Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10g09
(618 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g45700.1 68418.m05618 NLI interacting factor (NIF) family pro... 75 5e-14
At1g29780.1 68414.m03641 NLI interacting factor (NIF) family pro... 64 7e-11
At1g29770.1 68414.m03640 NLI interacting factor (NIF) family pro... 64 9e-11
At5g11860.3 68418.m01388 NLI interacting factor (NIF) family pro... 57 8e-09
At5g11860.2 68418.m01387 NLI interacting factor (NIF) family pro... 57 8e-09
At5g11860.1 68418.m01386 NLI interacting factor (NIF) family pro... 57 8e-09
At5g46410.1 68418.m05712 NLI interacting factor (NIF) family pro... 54 1e-07
At1g55900.1 68414.m06411 NLI interacting factor (NIF) family pro... 39 0.002
At3g55960.1 68416.m06218 NLI interacting factor (NIF) family pro... 34 0.066
At2g04930.1 68415.m00515 NLI interacting factor (NIF) family pro... 34 0.066
At3g19600.1 68416.m02485 NLI interacting factor (NIF) family pro... 33 0.15
At3g15330.1 68416.m01935 NLI interacting factor (NIF) family pro... 32 0.26
At3g17550.1 68416.m02241 NLI interacting factor (NIF) family pro... 31 0.81
At2g33540.1 68415.m04111 CTD phosphatase-like protein 3 (CPL3) i... 29 1.9
At2g27460.1 68415.m03319 sec23/sec24 transport family protein we... 29 1.9
At1g20320.1 68414.m02536 NLI interacting factor (NIF) family pro... 29 3.3
At5g23470.1 68418.m02754 NLI interacting factor (NIF) family pro... 28 4.3
At2g36540.1 68415.m04482 NLI interacting factor (NIF) family pro... 28 5.7
>At5g45700.1 68418.m05618 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 272
Score = 74.5 bits (175), Expect = 5e-14
Identities = 41/92 (44%), Positives = 55/92 (59%)
Frame = +1
Query: 343 RKILVLDLDETLIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHPVRFFVHKRPHVDYFLDI 522
+K +VLDLDETL+HS + KP P DFV+ ID + FFV KRP VD FL
Sbjct: 97 KKTIVLDLDETLVHSSME-------KPEVPYDFVVNPKIDGQILTFFVIKRPGVDEFLKK 149
Query: 523 VSQWYELVVFTASMEIYGAAVADKLXNGRGIL 618
+ + Y++VVFTA + Y + V DKL R ++
Sbjct: 150 IGEKYQIVVFTAGLREYASLVLDKLDPERRVI 181
>At1g29780.1 68414.m03641 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 221
Score = 64.1 bits (149), Expect = 7e-11
Identities = 34/85 (40%), Positives = 53/85 (62%)
Frame = +1
Query: 343 RKILVLDLDETLIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHPVRFFVHKRPHVDYFLDI 522
++ ++LDLDETL+H+ T PG DF++ V +++ + FV KRP V FL+
Sbjct: 49 KRTIILDLDETLVHA-------TTHLPGVKHDFMVMVKMEREIMPIFVVKRPGVTEFLER 101
Query: 523 VSQWYELVVFTASMEIYGAAVADKL 597
+ + Y++VVFTA +E Y + V DKL
Sbjct: 102 LGENYKVVVFTAGLEEYASQVLDKL 126
>At1g29770.1 68414.m03640 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 278
Score = 63.7 bits (148), Expect = 9e-11
Identities = 34/92 (36%), Positives = 54/92 (58%)
