: 142 VQEALQLNESELHGRQLKVSPKR 164
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 40.7 bits (91), Expect = 7e-04
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +2
Query: 170 ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMK-DPKTKRSKGFGFI 346
E+ + +E K+F+G L +EF+ Q+G I +V+++K + +++ GFGFI
Sbjct: 153 ETRNPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFI 212
Query: 347 TYSQAHMVDEAQNNRPHKIDGRIVEPK 427
Y+ +A + GRI+ K
Sbjct: 213 IYAAEKSAMKAVEFDGVEFHGRILTVK 239
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 40.7 bits (91), Expect = 7e-04
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +2
Query: 206 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 385
R+L++G L ++ L++ +E +G + V V +D +T KGFGF+ +++ A N
Sbjct: 285 RRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALN 343
Query: 386 -NRPHKIDGRIVE 421
N +I GR ++
Sbjct: 344 LNGQLEIAGRAIK 356
Score = 36.7 bits (81), Expect = 0.011
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 161 KPSESGDDYEEPEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 337
K + + +PE R +F + R T+ + EF+ + G++ DV ++ D ++RS+G
Sbjct: 166 KKEDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGI 225
Query: 338 GFITY 352
G++ +
Sbjct: 226 GYVEF 230
Score = 29.1 bits (62), Expect = 2.2
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +1
Query: 481 KKLFVAGLKQDIEEEDLREYFSTFGNI 561
++L+V L ++ E+DLR+ F +FG++
Sbjct: 285 RRLYVGNLHINMSEDDLRKVFESFGSV 311
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 40.3 bits (90), Expect = 9e-04
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +2
Query: 227 LDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKID 406
LD R D L++ +E++G + D+ + ++ T +GFGF+ Y A EA HK+
Sbjct: 56 LDARPND--LRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVI 113
Query: 407 G 409
G
Sbjct: 114 G 114
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 40.3 bits (90), Expect = 9e-04
Identities = 24/56 (42%), Positives = 33/56 (58%)
Frame = +2
Query: 191 EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 358
+P +T +F+GGLD TD LK + Q+GEIV V K P KR GF+ +S+
Sbjct: 257 DPNNTT-VFVGGLDASVTDDHLKNVFSQYGEIVHV---KIPAGKRC---GFVQFSE 305
Score = 37.1 bits (82), Expect = 0.008
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +2
Query: 197 EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI---TYSQAHM 367
+ R L+IG L Y ++ L + GE+V V+++ +T + +G+GFI +++ A
Sbjct: 59 DEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAER 118
Query: 368 VDEAQNNRP 394
V + NN P
Sbjct: 119 VLQTFNNAP 127
Score = 36.3 bits (80), Expect = 0.014
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 152 LNMKPSESGDDYEE-PEHTRKLFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKR 325
LN SGD ++ P++T +F+G L TD L E F + + V+ D T R
Sbjct: 138 LNWASLSSGDKRDDSPDYT--IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGR 195
Query: 326 SKGFGFITYS 355
+KG+GF+ +S
Sbjct: 196 TKGYGFVRFS 205
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +2
Query: 224 GLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI 403
GL TTD SL++ + + ++ KD +T+R KGFGFIT+ +A KI
Sbjct: 77 GLSAYTTDQSLRQLFAPFARLI-----KDQQTQRPKGFGFITFESEDDAQKALKALNGKI 131
Query: 404 -DGRIV 418
+GR++
Sbjct: 132 VNGRLI 137
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 391
L++GGL +S L + +G+I DV D ++ + FGF+T+ + A +N
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 392 P-HKIDGRIVEPKRAVP 439
++ GR++ A+P
Sbjct: 75 DGAELYGRVLTVNYALP 91
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +2
Query: 173 SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 352
SG + H +F+G L TD+ L + + D VM D KT RS+GFGF+++
Sbjct: 129 SGQREDTSSHFN-IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSF 187
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +2
Query: 161 KPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFG 340
K + +G+ E +++G L + L + G V+++ + +R KGFG
Sbjct: 245 KDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLG----AGVIEEVRVQRDKGFG 300
Query: 341 FITYS 355
F+ YS
Sbjct: 301 FVRYS 305
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 391
L++ LD D LKE + ++G + VM + + S+GFGF+ YS A
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGL-SRGFGFVAYSNPEEALLAMKEM 388
Query: 392 PHKIDGR 412
K+ GR
Sbjct: 389 NGKMIGR 395
Score = 37.5 bits (83), Expect = 0.006
Identities = 24/105 (22%), Positives = 50/105 (47%)
Frame = +2
Query: 38 RKEAHGIFNTAETKT*QIKLKSNS*LIINILGLQV**ILNMKPSESGDDYEEPEHTRKLF 217
R + +G + +T Q + + +++N + V + + + P T ++
Sbjct: 170 RSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTN-VY 228
Query: 218 IGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 352
