Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10g12
(669 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g47830.1 68414.m05324 clathrin coat assembly protein, putativ... 194 6e-50
At4g35410.2 68417.m05030 clathrin adaptor complex small chain fa... 159 2e-39
At2g17380.1 68415.m02007 clathrin assembly protein AP19 identica... 158 3e-39
At4g35410.1 68417.m05029 clathrin adaptor complex small chain fa... 138 3e-33
At2g19790.1 68415.m02312 clathrin adaptor complex small chain fa... 120 7e-28
At3g50860.1 68416.m05569 clathrin adaptor complex small chain fa... 112 2e-25
At1g10730.1 68414.m01223 clathrin adaptor complexes medium subun... 38 0.006
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun... 37 0.011
At1g56590.1 68414.m06508 clathrin adaptor complexes medium subun... 35 0.056
At5g50375.1 68418.m06239 cyclopropyl isomerase (CPI1) 33 0.17
At3g09800.1 68416.m01165 clathrin adaptor complex small chain fa... 32 0.40
At4g27370.1 68417.m03929 myosin family protein contains Pfam pro... 31 0.52
At3g14570.1 68416.m01845 glycosyl transferase family 48 protein ... 29 2.8
At1g64100.1 68414.m07261 pentatricopeptide (PPR) repeat-containi... 29 2.8
At5g64320.1 68418.m08079 pentatricopeptide (PPR) repeat-containi... 28 6.5
At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase f... 27 8.5
At4g07460.1 68417.m01148 hypothetical protein 27 8.5
>At1g47830.1 68414.m05324 clathrin coat assembly protein, putative
similar to clathrin coat assembly protein AP17
GB:CAA65533 GI:2959358 from [Zea mays]; contains Pfam
profile: PF01217 clathrin adaptor complex small chain
Length = 142
Score = 194 bits (472), Expect = 6e-50
Identities = 85/142 (59%), Positives = 113/142 (79%)
Frame = +1
Query: 76 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYR 255
MIRFIL+QNR GKTRLAK+Y+ ++ EK K+ EVH +V RDAK TNFVEFR K++YR
Sbjct: 1 MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYR 60
Query: 256 RYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 435
RYAGL+F +CVD+ DN L YLE+IH FVE+L+ +F NVCELDLVFNF+KVY ++DE LA
Sbjct: 61 RYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
Query: 436 GEIRETSQTKVLKQLLMLNSLE 501
GE++ETS+ +++++ L L+
Sbjct: 121 GELQETSKRAIIERMSELEKLQ 142
>At4g35410.2 68417.m05030 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 162
Score = 159 bits (386), Expect = 2e-39
Identities = 67/133 (50%), Positives = 97/133 (72%)
Frame = +1
Query: 76 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYR 255
MI F+L+ +R GK RL KWY + E+ K+I E+ V+ R K NFVE+R +K+VY+
Sbjct: 1 MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60
Query: 256 RYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 435
RYA LYFC+C+D DN L LE IH++VE+L+ YF +VCELDL+FNF+K Y ++DE+ +A
Sbjct: 61 RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
Query: 436 GEIRETSQTKVLK 474
GE++E+S+ V +
Sbjct: 121 GELQESSKKTVAR 133
>At2g17380.1 68415.m02007 clathrin assembly protein AP19 identical
to clathrin assembly protein AP19 GI:2231698 from
[Arabidopsis thaliana]
Length = 161
Score = 158 bits (384), Expect = 3e-39
Identities = 66/133 (49%), Positives = 97/133 (72%)
Frame = +1
Query: 76 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYR 255
MI F+L+ +R GK RL KWY + E+ K+I E+ V+ R K NF+E+R +K+VY+
Sbjct: 1 MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYK 60
Query: 256 RYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 435
RYA LYFC+C+D DN L LE IH++VE+L+ YF +VCELDL+FNF+K Y ++DE+ +A
Sbjct: 61 RYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
