Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10g08
         (601 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65660.1 68414.m07450 zinc knuckle (CCHC-type) family protein...    87   1e-17
At4g37120.1 68417.m05257 expressed protein                             83   1e-16
At3g45950.1 68416.m04972 splicing factor-related similar to step...    71   4e-13
At5g33200.1 68418.m03919 hypothetical protein predicted replicat...    33   0.11 
At4g11800.1 68417.m01879 calcineurin-like phosphoesterase family...    29   3.1  
At3g42980.1 68416.m04514 hypothetical protein                          28   5.4  
At1g07910.1 68414.m00860 expressed protein identical to GB:AAB07...    27   9.5  

>At1g65660.1 68414.m07450 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 535

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 39/54 (72%), Positives = 44/54 (81%)
 Frame = +1

Query: 439 SREDWRKAKELEEARKAGTAPAAVDETGKDINPHIPQYIASAPWYYGTSGPTLK 600
           SRED RK  ELEEARKAG APA VDE GK+INPHIPQY++SAPWY  +  P+LK
Sbjct: 10  SREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKPSLK 63


>At4g37120.1 68417.m05257 expressed protein
          Length = 536

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 37/54 (68%), Positives = 43/54 (79%)
 Frame = +1

Query: 439 SREDWRKAKELEEARKAGTAPAAVDETGKDINPHIPQYIASAPWYYGTSGPTLK 600
           SRED RK  ELEEARKAG APA VDE GK+INPHIP+Y++ APWY  +  P+LK
Sbjct: 10  SREDHRKKLELEEARKAGLAPAEVDEDGKEINPHIPEYMSKAPWYLKSEQPSLK 63


>At3g45950.1 68416.m04972 splicing factor-related similar to step II
           splicing factor SLU7 [Homo sapiens] GI:4249705
          Length = 385

 Score = 71.3 bits (167), Expect = 4e-13
 Identities = 34/54 (62%), Positives = 40/54 (74%)
 Frame = +1

Query: 439 SREDWRKAKELEEARKAGTAPAAVDETGKDINPHIPQYIASAPWYYGTSGPTLK 600
           SR+D RK KELEEARKAG APA VDE GK+IN HIP+Y+   P Y  +  P+LK
Sbjct: 10  SRKDHRKQKELEEARKAGLAPAEVDEGGKEINLHIPKYLTIPPLYAKSEKPSLK 63


>At5g33200.1 68418.m03919 hypothetical protein predicted replication
           A1 proteins - Arabidopsis thaliana
          Length = 426

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -3

Query: 395 RKICDIGTRDVVAIVCTIFS*YVVINFIHDYFGCSFCDKKVTN 267
           + ICD+     V +VCTI++  + +++   YF C  C+KKVT+
Sbjct: 186 KSICDLLHSMEVRVVCTIYA--LDLDWSWYYFSCRNCNKKVTH 226


>At4g11800.1 68417.m01879 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 1012

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 493 TAPAAVDETGKDINPHI-PQYIASAPWYYGTSGPTLK 600
           T P +VD+  K  N  + P ++   PWY GTS    K
Sbjct: 284 THPLSVDKYEKLKNQQLKPDFLDMVPWYSGTSADLFK 320


>At3g42980.1 68416.m04514 hypothetical protein
          Length = 303

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 362 VAIVCTIFS*YVVINFIHDYFGCSFCDKKVTN 267
           V +VCTI++  +  ++   YF C  C+KKVT+
Sbjct: 242 VRVVCTIYA--LDTDWSWYYFSCRNCNKKVTH 271


>At1g07910.1 68414.m00860 expressed protein identical to GB:AAB07881
           AT.I.24-9 gene product from [Arabidopsis thaliana] (Mol.
           Gen. Genet. 219 (1-2), 106-112 (1989))
          Length = 1081

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 451 WRKAKELEEARKAGTAPAAVDETGKDINPH 540
           WR+ +++    +A   P   D  G D NP+
Sbjct: 737 WRQIEDMCRRTRASAVPIVADSEGTDTNPY 766


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,951,251
Number of Sequences: 28952
Number of extensions: 181491
Number of successful extensions: 401
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)