+ L TD LK+ + ++G+I VVMKD ++ S+ FGF+ +
Sbjct: 229 VKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNF 272
Score = 31.9 bits (69), Expect = 0.31
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 391
+FI LD + +L E + +G I+ V D RSKG+GF+ + + +E
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEK----EETAQAA 188
Query: 392 PHKIDGRIVEPKR 430
K++G ++ K+
Sbjct: 189 IDKLNGMLLNDKQ 201
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/77 (31%), Positives = 42/77 (54%)
Frame = +2
Query: 149 ILNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRS 328
IL MK ES EE T+ LF+ L S + F++ GE+V V ++ + + K +
Sbjct: 228 ILLMKGHESPGFAEEAAITKTLFVANLRDSIQISDIINFFKDVGEVVHVRLIVNSQGKHA 287
Query: 329 KGFGFITYSQAHMVDEA 379
G+GF+ ++ A+ ++A
Sbjct: 288 -GWGFVEFASANEAEKA 303
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 188 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQ-WGEIVDVVVMKDPKTKRSKGFGFITYS 355
E PEHT +F+G L TD L E ++ + + V+ D T RSKG+GF+ ++
Sbjct: 169 EGPEHT--VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFA 223
Score = 35.9 bits (79), Expect = 0.019
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +2
Query: 152 LNMKPSE----SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKT 319
L M+P+ G+ E +F+G +D T+ LK + Q+GE+V V K P
Sbjct: 256 LTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHV---KIPAG 312
Query: 320 KRSKGFGFITYSQAHMVDEA 379
KR GF+ Y+ ++A
Sbjct: 313 KRC---GFVQYANRACAEQA 329
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 472 PPLKKLFVAGLKQDIEEEDLREYFSTFGNIV 564
P +FV + Q + E+DL+ F FG +V
Sbjct: 275 PTNTTIFVGAVDQSVTEDDLKSVFGQFGELV 305
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 38.7 bits (86), Expect = 0.003
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Frame = +2
Query: 167 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 346
S G D + + L T + L E + +G + V V D KT S+GFGF+
Sbjct: 200 SAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFV 259
Query: 347 TYSQAHMVDEAQNN-RPHKIDGRIVEPKRAVPR 442
+ A N + D I+ + A PR
Sbjct: 260 NFVSREDAQRAINKLNGYGYDNLILRVEWATPR 292
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 379
+F+GGLD TD LK+ + ++GEIV V K KG GF+ + +EA
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSV------KIPVGKGCGFVQFVNRPNAEEA 357
Score = 34.3 bits (75), Expect = 0.058
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
+F+G L +D+ L E F E++ + V+ D T RSKG+GF+ + + +A
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260
Query: 389 -RPHKIDGRIVEPKRAVPR 442
K R + A PR
Sbjct: 261 MNGVKCSSRAMRIGPATPR 279
Score = 33.9 bits (74), Expect = 0.077
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +1
Query: 487 LFVAGLKQDIEEEDLREYFSTFGNIVS 567
+FV GL + +EDL++ FS FG IVS
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVS 334
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 379
+F+GGLD TD LK+ + ++GEIV V K KG GF+ + +EA
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSV------KIPVGKGCGFVQFVNRPNAEEA 355
Score = 35.1 bits (77), Expect = 0.033
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
+F+G L +D+ L E F E++ + V+ D T RSKG+GF+ + + +A
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 389 -RPHKIDGRIVEPKRAVPR 442
K R + A PR
Sbjct: 259 MNGVKCSSRAMRIGPATPR 277
Score = 32.7 bits (71), Expect = 0.18
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 487 LFVAGLKQDIEEEDLREYFSTFGNIVS 567
+FV GL + +EDL++ F+ FG IVS
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVS 332
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 38.3 bits (85), Expect = 0.004
Identities = 14/63 (22%), Positives = 32/63 (50%)
Frame = +2
Query: 191 EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 370
E +R +F+ + + T SL + ++GE++ ++ DP T + G +I +++
Sbjct: 511 EDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAA 570
Query: 371 DEA 379
+ A
Sbjct: 571 ENA 573
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 37.9 bits (84), Expect = 0.005
Identities = 16/78 (20%), Positives = 40/78 (51%)
Frame = +2
Query: 188 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 367
+E +R +++G +DY T +++ ++ G + V ++ D K + KGF ++ + +
Sbjct: 97 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEVEA 155
Query: 368 VDEAQNNRPHKIDGRIVE 421
V + ++ GR ++
Sbjct: 156 VQNSLILNESELHGRQIK 173
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 37.9 bits (84), Expect = 0.005
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 352
KL++GG+ Y++T+ ++ ++ G I+ V P+ G FIT+
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITF 209
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 454 KDQKLVPPLKKLFVAGLKQDIEEEDLREYFSTFGNIV 564
K++ V P KL+V G+ E+++R YF + G I+
