Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10g08
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.0  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   5.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 284 DKKVTNENINFWVHNSLCLF 225
           DK++T   I  W  N+ C F
Sbjct: 522 DKQLTLNEIYNWFQNTFCYF 541


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 290 NYNQSNRE*N*SQRTKKILYRQW 358
           NYN +N + N +   KK+ Y+ +
Sbjct: 323 NYNNNNYKYNYNNYNKKLYYKNY 345


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 278 FYHKNYNQSNRE*N*SQRTKKILY 349
           + + NYN +N   N +   KK+ Y
Sbjct: 333 YNNNNYNNNNYNNNYNNNCKKLYY 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,826
Number of Sequences: 438
Number of extensions: 2691
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)