Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10g06
         (619 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9UNL2 Cluster: Translocon-associated protein subunit g...   215   7e-55
UniRef50_Q95XS1 Cluster: Putative uncharacterized protein; n=2; ...   140   2e-32
UniRef50_Q5D974 Cluster: SJCHGC01752 protein; n=2; Schistosoma j...   123   4e-27
UniRef50_Q29330 Cluster: Translocon associated protein gamma cha...    83   7e-15
UniRef50_Q55GT5 Cluster: Putative uncharacterized protein; n=1; ...    68   2e-10
UniRef50_O75445 Cluster: Usherin precursor; n=34; Eukaryota|Rep:...    35   1.4  
UniRef50_A6P625 Cluster: Asparagine synthetase; n=1; Microcystis...    34   2.4  
UniRef50_Q5UYE7 Cluster: Putative uncharacterized protein; n=1; ...    34   2.4  
UniRef50_UPI00006CCA52 Cluster: TPR Domain containing protein; n...    33   7.2  
UniRef50_Q47DD9 Cluster: Putative uncharacterized protein; n=1; ...    33   7.2  
UniRef50_Q4P9C6 Cluster: Putative uncharacterized protein; n=1; ...    33   7.2  
UniRef50_Q4QFW0 Cluster: Putative uncharacterized protein; n=6; ...    32   9.5  

>UniRef50_Q9UNL2 Cluster: Translocon-associated protein subunit
           gamma; n=36; Eumetazoa|Rep: Translocon-associated
           protein subunit gamma - Homo sapiens (Human)
          Length = 185

 Score =  215 bits (525), Expect = 7e-55
 Identities = 101/171 (59%), Positives = 132/171 (77%), Gaps = 2/171 (1%)
 Frame = +3

Query: 78  MSGKNNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHSLEISTAII 257
           M+ K +     EE+LLLQDFSRN+S KSSALF+GNAFIVSAIPIWL+WR+  +++  + +
Sbjct: 1   MAPKGSSKQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAV 60

Query: 258 WFILVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKL--ADDKKMSRKEKDER 431
            + ++T  ST+L+A AY+N KF LKH             ++RKL  AD++KMSRKEKDER
Sbjct: 61  LYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDER 120

Query: 432 ILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNYIVSLT 584
           ILWKKNEVADYEATT+SIFYNN LFL +VI++SF+IL+ F PTVNYI+S++
Sbjct: 121 ILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYILSIS 171


>UniRef50_Q95XS1 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 178

 Score =  140 bits (340), Expect = 2e-32
 Identities = 69/158 (43%), Positives = 102/158 (64%)
 Frame = +3

Query: 105 TKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHSLEISTAIIWFILVTAAS 284
           TKEEELLL  +S   STK +  FY NA I+S  P++LF+ VH +EI  +++ + L    +
Sbjct: 5   TKEEELLLSSYSATSSTKGNLFFYLNALIISIAPLYLFYGVHQMEIQDSLVVWGLSAVGT 64

Query: 285 TWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKLADDKKMSRKEKDERILWKKNEVADY 464
            +LL+LA +N K  LKH             +S + A DKKM+ KEK+ER L++KNEVAD 
Sbjct: 65  AYLLSLACKNQKCLLKHQIVMKRGSAVEREISGQYAADKKMTVKEKEERALFRKNEVADT 124

Query: 465 EATTYSIFYNNALFLTIVILSSFYILRTFTPTVNYIVS 578
           E+T  S+FY N+L+LTI+++S+F++L    P  N ++S
Sbjct: 125 ESTYLSVFYTNSLYLTIMLVSAFFLLANVAPVFNLLIS 162


>UniRef50_Q5D974 Cluster: SJCHGC01752 protein; n=2; Schistosoma
           japonicum|Rep: SJCHGC01752 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 173

 Score =  123 bits (296), Expect = 4e-27
 Identities = 60/163 (36%), Positives = 101/163 (61%)
 Frame = +3

Query: 105 TKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHSLEISTAIIWFILVTAAS 284
           TKE+E LL+++S+  S  S  L Y NA ++S+IPIWLF+ VH + +    + F +++ AS
Sbjct: 6   TKEDERLLEEYSQAASKSSEKLVYVNAIMISSIPIWLFFGVHKMPLVANSVLFAIISLAS 65

Query: 285 TWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKLADDKKMSRKEKDERILWKKNEVADY 464
           T+L++LAY+N+K  L               ++ +   DKK+S+K +++ +  +  +VADY
Sbjct: 66  TFLMSLAYKNSKAPLMERIAIRRTEAITKEVNSEACKDKKLSKKNREDIVRERTKKVADY 125

Query: 465 EATTYSIFYNNALFLTIVILSSFYILRTFTPTVNYIVSLTXCI 593
           E+TT+SIFYNN LFL +++L S  +L  F+  +  +  L  C+
Sbjct: 126 ESTTFSIFYNNCLFLLLLLLLS-AVLHHFSNQMYPLYLLKVCV 167


>UniRef50_Q29330 Cluster: Translocon associated protein gamma chain;
           n=2; Laurasiatheria|Rep: Translocon associated protein
           gamma chain - Sus scrofa (Pig)
          Length = 77

 Score = 82.6 bits (195), Expect = 7e-15
 Identities = 42/78 (53%), Positives = 55/78 (70%), Gaps = 2/78 (2%)
 Frame = +3

Query: 240 ISTAIIWFILVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKL--ADDKKMSR 413
           I +A+++ ++ T  ST+L+A AY+N KF LKH             ++RKL  AD++KMSR
Sbjct: 1   IQSAVLYSVM-TLVSTYLVAXAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSR 59