Sbjct: 153 KEEDGVVP-NKLYVGGIPYQSTEDEIRSYFRSCGVII 188
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 37.5 bits (83), Expect = 0.006
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +2
Query: 197 EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE 376
+ + +++ L TD L + Q+G + VVVM+D RS+GFGF+ + +
Sbjct: 199 QDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKK 257
Query: 377 AQNN 388
A +
Sbjct: 258 AMES 261
Score = 35.9 bits (79), Expect = 0.019
Identities = 23/77 (29%), Positives = 38/77 (49%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 391
L++ L ++ L+E + +G+IV VM + RSKGFGF+ +S E
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNC----EESKQA 360
Query: 392 PHKIDGRIVEPKRAVPR 442
++G +V+ K V R
Sbjct: 361 KRYLNGFLVDGKPIVVR 377
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 487 LFVAGLKQDIEEEDLREYFSTFGNIVS 567
L+V L + + E LRE F +G IVS
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVS 332
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 37.5 bits (83), Expect = 0.006
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Frame = +2
Query: 161 KPS-ESGDDY--EEPEHTRKLFIGGLDYRTTDSSLKEFYE-QWGEIVDVVVMKDPKTKRS 328
KPS +SG+ E+ +R + + + Y ++ F+ + G + +V+V+ DP T+
Sbjct: 426 KPSPQSGESQYQEDVSESRVIHVTNVYYAAKKEAISMFFSSKCGAVQNVIVVTDPVTRHP 485
Query: 329 KGFGFITYSQAHMVDEA 379
KG F+T++ V +A
Sbjct: 486 KGTAFVTFATKESVGKA 502
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 379
++IG + + TT+ L E + + GEI +++ D TK GF F+ + ++A
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDA 91
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 37.1 bits (82), Expect = 0.008
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 194 PEHTRKLFIGGLDYRTTDSSLKEFYE-QWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 370
P T LF+ L + LKEF++ G +V V+ +RS G+GF+++
Sbjct: 185 PVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQA 244
Query: 371 DEA 379
+ A
Sbjct: 245 EAA 247
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 421 AKTSSSKGKRLKDQKLVPPLKKLFVAGLKQDIEEEDLREYF-STFGNIVS 567
AKT K ++ P LFVA L + + L+E+F + GN+VS
Sbjct: 169 AKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVS 218
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 37.1 bits (82), Expect = 0.008
Identities = 18/72 (25%), Positives = 36/72 (50%)
Frame = +2
Query: 170 ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIT 349
E + E E + KLF+G + ++S L ++++ + +V ++KD T+ S+G F+
Sbjct: 6 EENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLL 65
Query: 350 YSQAHMVDEAQN 385
D+ N
Sbjct: 66 CPSREEADKLVN 77
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 37.1 bits (82), Expect = 0.008
Identities = 18/72 (25%), Positives = 36/72 (50%)
Frame = +2
Query: 170 ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIT 349
E + E E + KLF+G + ++S L ++++ + +V ++KD T+ S+G F+
Sbjct: 6 EENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLL 65
Query: 350 YSQAHMVDEAQN 385
D+ N
Sbjct: 66 CPSREEADKLVN 77
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +2
Query: 188 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 352
E PE+ +LF G L D L + + ++ V++D +T ++KG+GF+++
Sbjct: 131 EWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSF 185
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 37.1 bits (82), Expect = 0.008
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 391
+F+GGLD T+ L + + +GE+V V K KG GF+ ++ +EA N
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSV------KIPVGKGCGFVQFANRQSAEEAIGNL 382
Query: 392 PHKIDGR 412
+ G+
Sbjct: 383 NGTVIGK 389
Score = 35.5 bits (78), Expect = 0.025
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +1
Query: 487 LFVAGLKQDIEEEDLREYFSTFGNIVS 567
+FV GL D+ EEDL + FS FG +VS
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVS 355
Score = 30.7 bits (66), Expect = 0.72
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITY 352
+F+G L +D+ L E F ++ + V+ D T RSKG+GF+ +
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRF 262
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 36.7 bits (81), Expect = 0.011
Identities = 23/81 (28%), Positives = 38/81 (46%)
Frame = +2
Query: 203 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 382
++ LF G L Y+ S ++ F+++ GE+VD V + KG+G I ++ +A
Sbjct: 383 SKTLFAGNLSYQIARSDIENFFKEAGEVVD-VRLSSFDDGSFKGYGHIEFASPEEAQKAL 441
Query: 383 NNRPHKIDGRIVEPKRAVPRG 445
+ GR V A RG
Sbjct: 442 EMNGKLLLGRDVRLDLANERG 462
Score = 32.7 bits (71), Expect = 0.18
Identities = 24/99 (24%), Positives = 39/99 (39%)
Frame = +2
Query: 155 NMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 334
N P G+ + + F L L+ + + GE+ V V D +T S+G
Sbjct: 466 NSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRG 525