Frame = +1
Query: 340 RRKILVLDLDETLIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHPVRFFVHKRPHVDYFLD 519
+++ + LDLDETL+HS + +R V DF++++ I+ + FV KRP V FL+
Sbjct: 101 KKRTIFLDLDETLVHSTMEPPIRVNV------DFMVRIKIEGAVIPMFVVKRPGVTEFLE 154
Query: 520 IVSQWYELVVFTASMEIYGAAVADKLXNGRGI 615
+S+ Y + +FTA + Y + V DKL R I
Sbjct: 155 RISKNYRVAIFTAGLPEYASQVLDKLDKNRVI 186
>At5g11860.3 68418.m01388 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 305
Score = 57.2 bits (132), Expect = 8e-09
Identities = 31/82 (37%), Positives = 47/82 (57%)
Frame = +1
Query: 352 LVLDLDETLIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHPVRFFVHKRPHVDYFLDIVSQ 531
LVLDLDETL+HS T++P DF V ++ +V RPH+ F++ VS+
Sbjct: 114 LVLDLDETLVHS--------TLEPCGEVDFTFPVNFNEEEHMVYVRCRPHLKEFMERVSR 165
Query: 532 WYELVVFTASMEIYGAAVADKL 597
+E+++FTAS IY + + L
Sbjct: 166 LFEIIIFTASQSIYAEQLLNVL 187
>At5g11860.2 68418.m01387 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 305
Score = 57.2 bits (132), Expect = 8e-09
Identities = 31/82 (37%), Positives = 47/82 (57%)
Frame = +1
Query: 352 LVLDLDETLIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHPVRFFVHKRPHVDYFLDIVSQ 531
LVLDLDETL+HS T++P DF V ++ +V RPH+ F++ VS+
Sbjct: 114 LVLDLDETLVHS--------TLEPCGEVDFTFPVNFNEEEHMVYVRCRPHLKEFMERVSR 165
Query: 532 WYELVVFTASMEIYGAAVADKL 597
+E+++FTAS IY + + L
Sbjct: 166 LFEIIIFTASQSIYAEQLLNVL 187
>At5g11860.1 68418.m01386 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 305
Score = 57.2 bits (132), Expect = 8e-09
Identities = 31/82 (37%), Positives = 47/82 (57%)
Frame = +1
Query: 352 LVLDLDETLIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHPVRFFVHKRPHVDYFLDIVSQ 531
LVLDLDETL+HS T++P DF V ++ +V RPH+ F++ VS+
Sbjct: 114 LVLDLDETLVHS--------TLEPCGEVDFTFPVNFNEEEHMVYVRCRPHLKEFMERVSR 165
Query: 532 WYELVVFTASMEIYGAAVADKL 597
+E+++FTAS IY + + L
Sbjct: 166 LFEIIIFTASQSIYAEQLLNVL 187
>At5g46410.1 68418.m05712 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 453
Score = 53.6 bits (123), Expect = 1e-07
Identities = 31/82 (37%), Positives = 46/82 (56%)
Frame = +1
Query: 352 LVLDLDETLIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHPVRFFVHKRPHVDYFLDIVSQ 531
LVLDLDETL+HS T++ DF +V + +V +RPH+ FL+ V +
Sbjct: 283 LVLDLDETLVHS--------TLESCNVADFSFRVFFNMQENTVYVRQRPHLYRFLERVGE 334
Query: 532 WYELVVFTASMEIYGAAVADKL 597
+ +V+FTAS IY + + D L
Sbjct: 335 LFHVVIFTASHSIYASQLLDIL 356
>At1g55900.1 68414.m06411 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 376
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +1
Query: 490 KRPHVDYFLDIVSQWYELVVFTASMEIYGAAVADKL 597
KRP VD FL+ + ++YE+VV++ ME+Y V +KL
Sbjct: 216 KRPGVDAFLEHLGKFYEIVVYSDQMEMYVLPVCEKL 251
