Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10g08
         (601 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ174517-1|ABA08383.1|  102|Homo sapiens Slu7 protein.                 89   1e-17
DQ174516-1|ABA08382.1|  101|Homo sapiens Slu7 protein.                 89   1e-17
BC010634-1|AAH10634.1|  586|Homo sapiens SLU7 splicing factor ho...    89   1e-17
AF101074-1|AAD13774.1|  586|Homo sapiens step II splicing factor...    89   1e-17
AY486334-1|AAS59410.1|   60|Homo sapiens splicing factor protein.      56   7e-08
BC064830-1|AAH64830.1|  603|Homo sapiens TAF2 protein protein.         30   7.1  
BC047732-1|AAH47732.1|  604|Homo sapiens TAF2 protein protein.         30   7.1  
BC035673-1|AAH35673.1|  604|Homo sapiens TAF2 protein protein.         30   7.1  
AF057694-1|AAC13540.1| 1199|Homo sapiens TBP-associated factor T...    30   7.1  
AF040701-1|AAC68502.1| 1189|Homo sapiens TATA binding protein as...    30   7.1  
AF026445-1|AAC02966.1| 1199|Homo sapiens cofactor of initiator f...    30   7.1  

>DQ174517-1|ABA08383.1|  102|Homo sapiens Slu7 protein.
          Length = 102

 Score = 89.0 bits (211), Expect = 1e-17
 Identities = 41/55 (74%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
 Frame = +1

Query: 439 SREDWRKAKELEEARKAGTAPAAVDETGKDINPHIPQYIASAPWYYGTS-GPTLK 600
           +REDWRK KELEE RK G APA VDE GKDINPHIPQYI+S PWY   S  PTLK
Sbjct: 29  TREDWRKKKELEEQRKLGNAPAEVDEEGKDINPHIPQYISSVPWYIDPSKRPTLK 83


>DQ174516-1|ABA08382.1|  101|Homo sapiens Slu7 protein.
          Length = 101

 Score = 89.0 bits (211), Expect = 1e-17
 Identities = 41/55 (74%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
 Frame = +1

Query: 439 SREDWRKAKELEEARKAGTAPAAVDETGKDINPHIPQYIASAPWYYGTS-GPTLK 600
           +REDWRK KELEE RK G APA VDE GKDINPHIPQYI+S PWY   S  PTLK
Sbjct: 29  TREDWRKKKELEEQRKLGNAPAEVDEEGKDINPHIPQYISSVPWYIDPSKRPTLK 83


>BC010634-1|AAH10634.1|  586|Homo sapiens SLU7 splicing factor
           homolog (S. cerevisiae) protein.
          Length = 586

 Score = 89.0 bits (211), Expect = 1e-17
 Identities = 41/55 (74%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
 Frame = +1

Query: 439 SREDWRKAKELEEARKAGTAPAAVDETGKDINPHIPQYIASAPWYYGTS-GPTLK 600
           +REDWRK KELEE RK G APA VDE GKDINPHIPQYI+S PWY   S  PTLK
Sbjct: 29  TREDWRKKKELEEQRKLGNAPAEVDEEGKDINPHIPQYISSVPWYIDPSKRPTLK 83


>AF101074-1|AAD13774.1|  586|Homo sapiens step II splicing factor
           SLU7 protein.
          Length = 586

 Score = 89.0 bits (211), Expect = 1e-17
 Identities = 41/55 (74%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
 Frame = +1

Query: 439 SREDWRKAKELEEARKAGTAPAAVDETGKDINPHIPQYIASAPWYYGTS-GPTLK 600
           +REDWRK KELEE RK G APA VDE GKDINPHIPQYI+S PWY   S  PTLK
Sbjct: 29  TREDWRKKKELEEQRKLGNAPAEVDEEGKDINPHIPQYISSVPWYIDPSKRPTLK 83


>AY486334-1|AAS59410.1|   60|Homo sapiens splicing factor protein.
          Length = 60