Query: 335 FGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRGRD 451
F +I + DEA +I G + + + PR D
Sbjct: 526 FAYIDLTSG--FDEALQLSGSEIGGGNIHVEESRPRDSD 562
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 36.3 bits (80), Expect = 0.014
Identities = 23/78 (29%), Positives = 40/78 (51%)
Frame = +2
Query: 194 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 373
P L+I LD + ++ L + +G+++ V+ KD + + S+GF FI + A D
Sbjct: 13 PRKFTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGE-SRGFAFIEFESA---D 68
Query: 374 EAQNNRPHKIDGRIVEPK 427
A H +DGR++ K
Sbjct: 69 SAGRAMLH-MDGRLIGQK 85
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 36.3 bits (80), Expect = 0.014
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 391
L + L ++ LKE + +GE++ V + D +G G++ + ++AQ
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 392 P-HKIDGRIVEPKRAVP 439
+IDG++V+ +P
Sbjct: 160 DGAQIDGKVVKATFTLP 176
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 436 SKGKRLKDQKLVPPLKKLFVAGLKQDIEEEDLREYFSTFGNIV 564
SKG +K V L V L +++ E L+E F FG ++
Sbjct: 83 SKGASSPSKKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVI 125
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 36.3 bits (80), Expect = 0.014
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 391
L + L ++ LKE + +GE++ V + D +G G++ + ++AQ
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 392 P-HKIDGRIVEPKRAVP 439
+IDG++V+ +P
Sbjct: 160 DGAQIDGKVVKATFTLP 176
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 436 SKGKRLKDQKLVPPLKKLFVAGLKQDIEEEDLREYFSTFGNIV 564
SKG +K V L V L +++ E L+E F FG ++
Sbjct: 83 SKGASSPSKKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVI 125
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 35.9 bits (79), Expect = 0.019
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 355
+++ ++ T+ L++ + Q G I +M D K K SKGFGF+ +S
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGK-SKGFGFVCFS 352
Score = 32.7 bits (71), Expect = 0.18
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +1
Query: 442 GKRLKDQKLVPPLKK---LFVAGLKQDIEEEDLREYFSTFGNIVS 567
GK +K V P +K L++ L D+ E+ LRE F+ FG IVS
Sbjct: 185 GKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVS 229
Score = 31.9 bits (69), Expect = 0.31
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +1
Query: 454 KDQKLVPPLKKLFVAGLKQDIEEEDLREYFSTFGNIVS 567
++QK++ + ++V + + EE+LR++FS G I S
Sbjct: 295 EEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITS 332
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 35.9 bits (79), Expect = 0.019
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIV----DVVVMKDPKTKRSKGFGFITYSQAHMVDEA 379
+F+G L TD++L + + + D VM D KT RS+GFGF+++ A
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTA 209
Query: 380 QN 385
N
Sbjct: 210 IN 211
Score = 27.9 bits (59), Expect = 5.0
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +2
Query: 173 SGDDYEE--PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 346
S +D E P+ T +++G L T L + G V+++ + +R KGFGF+
Sbjct: 261 SNEDAPENNPQFTT-VYVGNLSPEVTQLDLHRLFYTLG----AGVIEEVRVQRDKGFGFV 315
Query: 347 TYS 355
Y+
Sbjct: 316 RYN 318
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 35.5 bits (78), Expect = 0.025
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +2
Query: 218 IGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPH 397
+ GL ++T+ L + +WG + V V+++ + S+GF FI + + H
Sbjct: 302 VKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEH 361
Query: 398 K---IDGRIVEPKRAVPRGR 448
+DGR + + P GR
Sbjct: 362 DGIVLDGRKLMFHYSQPTGR 381
Score = 33.1 bits (72), Expect = 0.13
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +2
Query: 152 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 331
+ + S +G E T L + GLD + L+ + + I D+ +++D T S+
Sbjct: 440 VGLSNSAAGKRISETGPTHVLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSR 499
Query: 332 GFGFITY---SQAHMVDEAQNNRPHKIDGRIV 418
GF F+ + A EA N + +G+I+
Sbjct: 500 GFAFVHFYSVEDATKALEATNRTALERNGKIL 531
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 35.5 bits (78), Expect = 0.025
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +2
Query: 161 KPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFG 340
K ++ DD+E R LFI L + T +K+ + +GE+ + ++ TKR +G
Sbjct: 551 KETQDNDDFE-----RTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTA 605
Query: 341 FITYSQA 361
F+ + A
Sbjct: 606 FVKFKTA 612
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 35.1 bits (77), Expect = 0.033
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 358
KL+I LDY + +KE + + GE+ V D ++ RSKG + YS+
Sbjct: 87 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSR 135
