Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10g09
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4875| Best HMM Match : No HMM Matches (HMM E-Value=.)              123   1e-28
SB_40684| Best HMM Match : NIF (HMM E-Value=0)                         54   1e-07
SB_39225| Best HMM Match : NIF (HMM E-Value=0)                         45   6e-05
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)                     33   0.25 
SB_2044| Best HMM Match : NIF (HMM E-Value=0.0017)                     30   1.7  
SB_16644| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_4875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score =  123 bits (297), Expect = 1e-28
 Identities = 62/127 (48%), Positives = 83/127 (65%)
 Frame = +1

Query: 187 GLRAFMLVASKVWSCICYMFKKQYRALAQYQSVKYEIYPLSPVSRHRLSLVRRKILVLDL 366
           G R  ++  SK+W+ + Y+ +K  R + Q+++VKY+I+PLSPVS  RL LV+RK LVLDL
Sbjct: 77  GFRVVLVAVSKLWTLVLYVLRKNLRTVIQHKTVKYDIFPLSPVSIERLRLVKRKTLVLDL 136

Query: 367 DETLIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHPVRFFVHKRPHVDYFLDIVSQWYELV 546
           DETLIH+HHD +VR TV+PGT PDF ++V                       VSQWY+LV
Sbjct: 137 DETLIHTHHDGVVRQTVRPGTQPDFTMRVR----------------------VSQWYDLV 174

Query: 547 VFTASME 567
           +FTAS E
Sbjct: 175 IFTASTE 181



 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +1

Query: 571 YGAAVADKLXNGRGIL 618
           YGAAV D L N RGIL
Sbjct: 228 YGAAVTDHLDNNRGIL 243


>SB_40684| Best HMM Match : NIF (HMM E-Value=0)
          Length = 402

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
 Frame = +1

Query: 352 LVLDLDETLIHSHHDAMVRPTVK-PGTPPDFVLKVTIDKHPVRFFVHKRPHVDYFLDIVS 528
           LVLDLDETL+H   + +   T+  P +  D   +V         FV  RPH+ YFL+ VS
Sbjct: 219 LVLDLDETLVHCSLNKLEDATLSFPVSYQDITYQV---------FVRTRPHLKYFLERVS 269

Query: 529 QWYELVVFTASMEIYGAAVADKLXN 603
           + +E+++FTAS  +Y    ADKL N
Sbjct: 270 KVFEVILFTASKRVY----ADKLLN 290


>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
          Length = 1772

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 29/95 (30%), Positives = 45/95 (47%)
 Frame = +1

Query: 313  VSRHRLSLVRRKILVLDLDETLIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHPVRFFVHK 492
            +   RL   R+  LV+DLD+TLIH+    +      P    D V    +  HP+ +    
Sbjct: 1068 LDEERLLSTRKLALVVDLDQTLIHTTVQLV------PANMKD-VQHFVLPGHPMWYHTKF 1120

Query: 493  RPHVDYFLDIVSQWYELVVFTASMEIYGAAVADKL 597
            RP    FL  ++++YEL +FT    +Y   +A  L
Sbjct: 1121 RPWAHKFLQKIAKFYELHIFTMGTRMYAHTIARML 1155


>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
          Length = 1249

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +1

Query: 310  PVSRHRLSLVRRKILVLDLDETLIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHPVRFF 483
            P    R +  +RK ++LD +  L       +V P+  P  PP ++   ++DK P  ++
Sbjct: 1105 PADPERRTYKKRKPIILDPEMELKPLPGKPLVLPSDDPSQPPSYISDTSLDKAPYSYY 1162


>SB_2044| Best HMM Match : NIF (HMM E-Value=0.0017)
          Length = 264

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 490 KRPHVDYFLDIVSQWYELVVFTASMEIYGAAVAD 591
           KRP V++FL+ ++  +E+VVFT  +    + V D
Sbjct: 205 KRPGVEFFLNQLAPLFEIVVFTHEVGFSASPVID 238


>SB_16644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +1

Query: 274 YQSVKYEIYP-LSPVSRHRLSLVRRKIL-VLDLDETLIHSHHDAMVRPTVKPGTPPDFVL 447
           +QS K    P + P SRHR +    ++    +  +TL  SHH +    TVK G    F++
Sbjct: 124 FQSQKPLTLPFVVPYSRHRKNNPHPQMRNTYNYPDTLERSHHGSQGNVTVKKGKKTMFII 183

Query: 448 KVTID 462
             + D
Sbjct: 184 SSSPD 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,911,664
Number of Sequences: 59808
Number of extensions: 378302
Number of successful extensions: 662
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)