>At3g55960.1 68416.m06218 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 305
Score = 34.3 bits (75), Expect = 0.066
Identities = 27/100 (27%), Positives = 53/100 (53%), Gaps = 11/100 (11%)
Frame = +1
Query: 331 SLVRRKILVLDLDETLIHSHHD-----AMVRPTVKPGTPPDFVLKVTIDKH-----PVRF 480
S +R +VLDLDETL+ ++ A+ ++ G + ++ DK + +
Sbjct: 93 SRFQRLKVVLDLDETLVCAYETSSLPAALRNQAIEAGLKWFELECLSTDKEYDGKPKINY 152
Query: 481 F-VHKRPHVDYFLDIVSQWYELVVFTASMEIYGAAVADKL 597
V +RP + FL+ +S++ +L++FTA +E Y + D++
Sbjct: 153 VTVFERPGLHEFLEQLSEFADLILFTAGLEGYARPLVDRI 192
>At2g04930.1 68415.m00515 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 277
Score = 34.3 bits (75), Expect = 0.066
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Frame = +1
Query: 307 SPVSRHRLSLVRRKILVLDLDETLIHS-------HHDAMVRPTVKPGTPPDFVLKVTIDK 465
S ++H ++ LVLDLD TL+HS + + T D + K
Sbjct: 54 SLTTKHSCLNEKKLHLVLDLDHTLLHSKLVSNLSQAERYLIQEASSRTRED-LWKFRPIG 112
Query: 466 HPVRFFVHKRPHVDYFLDIVSQWYELVVFTASMEIYGAAVADKL 597
HP+ + RP V FL ++ + + V+T IY A+ + +
Sbjct: 113 HPIDRLIKLRPFVRDFLKEANEMFTMFVYTMGSRIYAKAILEMI 156
>At3g19600.1 68416.m02485 NLI interacting factor (NIF) family
protein low similarity to CTD phosphatase [Xenopus
laevis] GI:13487713; contains Pfam profile PF03031: NLI
interacting factor
Length = 601
Score = 33.1 bits (72), Expect = 0.15
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 8/111 (7%)
Frame = +1
Query: 283 VKYEIYPLSPVSRHRLSLVRRKIL--VLDLDETLIHSHHDAMVRPTVK------PGTPPD 438
+ +E L+ +LS + K L VLDLD TL+H+ + K D
Sbjct: 363 LSHEAVALTKCFTTKLSCLNEKKLHLVLDLDHTLLHTVMVPSLSQAEKYLIEEAGSATRD 422
Query: 439 FVLKVTIDKHPVRFFVHKRPHVDYFLDIVSQWYELVVFTASMEIYGAAVAD 591
+ K+ P+ F RP + FL ++++ + V+T +Y V +
Sbjct: 423 DLWKIKAVGDPMEFLTKLRPFLRDFLKEANEFFTMYVYTKGSRVYAKQVLE 473
>At3g15330.1 68416.m01935 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 305
Score = 32.3 bits (70), Expect = 0.26
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +1
Query: 340 RRKI-LVLDLDETLIHSHHDAMVRPTVKPGTPPD-FVLKVTIDKHPVRFFVHKRPHVDYF 513
R+K+ LVLDLD TLIHS + + K + + + K+ R V RP V+ F
Sbjct: 74 RKKLHLVLDLDHTLIHSMKTSNLSKAEKYLIKEEKSGSRKDLRKYNNR-LVKFRPFVEEF 132
Query: 514 LDIVSQWYELVVFTASMEIYGAAV 585
L ++ + + +T YG AV
Sbjct: 133 LKEANKLFTMTAYTKGGSTYGQAV 156
>At3g17550.1 68416.m02241 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 296
Score = 30.7 bits (66), Expect = 0.81
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +1
Query: 352 LVLDLDETLIHSHHDAMVRPTVKPGTPPD-FVLKVTIDKHPVRFFVHKRPHVDYFLDIVS 528
LVLDLD TL+HS +++ T K + + K + RP V FL +
Sbjct: 88 LVLDLDHTLLHSIRVSLLSETEKCLIEEACSTTREDLWKLDSDYLTKLRPFVHEFLKEAN 147
Query: 529 QWYELVVFTASMEIYGAAV 585
+ + + V+T +Y ++
Sbjct: 148 ELFTMYVYTMGTRVYAESL 166
>At2g33540.1 68415.m04111 CTD phosphatase-like protein 3 (CPL3)