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 35.1 bits (77), Expect = 0.033
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 358
KL+I LDY + +KE + + GE+ V D ++ RSKG + YS+
Sbjct: 23 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSR 71
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 35.1 bits (77), Expect = 0.033
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 358
KL+I LDY + +KE + + GE+ V D ++ RSKG + YS+
Sbjct: 89 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSR 137
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 35.1 bits (77), Expect = 0.033
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 379
+F+GG+D D L++ + Q+GE+V V K KG GF+ ++ ++A
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSV------KIPVGKGCGFVQFADRKSAEDA 372
Score = 35.1 bits (77), Expect = 0.033
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1
Query: 487 LFVAGLKQDIEEEDLREYFSTFGNIVS 567
+FV G+ D+ +EDLR+ FS FG +VS
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVS 349
Score = 34.7 bits (76), Expect = 0.044
Identities = 15/64 (23%), Positives = 33/64 (51%)
Frame = +2
Query: 197 EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE 376
+ + L++G L + ++ L + GE+ V V+++ T +S+G+GF+ + +E
Sbjct: 105 DDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEE 164
Query: 377 AQNN 388
N
Sbjct: 165 VLQN 168
Score = 33.9 bits (74), Expect = 0.077
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITY 352
+F+G L TD L E F +++ + V+ D T RSKG+GF+ +
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRF 251
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 35.1 bits (77), Expect = 0.033
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
+F+G L +D+ L E F E++ + V+ D T RSKG+GF+ + + +A
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 389 -RPHKIDGRIVEPKRAVPR 442
K R + A PR
Sbjct: 259 MNGVKCSSRAMRIGPATPR 277
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 34.7 bits (76), Expect = 0.044
Identities = 19/69 (27%), Positives = 35/69 (50%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 391
L + L + L+ +EQ+G + D+ + +D T +GFGFI + EA+
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAK--- 95
Query: 392 PHKIDGRIV 418
H++DG ++
Sbjct: 96 -HQMDGYLL 103
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 34.3 bits (75), Expect = 0.058
Identities = 17/58 (29%), Positives = 34/58 (58%)
Frame = +2
Query: 206 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 379
+ LF+ L Y T ++ +F+++ GE+V V ++ + K K G GF+ ++ + +EA
Sbjct: 127 KTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGK-LVGCGFVEFASVNEAEEA 183
Score = 34.3 bits (75), Expect = 0.058
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +2
Query: 179 DDYEEPEHTRK-LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 355
+D P + LF+ L +T S + +F+ GE+V + +M + + K G+GF+ ++
Sbjct: 234 EDERPPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKH-VGYGFVEFA 292
Query: 356 QAHMVDEAQNNR 391
A +A N+
Sbjct: 293 SADETKKALENK 304
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 34.3 bits (75), Expect = 0.058
Identities = 22/67 (32%), Positives = 35/67 (52%)
Frame = +2
Query: 152 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 331
L+MKP + D + + L++G L TT+S L E + ++G+I + V S+
Sbjct: 3 LSMKPFRADDSGFQ---SNNLWVGSLTPETTESDLTELFGRYGDIDRITVYS------SR 53
Query: 332 GFGFITY 352
GF FI Y
Sbjct: 54 GFAFIYY 60
Score = 32.7 bits (71), Expect = 0.18
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 451 LKDQKLVPPLKKLFVAGLKQDIEEEDLREYFSTFGNI 561
L P K L+V G+ ++ ++DL E FS FG I
Sbjct: 240 LNSHPYAKPCKSLWVGGIGPNVSKDDLEEEFSKFGKI 276
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 34.3 bits (75), Expect = 0.058
Identities = 18/81 (22%), Positives = 37/81 (45%)
Frame = +2
Query: 203 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 382
++ LF L + + ++ F+++ GE+VDV + +GFG + ++ + +A
Sbjct: 296 SKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKAL 355
Query: 383 NNRPHKIDGRIVEPKRAVPRG 445
+ GR + A RG
Sbjct: 356 EFHGRPLLGREIRLDIAQERG 376
Score = 33.1 bits (72), Expect = 0.13
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = +2
Query: 206 RKLFIGGLDYRTTD----SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 358
+K+F+ G D ++ ++L+E + GEI +V V D T SKG ++ +S+
Sbjct: 401 KKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSE 455
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Frame = +1
Query: 481 KKLFVAGLKQDIEEED----LREYFSTFGNI 561
KK+FV G + E+D LRE+FS+ G I
Sbjct: 401 KKIFVKGFDASLSEDDIKNTLREHFSSCGEI 431
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 33.9 bits (74), Expect = 0.077