Query: 414 KEKDERILWKKNEVADYE 467
           KEKDERILWKKNEVADYE
Sbjct: 60  KEKDERILWKKNEVADYE 77


>UniRef50_Q55GT5 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 170

 Score = 68.1 bits (159), Expect = 2e-10
 Identities = 41/147 (27%), Positives = 73/147 (49%)
 Frame = +3

Query: 144 NVSTKSSALFYGNAFIVSAIPIWLFWRVHSLEISTAIIWFILVTAASTWLLALAYRNTKF 323
           +VS +   +++ N+ IV+ +P++L+  +  + I   +I +  VT  +  +L  AY N  +
Sbjct: 15  DVSIEQRIVYFINSLIVALVPVYLYHAIFFMSIDDHMIIYGSVTLFAAIVLTFAYNNI-Y 73

Query: 324 QLKHXXXXXXXXXXXXXMSRKLADDKKMSRKEKDERILWKKNEVADYEATTYSIFYNNAL 503
           ++K                 K+ D KK +  +K+ + L     V  +EA   SI YNNA+
Sbjct: 74  RMKRLKLSASREHISIASKNKVGDKKKFAAAQKEVQAL-----VTSHEAIAASIMYNNAV 128

Query: 504 FLTIVILSSFYILRTFTPTVNYIVSLT 584
           FL  V + SF I +      NYI+S++
Sbjct: 129 FLICVSIFSFIIFKNVPLVYNYIISIS 155


>UniRef50_O75445 Cluster: Usherin precursor; n=34; Eukaryota|Rep:
            Usherin precursor - Homo sapiens (Human)
          Length = 5202

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 429  RILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNYIVSLTXC 590
            R++W      +   T YSI+ NN L+ T + +   +ILR  +P   Y + +  C
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIYDIQVEVC 3090


>UniRef50_A6P625 Cluster: Asparagine synthetase; n=1; Microcystis
           aeruginosa|Rep: Asparagine synthetase - Microcystis
           aeruginosa
          Length = 622

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
 Frame = +2

Query: 71  SKNVWKEQQSFYKRRRVIVARF*PECVHKIVCSLLRERFYCFSNSNLVVLEGTFIGNKH- 247
           S  VW + Q FY+R          E    +  + LRE+FY F   N  V++   I N+H 
Sbjct: 409 SLKVWGDNQLFYERNLYAYQ----ETKLALYSAKLREQFYQFDCLNFEVVDHEKIKNRHH 464

Query: 248 ---RNYLVYPSNGS*HLVA 295
              R+YL +    S HLVA
Sbjct: 465 LHKRSYLDFKLRLSDHLVA 483


>UniRef50_Q5UYE7 Cluster: Putative uncharacterized protein; n=1;
           Haloarcula marismortui|Rep: Putative uncharacterized
           protein - Haloarcula marismortui (Halobacterium
           marismortui)
          Length = 419

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = +3

Query: 138 SRNVSTKSSALFYGNAFIVSAIPIWLFWRVHSLEISTAIIWFILVTAASTWLLALAYRNT 317
           +RN  +  +A  Y +   V++ P WL WR +SL       +F L  A   WL+   Y++T
Sbjct: 281 TRNGQSVDTARTYRSGPSVASAPAWLPWRRYSLVYGRTTDYFTLTDAERRWLV---YKST 337

Query: 318 K 320
           +
Sbjct: 338 R 338


>UniRef50_UPI00006CCA52 Cluster: TPR Domain containing protein; n=1;
            Tetrahymena thermophila SB210|Rep: TPR Domain containing
            protein - Tetrahymena thermophila SB210
          Length = 3418

 Score = 32.7 bits (71), Expect = 7.2
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 76   KCLERTTKLLQKKKSYC-CKILAGMCPQNRLLSFTGTLLLFQQF 204
            K LE T K L+ K SY  CK+L G C  N     T T+  + +F
Sbjct: 2172 KVLEYTQKALELKPSYDECKVLLGFCYLNIQKDLTKTIEFYNEF 2215


>UniRef50_Q47DD9 Cluster: Putative uncharacterized protein; n=1;
           Dechloromonas aromatica RCB|Rep: Putative
           uncharacterized protein - Dechloromonas aromatica
           (strain RCB)
          Length = 505

 Score = 32.7 bits (71), Expect = 7.2
 Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = +3

Query: 174 YGNAFIVSAIPIWLFWRVHS--LEIS-TAIIWFILVTAAST--WLL 296
           Y +AFIV  I +WL WR     L I  TA  W  L  A +T  WLL
Sbjct: 46  YAHAFIVPPIALWLIWRKRDELLAIQPTASGWLALPLAVATFAWLL 91


>UniRef50_Q4P9C6 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 1179

 Score = 32.7 bits (71), Expect = 7.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 140 PECVHKIVCSLLRERFYCFSNSNLVVLEGTFIGNKHRNYL 259
           PE   ++VC++L    Y FSNS L +L   F+ +    YL
Sbjct: 266 PELFQQMVCTVLESESYLFSNSELDILSAFFMLSYPARYL 305


>UniRef50_Q4QFW0 Cluster: Putative uncharacterized protein; n=6;
           Trypanosomatidae|Rep: Putative uncharacterized protein -
           Leishmania major
          Length = 172

 Score = 32.3 bits (70), Expect = 9.5
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 468 ATTYSIFYNNALFLTIVILSSFYILRTFTPTVNYIVSLTXCIWTSWL 608
           A  YS+F+ N++F  +      YI R   P  +YI+S T      WL
Sbjct: 109 ALGYSLFFLNSVFFVVSTCLMAYIFRHSDPRASYILSPTLTAALLWL 155


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 590,105,514
Number of Sequences: 1657284
Number of extensions: 11569832
Number of successful extensions: 30814
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 29749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30797
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44807090004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)