Query: 436 GEIRETSQTKVLK 474
GE++E+S+ V +
Sbjct: 121 GELQESSKKTVAR 133
>At4g35410.1 68417.m05029 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 124
Score = 138 bits (334), Expect = 3e-33
Identities = 59/110 (53%), Positives = 80/110 (72%)
Frame = +1
Query: 76 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYR 255
MI F+L+ +R GK RL KWY + E+ K+I E+ V+ R K NFVE+R +K+VY+
Sbjct: 1 MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60
Query: 256 RYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKV 405
RYA LYFC+C+D DN L LE IH++VE+L+ YF +VCELDL+FNF+KV
Sbjct: 61 RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKV 110
>At2g19790.1 68415.m02312 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 143
Score = 120 bits (290), Expect = 7e-28
Identities = 58/138 (42%), Positives = 93/138 (67%)
Frame = +1
Query: 79 IRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRR 258
IRFIL+ N+ G+TRLA++Y +E++ L E+ R+ + +FVE RN+KIVYRR
Sbjct: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVYRR 62
Query: 259 YAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 438
YA L+F + VD ++N L LE IH VE ++++F NVCELD++F+ K + +++EM + G
Sbjct: 63 YASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
Query: 439 EIRETSQTKVLKQLLMLN 492
I ETS+ +L + +++
Sbjct: 123 CIVETSKANILSPIQLMD 140
>At3g50860.1 68416.m05569 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 166
Score = 112 bits (269), Expect = 2e-25
Identities = 56/147 (38%), Positives = 92/147 (62%), Gaps = 5/147 (3%)
Frame = +1
Query: 76 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNF----- 240
MI+ +++ N GK RLAK+Y +++Q+LI V +V+ R +NF+E +
Sbjct: 1 MIKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDS 60
Query: 241 KIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVD 420
++VY+ YA LYF + D ++N L L+ I VE L++ F NVCELD+VFN+ K++ V+D
Sbjct: 61 RLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVLD 120
Query: 421 EMFLAGEIRETSQTKVLKQLLMLNSLE 501
E+ G++ ETS +V+K + ++ LE
Sbjct: 121 EIVFGGQVLETSSAEVMKAVEEISKLE 147
>At1g10730.1 68414.m01223 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 37.9 bits (84), Expect = 0.006
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Frame = +1
Query: 187 VVTVRDAKHTNFVEFRN-FKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFH 363
+ T D++ + V + N ++ +++ +Y I N N L +H V+V YF
Sbjct: 40 IETEGDSQSNDPVAYDNGVTYMFVQHSNIYLMIASRQNCNAASLLFFLHRVVDVFKHYFE 99
Query: 364 NVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLL 483
+ E L NF VY ++DEM G + ++ ++L + +
Sbjct: 100 ELEEESLRDNFVVVYELLDEMMDFG-YPQFTEARILSEFI 138
>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 37.1 bits (82), Expect = 0.011
Identities = 22/79 (27%), Positives = 39/79 (49%)
Frame = +1
Query: 247 VYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEM 426
++ +++ +Y I N N L +H V+V YF + E L NF VY ++DEM
Sbjct: 61 MFVQHSNVYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEM 120
Query: 427 FLAGEIRETSQTKVLKQLL 483
G + T + ++L + +
Sbjct: 121 MDFGYPQYT-EARILSEFI 138
>At1g56590.1 68414.m06508 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 415
Score = 34.7 bits (76), Expect = 0.056
Identities = 22/73 (30%), Positives = 37/73 (50%)
Frame = +1
Query: 265 GLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEI 444
G+ F C V L +E + +VL+EY + E + NF VY ++DEM G
Sbjct: 64 GITFLACSQVEMPPLMAIEFLCRVADVLSEYLGGLNEDLIKDNFIIVYELLDEMIDNG-F 122
Query: 445 RETSQTKVLKQLL 483
T++ +LK+++
Sbjct: 123 PLTTEPSILKEMI 135