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Frame = +2
Query: 176 GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 355
G D + + L T L E + +G + V D KT S+GFGF+++
Sbjct: 164 GSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFV 223
Query: 356 QAHMVDEAQNN-RPHKIDGRIVEPKRAVPR 442
A N + D I+ + + P+
Sbjct: 224 SREDAQRAINKLNGYGYDNLILRVEWSTPK 253
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 33.9 bits (74), Expect = 0.077
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = +2
Query: 254 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 388
L+E +E++G + DV + +D + + +GF F+ + A+ EAQ +
Sbjct: 63 LREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRS 107
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 33.5 bits (73), Expect = 0.10
Identities = 17/69 (24%), Positives = 35/69 (50%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 391
L + L + L++ +EQ+G + D+ + +D T +GFGF+ + +A+
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAK--- 94
Query: 392 PHKIDGRIV 418
H +DG ++
Sbjct: 95 -HHMDGYLL 102
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 33.5 bits (73), Expect = 0.10
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 451 LKDQKLVPPLKKLFVAGLKQDIEEEDLREYFSTFGNIVS 567
+ + ++ PP LFV L E+EDL FS FG +VS
Sbjct: 233 IPEAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVVS 271
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 33.1 bits (72), Expect = 0.13
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 385
LFI + D L ++ +G+++ V D T SK FGFI+Y A N
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 398
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 33.1 bits (72), Expect = 0.13
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 385
LFI + D L ++ +G+++ V D T SK FGFI+Y A N
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 389
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 32.3 bits (70), Expect = 0.23
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +2
Query: 209 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 358
KL+I LDY ++ +KE + + G++ + D ++ RSKG + +S+
Sbjct: 109 KLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYD-RSGRSKGTAEVVFSR 157
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 32.3 bits (70), Expect = 0.23
Identities = 15/63 (23%), Positives = 33/63 (52%)
Frame = +2
Query: 149 ILNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRS 328
++N P++S + LF+G L + TTD+ ++ Q+G + ++ + + +S
Sbjct: 186 MMNKSPTQS---FVVDNGNTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKS 242
Query: 329 KGF 337
KG+
Sbjct: 243 KGY 245
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 31.5 bits (68), Expect = 0.41
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Frame = +2
Query: 206 RKLFIGGLDYRTTDSSLKE----FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ----A 361
+ ++I L+ R LK + Q+G I+DVV +K PK +G ++T+S+
Sbjct: 10 QSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKL---RGQAWVTFSEVTAAG 66
Query: 362 HMVDEAQN 385
H V + QN
Sbjct: 67 HAVRQMQN 74
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 31.5 bits (68), Expect = 0.41
Identities = 19/78 (24%), Positives = 38/78 (48%)
Frame = +2
Query: 170 ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIT 349
ES DD E + L++GGL+ R + +++ + GEI + ++ D K F+T
Sbjct: 220 ESPDD----ESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILAD------KACAFVT 269
Query: 350 YSQAHMVDEAQNNRPHKI 403
Y+ ++A +++
Sbjct: 270 YTSREGAEKAAQELSNRL 287
>At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containing
protein low similarity to prediabetic NOD sera-reactive
autoantigen [Mus musculus] GI:6670773,
anaphase-promoting complex subunit 7 [Homo sapiens]
GI:6180015; contains Pfam profile PF00515: TPR Domain
Length = 558
Score = 31.1 bits (67), Expect = 0.54
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 272 AHRILLMKNLWFYSRVHR*KVYVCVQVLHSHRRFPKAS 159
A ++L+ + F+ R HR ++ Q LH + R PK S
Sbjct: 43 AENLILLGDALFHQREHRRAIHTYKQALHHYTRIPKQS 80
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 31.1 bits (67), Expect = 0.54
Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +2
Query: 161 KPSESGD-DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 337
K E G + E + R L++GGL+ R + +++ + GEI + ++ + K
Sbjct: 212 KAGEMGTLESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAE------KAC 265
Query: 338 GFITYSQAHMVDEAQNNRPHKI 403
F+TY+ ++A +++
Sbjct: 266 AFVTYTTREGAEKAAEELSNRL 287
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 30.7 bits (66), Expect = 0.72
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +2
Query: 188 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 361