 Score = 56.4 bits (130), Expect = 7e-08
 Identities = 25/32 (78%), Positives = 26/32 (81%)
 Frame = +1

Query: 439 SREDWRKAKELEEARKAGTAPAAVDETGKDIN 534
           +REDWRK KELEE RK G APA VDE GKDIN
Sbjct: 29  TREDWRKKKELEEQRKLGNAPAEVDEEGKDIN 60


>BC064830-1|AAH64830.1|  603|Homo sapiens TAF2 protein protein.
          Length = 603

 Score = 29.9 bits (64), Expect = 7.1
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -3

Query: 263 NINFWVHNSLCLFDLFYF*TISTLKTEDISC*KCRFFLIRISCMNYNFIY 114
           NINF   + +   +L  F T++ L    ++  +CR + +RI+ +   FIY
Sbjct: 37  NINFQRKSVVGFVELTIFPTVANLNRIKLNSKQCRIYRVRINDLEAAFIY 86


>BC047732-1|AAH47732.1|  604|Homo sapiens TAF2 protein protein.
          Length = 604

 Score = 29.9 bits (64), Expect = 7.1
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -3

Query: 263 NINFWVHNSLCLFDLFYF*TISTLKTEDISC*KCRFFLIRISCMNYNFIY 114
           NINF   + +   +L  F T++ L    ++  +CR + +RI+ +   FIY
Sbjct: 37  NINFQRKSVVGFVELTIFPTVANLNRIKLNSKQCRIYRVRINDLEAAFIY 86


>BC035673-1|AAH35673.1|  604|Homo sapiens TAF2 protein protein.
          Length = 604

 Score = 29.9 bits (64), Expect = 7.1
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -3

Query: 263 NINFWVHNSLCLFDLFYF*TISTLKTEDISC*KCRFFLIRISCMNYNFIY 114
           NINF   + +   +L  F T++ L    ++  +CR + +RI+ +   FIY
Sbjct: 37  NINFQRKSVVGFVELTIFPTVANLNRIKLNSKQCRIYRVRINDLEAAFIY 86


>AF057694-1|AAC13540.1| 1199|Homo sapiens TBP-associated factor
           TAFII150 protein.
          Length = 1199

 Score = 29.9 bits (64), Expect = 7.1
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -3

Query: 263 NINFWVHNSLCLFDLFYF*TISTLKTEDISC*KCRFFLIRISCMNYNFIY 114
           NINF   + +   +L  F T++ L    ++  +CR + +RI+ +   FIY
Sbjct: 37  NINFQRKSVVGFVELTIFPTVANLNRIKLNSKQCRIYRVRINDLEAAFIY 86


>AF040701-1|AAC68502.1| 1189|Homo sapiens TATA binding protein
           associated factor protein.
          Length = 1189

 Score = 29.9 bits (64), Expect = 7.1
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -3

Query: 263 NINFWVHNSLCLFDLFYF*TISTLKTEDISC*KCRFFLIRISCMNYNFIY 114
           NINF   + +   +L  F T++ L    ++  +CR + +RI+ +   FIY
Sbjct: 27  NINFQRKSVVGFVELTIFPTVANLNRIKLNSKQCRIYRVRINDLEAAFIY 76


>AF026445-1|AAC02966.1| 1199|Homo sapiens cofactor of initiator
           function protein.
          Length = 1199

 Score = 29.9 bits (64), Expect = 7.1
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -3

Query: 263 NINFWVHNSLCLFDLFYF*TISTLKTEDISC*KCRFFLIRISCMNYNFIY 114
           NINF   + +   +L  F T++ L    ++  +CR + +RI+ +   FIY
Sbjct: 37  NINFHRKSVVGFVELTIFPTVANLNRIKLNSKQCRIYRVRINDLEAAFIY 86


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,655,121
Number of Sequences: 237096
Number of extensions: 1185816
Number of successful extensions: 2297
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2297
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)