>At5g50375.1 68418.m06239 cyclopropyl isomerase (CPI1)
Length = 280
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = -2
Query: 104 RFWIKMNLIIFTFSY--GFFFKYYFQRRVDASF 12
R+W+K NL I FSY +F+ +YF + + AS+
Sbjct: 84 RYWVKANLWIIVFSYVGNYFWTHYFFKVLGASY 116
>At3g09800.1 68416.m01165 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 179
Score = 31.9 bits (69), Expect = 0.40
Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 4/141 (2%)
Frame = +1
Query: 76 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEE--VHAVVTVRDAKHTNFVEFRNFKI- 246
+++ IL+ + GK K+Y + KL E V + + +A+ + + I
Sbjct: 8 LVKNILLLDSEGKRVAVKYYSDDWPTNAAKLSFEKYVFSKTSKTNARTEAEITLLDSNII 67
Query: 247 VYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFH-NVCELDLVFNFYKVYTVVDE 423
VY+ L+F + N+N L + F + + NV +++ + N ++ +DE
Sbjct: 68 VYKFAQDLHFFVTGGENENELILASVLQGFFDAVALLLRSNVEKMEALENLDLIFLCLDE 127
Query: 424 MFLAGEIRETSQTKVLKQLLM 486
M G + ET + ++ M
Sbjct: 128 MVDQGVVLETDPNVIAGKVAM 148
>At4g27370.1 68417.m03929 myosin family protein contains Pfam
profiles: PF00063 myosin head (motor domain), PF00612 IQ
calmodulin-binding motif
Length = 1126
Score = 31.5 bits (68), Expect = 0.52
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 243 LEISELDKVRVFRVSDGDDCMHFFYQL 163
LE LD+ RV ++ +G+ C H FYQL
Sbjct: 321 LETFSLDQSRVAQLCNGERCYHIFYQL 347
>At3g14570.1 68416.m01845 glycosyl transferase family 48 protein
contains similarity to glucan synthases
Length = 1973
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Frame = +1
Query: 145 DDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEA 324
+DDE+ ++ E T R TNFVE R+F ++R + ++ + + +
Sbjct: 476 EDDEELGVLSEEQPKPTSRWLGKTNFVETRSFWQIFRSFDRMWSFFVLSLQALIIMACHD 535
Query: 325 IHNFVEVLN-EYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLM 486
+ + ++V N F +V + + K+ + ++ + R T K+ L+
Sbjct: 536 VGSPLQVFNANIFEDVMSIFITSAILKLIKGILDIIFKWKARNTMPINEKKKRLV 590
>At1g64100.1 68414.m07261 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 666
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -1
Query: 483 QELF-EHFSLGCLPDLTSQKHFVYNRIHFIKIEDQVQLANIMEIFI*DLDKVMYGLEI 313
Q+LF E S G PD + +Y K+E+ ++L ++++ DLD V Y + I
Sbjct: 487 QDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIII 544
>At5g64320.1 68418.m08079 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 730
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -1
Query: 483 QELFEHFSLGCLPDLTSQKHFVYNRIHFIKIEDQVQLANIMEIFI*DLDKVMYG 322
Q L E F +GC+PD + + F +I + ++ N M I D + YG
Sbjct: 273 QLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYG 326
>At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase
family protein similar to pVHL-interacting
deubiquitinating enzyme 1 type II [Homo sapiens]
GI:18698435; contains Pfam profile PF00443: Ubiquitin
carboxyl-terminal hydrolase
Length = 974
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -1
Query: 297 IYIDTYTEVQTCIPPVYYLEISELDKVR-VFRVSDGDDCMHFFYQLLFFVII 145
+YI+ TE C+P Y + LD +R V C ++F L F ++
Sbjct: 600 VYINLLTEKVYCLPDSYEINDPSLDDIRHVLNPRYIRSCDYYFIVLTAFCVL 651
>At4g07460.1 68417.m01148 hypothetical protein
Length = 205
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 83 LIIFTFSYGFFFKYYFQR 30
LI+F+FS+ FF +YF R
Sbjct: 184 LILFSFSFPFFLFFYFSR 201
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,648,729
Number of Sequences: 28952
Number of extensions: 272963
Number of successful extensions: 728
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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