E+P+ T ++IG + D + E G + + +DP TK+ KGFGF + A
Sbjct: 200 EKPQTT--IYIGKIATVENDFMMS-ILEFCGHVKSCLRAEDPTTKKPKGFGFYEFESA 254
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 30.3 bits (65), Expect = 0.95
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 490 FVAGLKQDIEEEDLREYFSTFGNIV 564
+V L+ D EE DL+ FS FG+++
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVI 35
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 30.3 bits (65), Expect = 0.95
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Frame = +2
Query: 197 EH-TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY---SQAH 364
EH +R LF+ ++ DS L +EQ+G+I + T + +GF I+Y A
Sbjct: 164 EHPSRTLFVRNINSNVEDSELTALFEQYGDIRTLYT-----TCKHRGFVMISYYDIRSAR 218
Query: 365 MVDEAQNNRP---HKIDGRIVEPK 427
M + N+P K+D PK
Sbjct: 219 MAMRSLQNKPLRRRKLDIHFSIPK 242
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 30.3 bits (65), Expect = 0.95
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Frame = +2
Query: 197 EH-TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY---SQAH 364
EH +R LF+ ++ DS L +EQ+G+I + T + +GF I+Y A
Sbjct: 164 EHPSRTLFVRNINSNVEDSELTALFEQYGDIRTLYT-----TCKHRGFVMISYYDIRSAR 218
Query: 365 MVDEAQNNRP---HKIDGRIVEPK 427
M + N+P K+D PK
Sbjct: 219 MAMRSLQNKPLRRRKLDIHFSIPK 242
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 29.9 bits (64), Expect = 1.2
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +2
Query: 194 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 373
P + + + L T + ++ ++Q+GEI V + + KRS +GF+ + + +
Sbjct: 1072 PANNAAICVKNLPLNATIALVENAFKQFGEIRRGGV--EVRNKRSFSYGFVEFKEENAAQ 1129
Query: 374 EAQNNRPHKIDGR--IVEPKR 430
A P ID R VE KR
Sbjct: 1130 RAIKASPVTIDLRSVYVEKKR 1150
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 212 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 337
LF+G L + TTD+ L+ ++G + +V + + +SKG+
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGY 277
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 206 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMK 307
R +F+G +Y T S L+ ++++G VD V MK
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGR-VDRVDMK 34
>At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 204
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 155 NMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEI 286
N P+ +GD Y + LF+ L+Y +++S +K +E +G I
Sbjct: 127 NNDPNATGDPY------KTLFVSRLNYESSESKIKREFESYGPI 164
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/64 (21%), Positives = 27/64 (42%)
Frame = +2
Query: 164 PSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 343
P + E R +++ +D T+ L + G++VD + DP + F F
Sbjct: 114 PGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLR--FAF 171
Query: 344 ITYS 355
+ +S
Sbjct: 172 VEFS 175
>At1g12700.1 68414.m01473 helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles PF01535: PPR repeat, PF00271:
Helicase conserved C-terminal domain
Length = 828
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 466 ASGLLISSPWNCSFWLDNSSVNFVRPIILSFINHMGLRIC 347
AS LI +C F D SS+ V ++LS + + LR C
Sbjct: 551 ASAKLIEEMKSCGFSADASSIKMVIDMLLSAMKRLTLRYC 590
>At5g13655.1 68418.m01588 hypothetical protein
Length = 395
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/51 (23%), Positives = 28/51 (54%)
Frame = +2
Query: 254 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKID 406
L ++ ++W +I+ ++ KD T +S G++ + H + +++R H D
Sbjct: 301 LDKYSDRWQDIILMLTRKDFDTTKSFILGYVLQNSIHSIWRERDDRRHGED 351
>At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing
protein similar to SP|P34909 General negative regulator
of transcription subunit 4 {Saccharomyces cerevisiae};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 989
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +1
Query: 406 RKNCRAKTSSSKGKRLKDQKLVPPLKKLFVAGLKQDIEEEDL---REYFSTFGNIV 564
+K ++K SS G++ V +++ GL ++ +EDL +EYF +G ++
Sbjct: 84 KKIQKSKPKSSDGRKPLTSVRVVQRNLVYIVGLPLNLADEDLLQRKEYFGQYGKVL 139
>At1g41855.1 68414.m04833 hypothetical protein
Length = 261
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 311 PKTKRSKGFGFITYSQAHMVDEAQNNRPH-KIDGRIVEPKRAVP 439
P+ K KGFG + + + +E++N +PH + GR+ + P
Sbjct: 13 PELKNVKGFGDLELLASKLEEESRNQKPHTRPPGRVHPAPHSTP 56
>At1g18090.2 68414.m02241 exonuclease, putative similar to
Swiss-Prot:P53695 exonuclease I (EXO I)
[Schizosaccharomyces pombe]
Length = 577
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 427 TSSSKGKRLKDQK--LVPPLKKLFVAGLKQDIEEEDLREYFST 549
+SS +DQK + L KL AG+KQD E+ ++E F T
Sbjct: 477 SSSPNSHEHEDQKECVTIDLSKLDAAGIKQDSEKNRVKETFET 519
>At1g18090.1 68414.m02240 exonuclease, putative similar to
Swiss-Prot:P53695 exonuclease I (EXO I)