identical to CTD phosphatase-like 3 (CPL3) [Arabidopsis
thaliana] GI:22212705; contains Pfam profile PF03031: NLI
interacting factor
Length = 1241
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 493 RPHVDYFLDIVSQWYELVVFTASMEIYGAAVADKLXNGRGIL 618
RP + FL+ S+ YEL ++T ++Y +A KL + +G+L
Sbjct: 983 RPGIWNFLEKASKLYELHLYTMGNKLYATEMA-KLLDPKGVL 1023
>At2g27460.1 68415.m03319 sec23/sec24 transport family protein weak
similarity to SP|P53992 Protein transport protein Sec24C
(SEC24-related protein C) {Homo sapiens}; contains Pfam
domains PF04811: Sec23/Sec24 trunk domain, PF04815:
Sec23/Sec24 helical domain and PF04810: Sec23/Sec24 zinc
finger
Length = 745
Score = 29.5 bits (63), Expect = 1.9
Identities = 22/70 (31%), Positives = 31/70 (44%)
Frame = +1
Query: 256 YRALAQYQSVKYEIYPLSPVSRHRLSLVRRKILVLDLDETLIHSHHDAMVRPTVKPGTPP 435
Y AL Y + YP +SR L I LD TLI + + P++ P
Sbjct: 616 YPALMSYSTPDTLAYPRHSLSRAALITSGSPIFFLDAYTTLI-VFYSSTADPSIPFPPPQ 674
Query: 436 DFVLKVTIDK 465
D +L+ TI+K
Sbjct: 675 DCLLRQTINK 684
>At1g20320.1 68414.m02536 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 342
Score = 28.7 bits (61), Expect = 3.3
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +1
Query: 340 RRKILVLDLDETLIHSHHDAMVRPTVKPGT-PPDFVLKV-TIDKHPVRFFVHKRPHVDYF 513
R+ LVLDLD TL+HS + + K DF + T+D+ + RP V F
Sbjct: 75 RKLHLVLDLDHTLLHSIMISRLSEGEKYLLGESDFREDLWTLDR---EMLIKLRPFVHEF 131
Query: 514 LDIVSQWYELVVFTASMEIYGAAV 585
L ++ + + V+T Y AV
Sbjct: 132 LKEANEIFSMYVYTMGNRDYAQAV 155
>At5g23470.1 68418.m02754 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 302
Score = 28.3 bits (60), Expect = 4.3
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Frame = +1
Query: 352 LVLDLDETLIHSHHDAMVRPTVK---PGTPPDFVLKVTIDKHPVRFFVHKRPHVDYFLDI 522
LVLDLD+TLIH+ +++ + K +K P + RP V FL
Sbjct: 89 LVLDLDQTLIHTIKTSLLYESEKYIIEEVESRKDIKRFNTGFPEESLIKLRPFVHQFLKE 148
Query: 523 VSQWYELVVFTASMEIYGAAVADKL 597
++ + + V+T Y V + +
Sbjct: 149 CNEMFSMYVYTKGGYDYARLVLEMI 173
>At2g36540.1 68415.m04482 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 249
Score = 27.9 bits (59), Expect = 5.7
Identities = 19/77 (24%), Positives = 37/77 (48%)
Frame = +1
Query: 340 RRKILVLDLDETLIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHPVRFFVHKRPHVDYFLD 519
++K+LVL L L+H H +R K +P D V+KRP + F+
Sbjct: 47 KKKLLVLSLSGLLLHRVHKKELRKKPKNRSP---------DASCGPNLVYKRPFAEEFMK 97
Query: 520 IVSQWYELVVFTASMEI 570
+ +E+ +++++ E+
Sbjct: 98 FCLERFEVGIWSSACEL 114
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,226,705
Number of Sequences: 28952
Number of extensions: 266091
Number of successful extensions: 549
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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