[Schizosaccharomyces pombe]
Length = 577
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 427 TSSSKGKRLKDQK--LVPPLKKLFVAGLKQDIEEEDLREYFST 549
+SS +DQK + L KL AG+KQD E+ ++E F T
Sbjct: 477 SSSPNSHEHEDQKECVTIDLSKLDAAGIKQDSEKNRVKETFET 519
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +2
Query: 191 EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKD 310
E E + L++GGL+ R + + + + +GE+ + VM +
Sbjct: 220 EDESIKTLYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAE 259
>At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing
protein low similarity to transcriptional repressor
Not4-Np [Homo sapiens] GI:6856207; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif)
Length = 944
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/57 (26%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Frame = +1
Query: 406 RKNCRAKTSSSKGKRLKDQKL-VPPLKKLFVAGLKQDIEEEDL---REYFSTFGNIV 564
+K ++K+ SS+G++ + + V +++ GL ++ +EDL +EYF +G ++
Sbjct: 42 KKIQKSKSKSSEGRKQQLTSVRVIQRNLVYIVGLPLNLADEDLLQHKEYFGQYGKVL 98
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/70 (20%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 203 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 382
+R +++G L + +++ + ++G IVD+ + P R + F+ + + ++A
Sbjct: 6 SRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPP---RPPCYCFVEFEHSRDAEDAI 62
Query: 383 NNRP-HKIDG 409
R + +DG
Sbjct: 63 KGRDGYNLDG 72
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 27.9 bits (59), Expect = 5.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 478 LKKLFVAGLKQDIEEEDLREYFSTFGNI 561
+ KL+VA + + E D+R+ F +GN+
Sbjct: 109 IAKLYVAPISKTATEYDIRQVFEKYGNV 136
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 206 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 355
R +++ LD + T+ L + G++VD + DP + F FI ++
Sbjct: 173 RTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLR--FAFIEFT 220
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +2
Query: 206 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 385
R +++G L +++ + ++G IVD+ + P R G+ F+ + D+A
Sbjct: 7 RTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPP---RPPGYAFVEFEDPRDADDAIY 63
Query: 386 NRP-HKIDG 409
R + DG
Sbjct: 64 GRDGYDFDG 72
>At3g53290.1 68416.m05876 cytochrome P450, putative Similar to
Cytochrome P450 71B31 (SP:Q9SCN2)[Arabidopsis thaliana];
conatins Pfam profile: PF00067 cytochrome P450
Length = 407
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/63 (20%), Positives = 28/63 (44%)
Frame = +2
Query: 182 DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 361
D E + + G Y D ++ E+WGE+ ++ ++ K K F +I ++
Sbjct: 19 DLETCTRPKMVTTGLFSYNFKDIGFTQYGEEWGEMKKLIGLELFSPKTQKSFRYIREEES 78
Query: 362 HMV 370
++
Sbjct: 79 DLL 81
>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
recognition motif, Pfam:PF00076; contains AT-AC splice
sites at intron 8
Length = 339
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 472 PPLKKLFVAGLKQDIEEEDLREYFS 546
PP LF+ L ++I EE+LR S
Sbjct: 230 PPCNTLFIGNLGENINEEELRSLLS 254
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/58 (22%), Positives = 26/58 (44%)
Frame = +2
Query: 206 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 379
R +++ +D T+ L + G++VD + DP + F F+ ++ EA
Sbjct: 141 RTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLR--FAFVEFADDQGAHEA 196
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 182 DYEEPEH-TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 352
++ EH +R LF+ ++ DS L +E +GEI + +S+GF I+Y
Sbjct: 176 EHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYT-----ACKSRGFVMISY 228
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 182 DYEEPEH-TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 352
++ EH +R LF+ ++ DS L +E +GEI + +S+GF I+Y
Sbjct: 189 EHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYT-----ACKSRGFVMISY 241
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = +2
Query: 206 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 355
R +++ +D + T+ L + +G++VD + DP + F FI ++
Sbjct: 150 RTVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLR--FAFIEFT 197
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 206 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 355
R +++ +D + T+ +L + G++VD V DP + F FI ++
Sbjct: 169 RTVYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLR--FAFIEFT 216
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,437,434
Number of Sequences: 28952
Number of extensions: 219588
Number of successful extensions: 1031
Number of sequences better than 10.0: 203
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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